View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10111_low_59 (Length: 240)

Name: NF10111_low_59
Description: NF10111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10111_low_59
NF10111_low_59
[»] chr5 (2 HSPs)
chr5 (1-223)||(15187798-15188019)
chr5 (155-195)||(19215250-19215289)
[»] chr7 (1 HSPs)
chr7 (1-200)||(33190996-33191194)
[»] chr1 (3 HSPs)
chr1 (1-196)||(39332047-39332241)
chr1 (155-200)||(17114952-17114997)
chr1 (79-132)||(17115025-17115078)
[»] chr8 (2 HSPs)
chr8 (79-200)||(8831460-8831586)
chr8 (155-200)||(27787010-27787055)
[»] chr4 (3 HSPs)
chr4 (42-200)||(37049758-37049921)
chr4 (79-129)||(16832457-16832507)
chr4 (155-200)||(19852321-19852366)
[»] chr3 (2 HSPs)
chr3 (79-200)||(51524638-51524764)
chr3 (155-201)||(21845202-21845247)
[»] chr6 (3 HSPs)
chr6 (155-200)||(25167719-25167764)
chr6 (79-128)||(10989786-10989835)
chr6 (155-200)||(29708952-29708997)
[»] chr2 (1 HSPs)
chr2 (155-200)||(37344486-37344531)


Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 15187798 - 15188019
Alignment:
Q  1 cctattgtcccttctctcgaggatgttgatttagctcccgttcctatgccgcaaccggtaaccactagattttttagcttgacaaatgacaagctccctt 100  Q
    ||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||    
T  15187798 cctattgtcacttctctcgaggatgttgatttagctctcattcctatgccgcaaccggtaaccactagattttctagcttaacaaatgacaaactccctt 15187897  T
Q  101 caagccaaattatgattcctgcttccaaaccccctttctactacagtccagaaaagtgtgcaaattctttccaaattttgaggcgatgaggtagaagagg 200  Q
    ||||||||||||||||||||||||||||| ||||||||| || ||| ||||||||||||||| ||||||| ||||||||| || ||||||||||||||||    
T  15187898 caagccaaattatgattcctgcttccaaatcccctttctgctgcagcccagaaaagtgtgcagattctttgcaaattttg-ggggatgaggtagaagagg 15187996  T
Q  201 acaacactaaagccattgtatca 223  Q
    |||||||| |||||||| |||||    
T  15187997 acaacactgaagccattatatca 15188019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 19215250 - 19215289
Alignment:
Q  155 agtgtgcaaattctttccaaattttgaggcgatgaggtaga 195  Q
    |||||||||||||||| |||||||||||| |||||||||||    
T  19215250 agtgtgcaaattcttttcaaattttgagg-gatgaggtaga 19215289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 33190996 - 33191194
Alignment:
Q  1 cctattgtcccttctctcgaggatgttgatttagctcccgttcctatgccgcaaccggtaaccactagattttttagcttgacaaatgacaagctccctt 100  Q
    ||||||||| || |||| ||||||||||  ||||||||||||||||||||||||||  ||||||| | ||||  |||||| || | ||||||||||||||    
T  33190996 cctattgtcactcctctagaggatgttgtattagctcccgttcctatgccgcaacctataaccaccaaatttgctagcttaactagtgacaagctccctt 33191095  T
Q  101 caagccaaattatgattcctgcttccaaaccccctttctactacagtccagaaaagtgtgcaaattctttccaaattttgaggcgatgaggtagaagagg 200  Q
    ||||| |||   | || |||||||||||| || |||||| || ||| | | || |||||||| ||||||| ||||||||| || ||||||||||||||||    
T  33191096 caagctaaacatttatccctgcttccaaa-cctctttctgctgcagccaaaaagagtgtgcagattcttttcaaattttggggggatgaggtagaagagg 33191194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 39332047 - 39332241
Alignment:
Q  1 cctattgtcccttctctcgaggatgttgatttagctcccgttcctatgccgcaaccggtaaccactagattttttagcttgacaaatgacaagctccctt 100  Q
    ||||||||| || |||| ||| |||||| ||| || |||||||||||| |||||||  ||||||| ||||||  ||||||  | | ||||||||||||||    
T  39332047 cctattgtcactcctcttgagaatgttggttttgcccccgttcctatgtcgcaacctataaccaccagatttgctagcttatctagtgacaagctccctt 39332146  T
Q  101 caagccaaattatgattcctgcttccaaaccccctttctactacagtccagaaaagtgtgcaaattctttccaaattttgaggcgatgaggtagaa 196  Q
    |||||||||   |||| |||||||||||| ||||||||| || ||| |   || |||||||| ||||||||||||||||| || ||||||||||||    
T  39332147 caagccaaaccttgatccctgcttccaaa-cccctttctgctgcagccttaaagagtgtgcagattctttccaaattttgtggggatgaggtagaa 39332241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 17114997 - 17114952
Alignment:
Q  155 agtgtgcaaattctttccaaattttgaggcgatgaggtagaagagg 200  Q
    |||||| | |||||||||||||||||||| ||||| ||||||||||    
T  17114997 agtgtgtagattctttccaaattttgaggggatgaagtagaagagg 17114952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 132
Target Start/End: Complemental strand, 17115078 - 17115025
Alignment:
Q  79 ttgacaaatgacaagctcccttcaagccaaattatgattcctgcttccaaaccc 132  Q
    |||||||||||||||||| |||||||||||||  || ||| || ||||||||||    
T  17115078 ttgacaaatgacaagctctcttcaagccaaatcttggttcatggttccaaaccc 17115025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 200
Target Start/End: Complemental strand, 8831586 - 8831460
Alignment:
Q  79 ttgacaaatgacaagctcccttcaagccaaattatgattcctgcttccaaaccc-----cctttctactacagtccagaaaagtgtgcaaattctttcca 173  Q
    ||||||| ||||||||||||||||||||||||  ||||| || |||||||| ||     || |||| || ||| ||  || |||||||| ||||||||||    
T  8831586 ttgacaagtgacaagctcccttcaagccaaatcttgatttctacttccaaatcctctctccattctgctgcagccctaaagagtgtgcagattctttcca 8831487  T
Q  174 aattttgaggcgatgaggtagaagagg 200  Q
    ||||||| || ||||| ||||||||||    
T  8831486 aattttggggggatgaagtagaagagg 8831460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 27787055 - 27787010
Alignment:
Q  155 agtgtgcaaattctttccaaattttgaggcgatgaggtagaagagg 200  Q
    |||||||| |||||||||||||||||||| ||||| ||||||||||    
T  27787055 agtgtgcagattctttccaaattttgaggggatgaagtagaagagg 27787010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 200
Target Start/End: Original strand, 37049758 - 37049921
Alignment:
Q  42 tcctatgccgcaaccggtaaccactagattttttagcttgacaaatgacaagctcccttcaagccaaattatgattcctgcttccaaaccc-cctttc-- 138  Q
    ||||||||| |||||  |||| ||||| | |  ||| ||||||  ||||||||||||||||||||||||  || |||||||||||||| || ||||||      
T  37049758 tcctatgcctcaacctataactactagctatgctagtttgacacctgacaagctcccttcaagccaaatcttggttcctgcttccaaatcctcctttcat 37049857  T
Q  139 --tactacagtccagaaaagtgtgcaaattctttccaaattttgaggcgatgaggtagaagagg 200  Q
      | || | | ||  || |||||||||||||||||||||||||| || || |||||||||||||    
T  37049858 tctgctgctgccctaaagagtgtgcaaattctttccaaattttggggggaagaggtagaagagg 37049921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 16832507 - 16832457
Alignment:
Q  79 ttgacaaatgacaagctcccttcaagccaaattatgattcctgcttccaaa 129  Q
    ||||||| ||||||||||||||||||||||| | |||||| ||||| ||||    
T  16832507 ttgacaagtgacaagctcccttcaagccaaactttgattcttgctttcaaa 16832457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 19852321 - 19852366
Alignment:
Q  155 agtgtgcaaattctttccaaattttgaggcgatgaggtagaagagg 200  Q
    |||||||||||||||||||||||||| || || || ||||||||||    
T  19852321 agtgtgcaaattctttccaaattttggggggaagatgtagaagagg 19852366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 200
Target Start/End: Original strand, 51524638 - 51524764
Alignment:
Q  79 ttgacaaatgacaagctcccttcaagccaaattatgattcctgcttccaaaccccct-----ttctactacagtccagaaaagtgtgcaaattctttcca 173  Q
    ||||||| ||||||||||||||||||||||||  || ||| || |||||||||| ||     |||| |  ||| ||  || |||||||||||||||||||    
T  51524638 ttgacaagtgacaagctcccttcaagccaaatcttggttcatgtttccaaaccctctctccattctgccgcagcccttaagagtgtgcaaattctttcca 51524737  T
Q  174 aattttgaggcgatgaggtagaagagg 200  Q
    ||||||| || ||||| ||||||||||    
T  51524738 aattttggggggatgaagtagaagagg 51524764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 201
Target Start/End: Complemental strand, 21845247 - 21845202
Alignment:
Q  155 agtgtgcaaattctttccaaattttgaggcgatgaggtagaagagga 201  Q
    |||||||| ||||||||||||||||| || |||||||||||||||||    
T  21845247 agtgtgcagattctttccaaattttg-ggggatgaggtagaagagga 21845202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 25167719 - 25167764
Alignment:
Q  155 agtgtgcaaattctttccaaattttgaggcgatgaggtagaagagg 200  Q
    |||||||||||||||||||||||||| || || |||||||||||||    
T  25167719 agtgtgcaaattctttccaaattttggggggaagaggtagaagagg 25167764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 10989786 - 10989835
Alignment:
Q  79 ttgacaaatgacaagctcccttcaagccaaattatgattcctgcttccaa 128  Q
    ||||||| ||||||||||||||||| ||||| | || |||||||||||||    
T  10989786 ttgacaattgacaagctcccttcaaaccaaactttggttcctgcttccaa 10989835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 29708952 - 29708997
Alignment:
Q  155 agtgtgcaaattctttccaaattttgaggcgatgaggtagaagagg 200  Q
    |||||||| ||||||||||||||||| || ||||| ||||||||||    
T  29708952 agtgtgcagattctttccaaattttggggggatgaagtagaagagg 29708997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 37344486 - 37344531
Alignment:
Q  155 agtgtgcaaattctttccaaattttgaggcgatgaggtagaagagg 200  Q
    |||||||| ||||||||||||||||| || ||||||||||||||||    
T  37344486 agtgtgcagattctttccaaattttggggggatgaggtagaagagg 37344531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University