View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10111_low_60 (Length: 240)

Name: NF10111_low_60
Description: NF10111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10111_low_60
NF10111_low_60
[»] chr4 (2 HSPs)
chr4 (1-223)||(56107842-56108064)
chr4 (2-210)||(20646708-20646916)
[»] chr5 (1 HSPs)
chr5 (4-223)||(13863320-13863540)
[»] chr6 (1 HSPs)
chr6 (1-223)||(26013609-26013831)
[»] chr7 (1 HSPs)
chr7 (1-170)||(6965167-6965336)
[»] chr2 (3 HSPs)
chr2 (1-208)||(26397981-26398188)
chr2 (61-206)||(25830597-25830742)
chr2 (10-210)||(26459510-26459710)
[»] scaffold0182 (1 HSPs)
scaffold0182 (1-208)||(30266-30473)
[»] scaffold0006 (1 HSPs)
scaffold0006 (1-208)||(277376-277583)
[»] chr3 (1 HSPs)
chr3 (9-206)||(33001846-33002043)
[»] chr1 (1 HSPs)
chr1 (2-210)||(845876-846085)


Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 56108064 - 56107842
Alignment:
Q  1 tcacatcccaccttcaaacatggacgtggattttgtgaactggattctcgcttcttgccgtatctcgtgcaagcataacttacatcaataaactctctag 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  56108064 tcacatcccaccttcaaacaaggacgtggattttgtgaactggattctcgcttcttgccgtatcttgtgcaagcataacttacatcaataaactctctag 56107965  T
Q  101 aaatctttgaacggggactatttttaattgatatctcaaatccaactgacttagcataatgagtttagaatgaataagcattttcttgtgaatcaaattc 200  Q
    |||||||||||||  |||||||||||||||||||| |||| |||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  56107964 aaatctttgaacgacgactatttttaattgatatcccaaacccaactgatttagcataatgagtgtagaacgaataagcattttcttgtgaatcaaattc 56107865  T
Q  201 cattccaatggttggttcttgac 223  Q
    |||||||||| | ||||||||||    
T  56107864 cattccaatgttaggttcttgac 56107842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 210
Target Start/End: Original strand, 20646708 - 20646916
Alignment:
Q  2 cacatcccaccttcaaacatggacgtggattttgtgaactggattctcgcttcttgccgtatctcgtgcaagcataacttacatcaataaactctctaga 101  Q
    ||||| |||||||||||   ||||||||||||||||   | |||||||| || || || | |||||||||||||||  | ||||||||||| | | || |    
T  20646708 cacattccaccttcaaaagaggacgtggattttgtgccgtcgattctcgttttttaccatgtctcgtgcaagcatatttcacatcaataaattgtttata 20646807  T
Q  102 aatctttgaacggggactatttttaattgatatctcaaatccaactgacttagcataatgagtttagaatgaataagcattttcttgtgaatcaaattcc 201  Q
    ||| || |||||  ||||| ||||| |  |||   ||||||| ||  | ||| |||| ||||  ||||| |||||||||| ||||||||| |||||||||    
T  20646808 aattttcgaacgacgactacttttagtgcatacaccaaatccgacacatttatcatattgagcatagaaagaataagcatcttcttgtgactcaaattcc 20646907  T
Q  202 attccaatg 210  Q
    |||||||||    
T  20646908 attccaatg 20646916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 13863540 - 13863320
Alignment:
Q  4 catcccaccttcaaacatggacgtggattttgtgaactggattctcgcttcttgccgt--atctcgtgcaagcataacttacatcaataaactctctaga 101  Q
    ||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  13863540 catcccaccttcaaataaggacgtggattttgtgaattggattctcgcttcttgccgtgtatctcgtgcaagcataacttacatcaataaactctctaga 13863441  T
Q  102 aatctttgaacggggactatttttaattgatatctcaaatccaactgacttagcataatgagtttagaatgaataagcattttcttgtgaatcaaattcc 201  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||| |||||||| |    
T  13863440 aatctttgaacgggaactatttttaattgatatctcaaatccaactgccttagcaaaatgagtgtagaatgaataagcattttcttgtg-atcaaatttc 13863342  T
Q  202 attccaatggttggttcttgac 223  Q
    ||||||||||||||||||||||    
T  13863341 attccaatggttggttcttgac 13863320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 26013831 - 26013609
Alignment:
Q  1 tcacatcccaccttcaaacatggacgtggattttgtgaactggattctcgcttcttgccgtatctcgtgcaagcataacttacatcaataaactctctag 100  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26013831 tcacatcccaccttcaaacaaggacgtggattttgtgaactagattctcgcttcttgccgtatctcgtgcaagcataacttacatcaataaactctctag 26013732  T
Q  101 aaatctttgaacggggactatttttaattgatatctcaaatccaactgacttagcataatgagtttagaatgaataagcattttcttgtgaatcaaattc 200  Q
    |||||||||||||    |||||||||||||||||| |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||     
T  26013731 aaatctttgaacgacagctatttttaattgatatcccaaacccaactgacttagcataatgagtgtagaacgaataagcattttcttgtgaatcaaattt 26013632  T
Q  201 cattccaatggttggttcttgac 223  Q
    |||||||||| | || |||||||    
T  26013631 cattccaatgttaggctcttgac 26013609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 6965336 - 6965167
Alignment:
Q  1 tcacatcccaccttcaaacatggacgtggattttgtgaactggattctcgcttcttgccgtatctcgtgcaagcataacttacatcaataaactctctag 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6965336 tcacatcccaccttcaaacaaggacgtggattttgtgaactggattctcgcttcttgccgtatcttgtgcaagcataacttacatcaataaactctctag 6965237  T
Q  101 aaatctttgaacggggactatttttaattgatatctcaaatccaactgacttagcataatgagtttagaa 170  Q
    |||||||||||||  |||||||| ||||||||||| |||||||||||||||||||||||||||| |||||    
T  6965236 aaatctttgaacgatgactatttctaattgatatcccaaatccaactgacttagcataatgagtgtagaa 6965167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 26397981 - 26398188
Alignment:
Q  1 tcacatcccaccttcaaacatggacgtggattttgtgaactggattctcgcttcttgccgtatctcgtgcaagcataacttacatcaataaactctctag 100  Q
    |||||| ||||||||||||| ||||||||||||||||   | || ||||| || || || ||||| |||||||||||  | ||||||||||| | |||||    
T  26397981 tcacattccaccttcaaacaaggacgtggattttgtgcggtcgactctcgttttttcccatatcttgtgcaagcatatttcacatcaataaattgtctag 26398080  T
Q  101 aaatctttgaacggggactatttttaattgatatctcaaatccaactgacttagcataatgagtttagaatgaataagcattttcttgtgaatcaaattc 200  Q
    |||| ||||||||| ||||  ||||||| ||||   ||||||| ||  | ||||||||  ||   ||||| |||||||||| ||| ||||| ||||||||    
T  26398081 aaatttttgaacggcgactgcttttaatggatacaccaaatccgacacatttagcatatcgaacatagaaagaataagcatcttcctgtgactcaaattc 26398180  T
Q  201 cattccaa 208  Q
    ||||||||    
T  26398181 cattccaa 26398188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 206
Target Start/End: Original strand, 25830597 - 25830742
Alignment:
Q  61 tatctcgtgcaagcataacttacatcaataaactctctagaaatctttgaacggggactatttttaattgatatctcaaatccaactgacttagcataat 160  Q
    ||||| |||||||||||| | ||||||||||| ||  |||||| ||||||||    |||| |||| || || ||  |||||| |||  | |||||||||     
T  25830597 tatcttgtgcaagcataagtcacatcaataaattccgtagaaacctttgaacacttactagttttgatggaaattccaaatctaacaaatttagcataaa 25830696  T
Q  161 gagtttagaatgaataagcattttcttgtgaatcaaattccattcc 206  Q
    |||  |||||||| || |||||||||||||| ||||||||||||||    
T  25830697 gagagtagaatgagtatgcattttcttgtgactcaaattccattcc 25830742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 210
Target Start/End: Complemental strand, 26459710 - 26459510
Alignment:
Q  10 accttcaaacatggacgtggattttgtgaactggattctcgcttcttgccgtatctcgtgcaagcataacttacatcaataaactctctagaaatctttg 109  Q
    ||||||||||| ||||||||||||||     | |||||||| || || || | |||||||||||||||  | ||||||||||| | | ||||||| || |    
T  26459710 accttcaaacaaggacgtggattttgcaccgtcgattctcgttttttaccatgtctcgtgcaagcatatttcacatcaataaattgtttagaaattttcg 26459611  T
Q  110 aacggggactatttttaattgatatctcaaatccaactgacttagcataatgagtttagaatgaataagcattttcttgtgaatcaaattccattccaat 209  Q
    ||||  | ||| ||||| |  |||   ||||||| ||  | |||||||| ||||  ||||| |||||||||| ||||||||| |||||||||||| ||||    
T  26459610 aacgacggctacttttagtgcatacaccaaatccgacacatttagcatattgagcatagaaagaataagcatcttcttgtgactcaaattccatttcaat 26459511  T
Q  210 g 210  Q
    |    
T  26459510 g 26459510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 30266 - 30473
Alignment:
Q  1 tcacatcccaccttcaaacatggacgtggattttgtgaactggattctcgcttcttgccgtatctcgtgcaagcataacttacatcaataaactctctag 100  Q
    |||||| ||||||||||||| ||||||||||||||||   | || ||||| || || || ||||| |||||||||||  | ||||||||||| | |||||    
T  30266 tcacattccaccttcaaacaaggacgtggattttgtgcggtcgactctcgttttttcccatatcttgtgcaagcatatttcacatcaataaattgtctag 30365  T
Q  101 aaatctttgaacggggactatttttaattgatatctcaaatccaactgacttagcataatgagtttagaatgaataagcattttcttgtgaatcaaattc 200  Q
    |||| ||||||||| || |  ||||||| ||||   ||||||| ||  | ||||||||  ||   ||||| |||||||||| ||| ||||| ||||||||    
T  30366 aaatttttgaacggcgattgcttttaatggatacaccaaatccgacacatttagcatatcgaacatagaaagaataagcatcttcctgtgactcaaattc 30465  T
Q  201 cattccaa 208  Q
    ||||||||    
T  30466 cattccaa 30473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 277376 - 277583
Alignment:
Q  1 tcacatcccaccttcaaacatggacgtggattttgtgaactggattctcgcttcttgccgtatctcgtgcaagcataacttacatcaataaactctctag 100  Q
    |||||| ||||||||||||| ||||||||||||||||   | || ||||| || || || ||||| |||||||||||  | ||||||||||| | |||||    
T  277376 tcacattccaccttcaaacaaggacgtggattttgtgcggtcgactctcgttttttcccatatcttgtgcaagcatatttcacatcaataaattgtctag 277475  T
Q  101 aaatctttgaacggggactatttttaattgatatctcaaatccaactgacttagcataatgagtttagaatgaataagcattttcttgtgaatcaaattc 200  Q
    |||| ||||||||| || |  ||||||| ||||   ||||||| ||  | ||||||||  ||   ||||| |||||||||| ||| ||||| ||||||||    
T  277476 aaatttttgaacggcgattgcttttaatggatacaccaaatccgacacatttagcatatcgaacatagaaagaataagcatcttcctgtgactcaaattc 277575  T
Q  201 cattccaa 208  Q
    ||||||||    
T  277576 cattccaa 277583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 206
Target Start/End: Complemental strand, 33002043 - 33001846
Alignment:
Q  9 caccttcaaacatggacgtggattttgtgaactggattctcgcttcttgccgtatctcgtgcaagcataacttacatcaataaactctctagaaatcttt 108  Q
    |||||||||||| |||||||| || | ||   ||||| ||| ||| || || ||||| |||||||||||| | ||||||||||| ||  |||||| ||||    
T  33002043 caccttcaaacaaggacgtgggttatctgctgtggatgctctcttttttccatatcttgtgcaagcataagtcacatcaataaattccgtagaaaccttt 33001944  T
Q  109 gaacggggactatttttaattgatatctcaaatccaactgacttagcataatgagtttagaatgaataagcattttcttgtgaatcaaattccattcc 206  Q
    |||||   |||| |||| || || ||  ||||  |||| || ||||||||| |||  |||||||| || || ||||||||||| ||||||||||||||    
T  33001943 gaacgcttactagttttgatggaaattccaaactcaacagatttagcataaagagagtagaatgagtatgccttttcttgtgactcaaattccattcc 33001846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 210
Target Start/End: Original strand, 845876 - 846085
Alignment:
Q  2 cacatcccaccttcaaacatggacgtggattttgtgaactggattctcgcttcttg-ccgtatctcgtgcaagcataacttacatcaataaactctctag 100  Q
    ||||| ||||||||||||| ||||||||||||||||   | |||||||| || ||  || | ||||| |||||||||  | ||||||||||| | | ||     
T  845876 cacattccaccttcaaacaaggacgtggattttgtgtcgttgattctcgtttttttaccatgtctcgggcaagcatatttcacatcaataaattgtttaa 845975  T
Q  101 aaatctttgaacggggactatttttaattgatatctcaaatccaactgacttagcataatgagtttagaatgaataagcattttcttgtgaatcaaattc 200  Q
    |||| ||  ||||  ||||| ||||| |  |||   | ||||||||  | ||||||||  |||  ||||| |||||||||| ||||||||| ||||||||    
T  845976 aaattttcaaacgacgactacttttagtgcatacacctaatccaacacatttagcatatcgagcatagaaagaataagcatcttcttgtgactcaaattc 846075  T
Q  201 cattccaatg 210  Q
    ||||||||||    
T  846076 cattccaatg 846085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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