View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10111_low_66 (Length: 238)
Name: NF10111_low_66
Description: NF10111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10111_low_66 |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 79 - 204
Target Start/End: Original strand, 25268190 - 25268316
Alignment:
| Q |
79 |
attcatgttgaattaaaattgaggta-tttggggatcaaacacaattcctacaagtcatttgagaaggctttagcactaaatcaagtatgctcttgtgtt |
177 |
Q |
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|||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25268190 |
attcatgttgaagtaaaattgaggaactttggggatcaaacacaattcctacaagtcatttgagaaggctttagcactaaatcaagtatgttcttgtgtt |
25268289 |
T |
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| Q |
178 |
aggattttgcaaacatcatatttcata |
204 |
Q |
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| T |
25268290 |
aggattttgcaaacatcatatttcata |
25268316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 85 - 199
Target Start/End: Original strand, 37872262 - 37872377
Alignment:
| Q |
85 |
gttgaattaaaattgaggtatttggg-gatcaaacacaattcctacaagtcatttgagaaggctttagcactaaatcaagtatgctcttgtgttaggatt |
183 |
Q |
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|||||| |||||||||||||||| || |||| ||||||||| || ||||||||||||||| ||||| ||||||||||| |||| ||||||||||||||| |
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| T |
37872262 |
gttgaagtaaaattgaggtattttggcgatcgaacacaatttctgcaagtcatttgagaaacctttaccactaaatcaattatgttcttgtgttaggatt |
37872361 |
T |
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| Q |
184 |
ttgcaaacatcatatt |
199 |
Q |
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|||||| ||| ||||| |
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| T |
37872362 |
ttgcaaccatgatatt |
37872377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 79 - 203
Target Start/End: Original strand, 8366570 - 8366694
Alignment:
| Q |
79 |
attcatgttgaattaaaattgaggtatttggggatcaaacacaattcctacaagtcatttgagaaggctttagcactaaatcaagtatgctcttgtgtta |
178 |
Q |
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|||||||||||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8366570 |
attcatgttgaagtaaaattgagttattttgggattaaacacaattcctacaagtcatttgagaaggctttagcactaaatcaagtatgttcttgtgtta |
8366669 |
T |
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| Q |
179 |
ggattttgcaaacatcatatttcat |
203 |
Q |
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|||||||||||||||| |||||||| |
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| T |
8366670 |
ggattttgcaaacatcgtatttcat |
8366694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 84 - 199
Target Start/End: Original strand, 15176697 - 15176813
Alignment:
| Q |
84 |
tgttgaattaaaattgaggta-tttggggatcaaacacaattcctacaagtcatttgagaaggctttagcactaaatcaagtatgctcttgtgttaggat |
182 |
Q |
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||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| ||| |||| |||||||||| ||| |
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| T |
15176697 |
tgttgaagtaaaattgaggtactttggggatcgaacacaattcctacaagtcatttgagaagtctttaccactaaaccaattatgttcttgtgttaagat |
15176796 |
T |
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| Q |
183 |
tttgcaaacatcatatt |
199 |
Q |
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||||||||||| ||||| |
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| T |
15176797 |
tttgcaaacataatatt |
15176813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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