View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10111_low_6 (Length: 529)
Name: NF10111_low_6
Description: NF10111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10111_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 4931875 - 4932167
Alignment:
| Q |
1 |
tcacaaataccgccccgatctcttgagtcaatctatcagtatcattggatataagaccatatagctctcatgaaccataatcactcg--tccttcaatca |
98 |
Q |
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| T |
4931875 |
tcacaaataccgccccgatttcttgattcaatcgatcagtatcgttggatataagaccatatagttctcatgaaccataatcacttgagtccttcaatca |
4931974 |
T |
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| Q |
99 |
aagtcgtatgaatcgtctgatttccttaagagatatcctaaagtgggatatccctaatggattgattacggtgaatgcttacttgaccacgcatgcgata |
198 |
Q |
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| T |
4931975 |
aagtcgtatgaatcgtctgattcccttaagagatatcctaaagtgagatatccttaatggattgattacggtgaatgcttacttgaacccgcatgcgata |
4932074 |
T |
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| Q |
199 |
tgagatgtcctt--------aagccaccatgtctccaaatacttggaattcagatttctttcgcaaggattctgcattcaaccaagcagggta |
283 |
Q |
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| T |
4932075 |
tgagatgtccttaagtgaggaagccagtgtgtctccaaatacttggaattcagacttctcatgcaaggattctgcattcaaccaagcagggta |
4932167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 330 - 514
Target Start/End: Original strand, 4932183 - 4932367
Alignment:
| Q |
330 |
ttatgattgaaaataccaaacttgaatctggatcgttcgatcttgatggaacaaccaccaacatttcaatcgcgtgaatgctaagaatccatggctgtcg |
429 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4932183 |
ttatgattgaaaataccaaacttgaatctggatcgtttgatcttgatggaacaaccaccaacatttcaatcgcgtgaatgctaagaatccctggctgtcg |
4932282 |
T |
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| Q |
430 |
gggtgccgaatccaaatatttgattaggcaaacattataattgagaggcattgtcacttgataatttctttttcaacaccatttc |
514 |
Q |
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| T |
4932283 |
gggtgccgaatccaaatatttgattaggcagacattataattgagacgcattgtcacttgataatttctttttcaacaccatttc |
4932367 |
T |
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