View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10111_low_56 (Length: 241)
Name: NF10111_low_56
Description: NF10111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10111_low_56 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 126 - 241
Target Start/End: Complemental strand, 1920031 - 1919916
Alignment:
| Q |
126 |
gtagacatctacaaggtactcatcagatgtaccagaaaatgtcatcttaagatattccaaatctatatcatgcttttcatggatgaactgattatctatg |
225 |
Q |
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| T |
1920031 |
gtagacatctacaagtgactcatcagatataccaggaaatgtcatcctaagatattccaaatcaatatcaagctcttcatccatatactgattctctgtc |
1919932 |
T |
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| Q |
226 |
agctgtgccacactct |
241 |
Q |
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| T |
1919931 |
agctgtgccacactct |
1919916 |
T |
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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 42121172 - 42121237
Alignment:
| Q |
41 |
caaaacattctagagtatacaataaatcttagata-tctatctggtcactaccaatacaattatca |
105 |
Q |
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| T |
42121172 |
caaaacattctagagtatacaataaatcttagatagattagttggtcaccaccaatacaattatca |
42121237 |
T |
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