View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10111_low_64 (Length: 239)
Name: NF10111_low_64
Description: NF10111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10111_low_64 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 37070374 - 37070149
Alignment:
| Q |
1 |
tttcgttgaacttaaaagagtttaagatcaggaccattcaccaagtgttctacaattgaatgatataaaattatttcaaacatatttacaatctttagtt |
100 |
Q |
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| T |
37070374 |
tttcgttgaacttaaaagagtttaagatcaggaccattcaccaagtgttctacaattgaatgatataaaattatttcaaacatatttacaatctttagtt |
37070275 |
T |
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| Q |
101 |
ttaggcctttatcttttttccttttatatatgacaaatagatgtaatgtttgcagcaacttacacgcattgcactgaattctgctggtgcaaaaacgagg |
200 |
Q |
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| T |
37070274 |
ttaggcctttatcttttttccttttatatatgacaaatagatgtaatgtttgcagcaacttacacgcattgcactgaattctgctggtgcaaaaacgagg |
37070175 |
T |
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| Q |
201 |
tttaaaagattggttcatgataaatc |
226 |
Q |
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| T |
37070174 |
tttaaaagattggttcatgataaatc |
37070149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 224
Target Start/End: Complemental strand, 37080013 - 37079905
Alignment:
| Q |
114 |
ttttttccttttatatatgacaaatagatgtaatgtttgcagcaacttacacgcattgcactgaattctgctggtgcaaaaacgaggtttaaaagattgg |
213 |
Q |
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| T |
37080013 |
ttttttccttttatatgtaac--acaaatgtaatgtttgcagcaacttactcgtatggctttgaattctgctggtgtaaaaccaaggttgagaaggttgg |
37079916 |
T |
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| Q |
214 |
ttcatgataaa |
224 |
Q |
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| T |
37079915 |
tccatgataaa |
37079905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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