View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10111_low_7 (Length: 445)
Name: NF10111_low_7
Description: NF10111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10111_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 48008427 - 48008222
Alignment:
| Q |
1 |
tcctctcaaatattgatcccctactacatgatgcaacaaccgtaagaacttgtaaatccaaatagataatgttctctttagatctaacaattttcacggt |
100 |
Q |
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| T |
48008427 |
tcctgtcaaatattgatcccctactatatgatgcaacaaccgtaagaacttgtaaatctaaatagataatattctctgtagatctaacaatttccacggt |
48008328 |
T |
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| Q |
101 |
tgctgcaccatgcagctccaccatagttgtaaacagacacaaatatcacggtggactacaaactgtaattggagcttctaaaaaattattgtggataaac |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
48008327 |
tgctgcaccatgcagctcaaccatagttgtaaacagacactaatatcacggtggactagaaactgtaaatggagcttctaaaaaattattgtggataaac |
48008228 |
T |
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| Q |
201 |
actaac |
206 |
Q |
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|||||| |
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| T |
48008227 |
actaac |
48008222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 205 - 435
Target Start/End: Complemental strand, 48007930 - 48007707
Alignment:
| Q |
205 |
acataatggtagatctcatttgatg---gccatgcaagtctcatgtgcgagtgacatcaatgttagcacaatatttgactattattattagatggagaag |
301 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || | |
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| T |
48007930 |
acataatggtagatctcatttgatgatggccatgcaagtctcatgtgcgagtgacatcaatgttaacacaatatttgactattatta---------gatg |
48007840 |
T |
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| Q |
302 |
gagaaccaagaatgcatgaaagtaatagtttgaccatagacatcatcnnnnnnnaagaatcatattcgagaagctatttaacactaaatatgaacatttc |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48007839 |
gagaaccaagaatgcatgaaagtaatagtttgaccatatacatcatctttttt-aagaatcatattcgagaagctatttaacactaaatatgaacatttc |
48007741 |
T |
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| Q |
402 |
gtctgacacttttcactaaacctaatctcctttg |
435 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
48007740 |
gtctgacacttttcactaaacctaatctcctttg |
48007707 |
T |
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