View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10111_low_9 (Length: 432)

Name: NF10111_low_9
Description: NF10111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10111_low_9
NF10111_low_9
[»] chr5 (1 HSPs)
chr5 (1-419)||(13863528-13863946)
[»] chr4 (2 HSPs)
chr4 (1-255)||(56108049-56108302)
chr4 (75-179)||(20646544-20646648)
[»] chr6 (1 HSPs)
chr6 (1-255)||(26013816-26014069)
[»] chr7 (1 HSPs)
chr7 (1-255)||(6965321-6965573)
[»] chr2 (3 HSPs)
chr2 (1-255)||(26397743-26397996)
chr2 (51-255)||(25830300-25830503)
chr2 (69-210)||(26459772-26459919)
[»] scaffold0006 (1 HSPs)
scaffold0006 (1-255)||(277138-277391)
[»] scaffold0182 (1 HSPs)
scaffold0182 (1-255)||(30028-30281)
[»] chr3 (1 HSPs)
chr3 (24-255)||(33002059-33002289)
[»] chr1 (3 HSPs)
chr1 (68-210)||(845691-845832)
chr1 (103-255)||(30399995-30400145)
chr1 (103-255)||(30406552-30406702)


Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 13863528 - 13863946
Alignment:
Q  1 tgaaggtaggatgtgaggctagtttacgtattaaaagaatttgtgatgcgaaatggattgttcatagcttcattaaagaccacaatcatgaacttctttc 100  Q
    ||||||| ||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  13863528 tgaaggtgggatgcgaggctagtttacgtattaaaaaaaattgtgatgcgaaatggattgttcatagcttcattaaagaccacaatcacgaacttttttc 13863627  T
Q  101 agcatattcacattattttccttgccatagaggaatcaataaagctcaaaagcattctattgaaactttgcaccatgtttggagtgagaacaagcaaatt 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13863628 agcatattcacattattttccttgccatagagaaatcaataaagctcaaaagcattctattgaaactttgcaccatgtttggagtgagaacaagcaaatt 13863727  T
Q  201 ttttgccacaatggccaaagaatatgaaagatatgaaaacattggttgcttggaggatatgaaagatgttgtgaaaattcaataaaagagtatgattcaa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13863728 ttttgccacaatggccaaagaatatgaaagatatgaaaacattggttgcttggaggatatgaaagatgttgtgaaaattcaataaaagggtatgattcaa 13863827  T
Q  301 tttcttctttcgtatgaatttgaacagaatttcatgaactcaaaccaaaccaagttgagctacacatcctcaccttatagccatacaaattctctttaaa 400  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13863828 tttcttctttcgtatgaatttgaacagaatttcattaactcaaaccaaaccaagttgagctacacatcctcaccttatagccctacaaattctctttaaa 13863927  T
Q  401 cggtgtgggacttcagcct 419  Q
    |||||||||||||||||||    
T  13863928 cggtgtgggacttcagcct 13863946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 56108049 - 56108302
Alignment:
Q  1 tgaaggtaggatgtgaggctagtttacgtattaaaagaatttgtgatgcgaaatggattgttcatagcttcattaaagaccacaatcatgaacttctttc 100  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||| || |    
T  56108049 tgaaggtgggatgtgaggctagtttacgtgttaaaagaatttgtgatggaaaatggattgttcatagcttcattaaagaccacaatcacgaactttttcc 56108148  T
Q  101 agcatattcacattattttccttgccatagaggaatcaataaagctcaaaagcattctattgaaactttgcaccatgtttggagtgagaacaagcaaatt 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  56108149 agcatatgcacattattttccttgccatagaggaatcaataaagctcaaaagcattctattgaaactttgcaccatg-ttggagtgagaacaagcaaaat 56108247  T
Q  201 ttttgccacaatggccaaagaatatgaaagatatgaaaacattggttgcttggag 255  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  56108248 ttttgccacaatggccaaagaatatggaggatatgaaaacattggttgcttggag 56108302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 75 - 179
Target Start/End: Complemental strand, 20646648 - 20646544
Alignment:
Q  75 aaagaccacaatcatgaacttctttcagcatattcacattattttccttgccatagaggaatcaataaagctcaaaagcattctattgaaactttgcacc 174  Q
    ||||| ||||||||||| ||| || |||||||| | ||||||||||||||||||||| |||||||| |||||||||| || | ||||||||||||||| |    
T  20646648 aaagatcacaatcatgatctttttccagcatatgcgcattattttccttgccatagaagaatcaatcaagctcaaaaacaatgtattgaaactttgcaac 20646549  T
Q  175 atgtt 179  Q
    |||||    
T  20646548 atgtt 20646544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 26013816 - 26014069
Alignment:
Q  1 tgaaggtaggatgtgaggctagtttacgtattaaaagaatttgtgatgcgaaatggattgttcatagcttcattaaagaccacaatcatgaacttctttc 100  Q
    ||||||| |||||||||||||||||| || ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||  ||||| || |    
T  26013816 tgaaggtgggatgtgaggctagtttatgtgttaaaagaatttgtgatggaaaatggattgttcatagcttcattaaagaccacaatcacaaactttttcc 26013915  T
Q  101 agcatattcacattattttccttgccatagaggaatcaataaagctcaaaagcattctattgaaactttgcaccatgtttggagtgagaacaagcaaatt 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  26013916 agcatatgcacattattttccttgccatagaggaatcaataaagctcaaaagcattctattgaaactttgcaccatg-ttggagtgagaacaagcaaatt 26014014  T
Q  201 ttttgccacaatggccaaagaatatgaaagatatgaaaacattggttgcttggag 255  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  26014015 ttttgccacaatggccaaagaatatggaggatatgaaaacattggttgcttggag 26014069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 6965321 - 6965573
Alignment:
Q  1 tgaaggtaggatgtgaggctagtttacgtattaaaagaatttgtgatgcgaaatggattgttcatagcttcattaaagaccacaatcatgaacttctttc 100  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||   ||||| ||      
T  6965321 tgaaggtgggatgtgaggctagtttacgtgttaaaagaatttgtgatggaaaatggattgttcatagcttcattaaagaccacaatcccaaactttttct 6965420  T
Q  101 agcatattcacattattttccttgccatagaggaatcaataaagctcaaaagcattctattgaaactttgcaccatgtttggagtgagaacaagcaaatt 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  6965421 agcatatgcacattattttccttgccatagaggaatcaataaagctcaaaagcattctattgaaactttgcaccatg-ttggagtgagaacaagcaaatt 6965519  T
Q  201 ttttgccacaatggccaaagaatatgaaagatatgaaaacattggttgcttggag 255  Q
    |||||||||||||||||||||||||| | |||||| |||||||||||||||||||    
T  6965520 ttttgccacaatggccaaagaatatggaggatatg-aaacattggttgcttggag 6965573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 26397996 - 26397743
Alignment:
Q  1 tgaaggtaggatgtgaggctagtttacgtattaaaagaatttgtgatgcgaaatggattgttcatagcttcattaaagaccacaatcatgaacttctttc 100  Q
    ||||||| | |||||||||| | |||| |||||||||||  |||||||  |||||| | || ||| ||||||| ||||| ||||||||||||||| || |    
T  26397996 tgaaggtggaatgtgaggctggcttacatattaaaagaagatgtgatggaaaatgggtggtccatggcttcatcaaagatcacaatcatgaactttttcc 26397897  T
Q  101 agcatattcacattattttccttgccatagaggaatcaataaagctcaaaagcattctattgaaactttgcaccatgtttggagtgagaacaagcaaatt 200  Q
    | ||||| ||||||||||||| |||||||||  |||||||||||||||| || ||| ||||||||||||||| |||| |||||||||||||||||||| |    
T  26397896 aacatatgcacattattttccatgccatagaacaatcaataaagctcaacagaattgtattgaaactttgcaacatg-ttggagtgagaacaagcaaaat 26397798  T
Q  201 ttttgccacaatggccaaagaatatgaaagatatgaaaacattggttgcttggag 255  Q
     |||||||||||||||||| || | | ||||||||| ||  ||||||||||||||    
T  26397797 ctttgccacaatggccaaacaacacggaagatatgagaaagttggttgcttggag 26397743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 51 - 255
Target Start/End: Complemental strand, 25830503 - 25830300
Alignment:
Q  51 aaatggattgttcatagcttcattaaagaccacaatcatgaacttctttcagcatattcacattattttccttgccatagaggaatcaataaagctcaaa 150  Q
    |||||||||||||||||||| |||||||| ||||||||| |  || || || ||||| ||||||||||| |||| |||||| ||||||||||  ||||||    
T  25830503 aaatggattgttcatagcttaattaaagatcacaatcataaggtttttccaacatatgcacattatttttcttgtcatagaagaatcaataagtctcaaa 25830404  T
Q  151 agcattctattgaaactttgcaccatgtttggagtgagaacaagcaaattttttgccacaatggccaaagaatatgaaagatatgaaaacattggttgct 250  Q
    || | | |||||||||||| || |||| |||| |||| ||||| | || |||| ||||||||||||||| || ||| | | |||||||||||| | ||||    
T  25830403 agaactgtattgaaactttacaacatg-ttggggtgaaaacaaccgaaattttcgccacaatggccaaacaacatggagggtatgaaaacattagctgct 25830305  T
Q  251 tggag 255  Q
    |||||    
T  25830304 tggag 25830300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 69 - 210
Target Start/End: Original strand, 26459772 - 26459919
Alignment:
Q  69 ttcattaaagaccacaatcatgaacttctttcagcatattcacattattttccttgccatagaggaatcaataaagctcaaaagcatt-------ctatt 161  Q
    ||||| ||||| ||||||||||| ||| || |||||||| | ||||||||||||||||||||| |||||||||||||||||||||| |        ||||    
T  26459772 ttcatcaaagatcacaatcatgatctttttccagcatatgcgcattattttccttgccatagaagaatcaataaagctcaaaagcaatgtattgattatt 26459871  T
Q  162 gaaactttgcaccatgtttggagtgagaacaagcaaattttttgccaca 210  Q
    ||||||||||| |||| |||| |||| | ||||||||||||||||||||    
T  26459872 gaaactttgcaacatg-ttggtgtgaaaccaagcaaattttttgccaca 26459919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 277391 - 277138
Alignment:
Q  1 tgaaggtaggatgtgaggctagtttacgtattaaaagaatttgtgatgcgaaatggattgttcatagcttcattaaagaccacaatcatgaacttctttc 100  Q
    ||||||| | |||||||||| | |||| |||||||||||  |||||||  |||||| | || ||| |||| || ||||| ||||||||||||||| || |    
T  277391 tgaaggtggaatgtgaggctggcttacatattaaaagaagatgtgatggaaaatgggtggtccatggcttaatcaaagatcacaatcatgaactttttcc 277292  T
Q  101 agcatattcacattattttccttgccatagaggaatcaataaagctcaaaagcattctattgaaactttgcaccatgtttggagtgagaacaagcaaatt 200  Q
    | ||||| ||||||||||||| |||||||||  |||||||||||||||| || ||| ||||||||||||||| |||| |||||||||||||||||||| |    
T  277291 aacatatgcacattattttccatgccatagaacaatcaataaagctcaacagaattgtattgaaactttgcaacatg-ttggagtgagaacaagcaaaat 277193  T
Q  201 ttttgccacaatggccaaagaatatgaaagatatgaaaacattggttgcttggag 255  Q
     |||||||||||||||||| || | | ||||||||| ||  ||||||||||||||    
T  277192 ctttgccacaatggccaaacaacacggaagatatgagaaagttggttgcttggag 277138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 30281 - 30028
Alignment:
Q  1 tgaaggtaggatgtgaggctagtttacgtattaaaagaatttgtgatgcgaaatggattgttcatagcttcattaaagaccacaatcatgaacttctttc 100  Q
    ||||||| | |||||||||| | |||| ||||| |||||  |||||||  |||||| | || ||| |||| || ||||| ||||||||||||||| || |    
T  30281 tgaaggtggaatgtgaggctggcttacatattagaagaagatgtgatggaaaatgggtggtccatggcttgatcaaagatcacaatcatgaactttttcc 30182  T
Q  101 agcatattcacattattttccttgccatagaggaatcaataaagctcaaaagcattctattgaaactttgcaccatgtttggagtgagaacaagcaaatt 200  Q
    | ||||| |||||||||||||||||||||||  |||||||||||||||| || ||| ||||||||||||||| |||| |||||||||||||||||||| |    
T  30181 aacatatgcacattattttccttgccatagaacaatcaataaagctcaacagaattgtattgaaactttgcaacatg-ttggagtgagaacaagcaaaat 30083  T
Q  201 ttttgccacaatggccaaagaatatgaaagatatgaaaacattggttgcttggag 255  Q
     |||||||||||||||||| || | | | ||||||| ||  ||||||||||||||    
T  30082 ctttgccacaatggccaaacaacacggaggatatgagaaagttggttgcttggag 30028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 24 - 255
Target Start/End: Original strand, 33002059 - 33002289
Alignment:
Q  24 ttacgtattaaaagaatttgtgatgcgaaatggattgttcatagcttcattaaagaccacaatcatgaacttctttcagcatattcacattattttcctt 123  Q
    ||||| || |||| || ||||||||  ||||||||||||||||||||||||||||| |||||||||||  || || || ||||| |||||||||||||||    
T  33002059 ttacgcatcaaaataaattgtgatggaaaatggattgttcatagcttcattaaagatcacaatcatgaggtttttccaacatatgcacattattttcctt 33002158  T
Q  124 gccatagaggaatcaataaagctcaaaagcattctattgaaactttgcaccatgtttggagtgagaacaagcaaattttttgccacaatggccaaagaat 223  Q
    |||||||| ||||||||||  |||||||| | | |||||||||||| || |||| |||| |||| ||||| |||| |||| ||||||||||||||| ||     
T  33002159 gccatagaagaatcaataagtctcaaaagaactgtattgaaactttacaacatg-ttggggtgaaaacaaccaaaattttcgccacaatggccaaacaac 33002257  T
Q  224 atgaaagatatgaaaacattggttgcttggag 255  Q
    ||| | | |||||||||||||| |||||||||    
T  33002258 atggagggtatgaaaacattggatgcttggag 33002289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 68 - 210
Target Start/End: Complemental strand, 845832 - 845691
Alignment:
Q  68 cttcattaaagaccacaatcatgaacttctttcagcatattcacattattttccttgccatagaggaatcaataaagctcaaaagcattctattgaaact 167  Q
    |||||| ||||| ||||||||||| ||| || |||||||| | |||||||||| |||||||||| |||||||| ||||||||||||| | ||||||||||    
T  845832 cttcatcaaagatcacaatcatgatctttttccagcatatgcgcattattttctttgccatagaagaatcaatcaagctcaaaagcaatgtattgaaact 845733  T
Q  168 ttgcaccatgtttggagtgagaacaagcaaattttttgccaca 210  Q
    ||||| |||  |||| |||||| |||||||| |||||||||||    
T  845732 ttgcaacat-attggtgtgagaccaagcaaaatttttgccaca 845691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 103 - 255
Target Start/End: Original strand, 30399995 - 30400145
Alignment:
Q  103 catattcacattattttccttgccatagaggaatcaataaagctcaaaagcattctattgaaactttgcaccatgtttggagtgagaacaagcaaatttt 202  Q
    ||||| |||||||||||||||| |||||| |||||||| ||||||||||| ||| ||||||||||||||| |||| |||| |||| ||||| |||| |||    
T  30399995 catatgcacattattttccttgtcatagaagaatcaat-aagctcaaaagaattgtattgaaactttgcaacatg-ttggggtgaaaacaaccaaaattt 30400092  T
Q  203 ttgccacaatggccaaagaatatgaaagatatgaaaacattggttgcttggag 255  Q
      | || |  | ||||| || ||| | ||||||||||||||||||||||||||    
T  30400093 acgtcatagcgaccaaacaacatggatgatatgaaaacattggttgcttggag 30400145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 103 - 255
Target Start/End: Original strand, 30406552 - 30406702
Alignment:
Q  103 catattcacattattttccttgccatagaggaatcaataaagctcaaaagcattctattgaaactttgcaccatgtttggagtgagaacaagcaaatttt 202  Q
    ||||| |||||||||||||||| |||||| |||||||| ||||||||||| ||| ||||||||||||||| |||| |||| |||| ||||| |||| |||    
T  30406552 catatgcacattattttccttgtcatagaagaatcaat-aagctcaaaagaattgtattgaaactttgcaacatg-ttggggtgaaaacaaccaaaattt 30406649  T
Q  203 ttgccacaatggccaaagaatatgaaagatatgaaaacattggttgcttggag 255  Q
      | || |  | ||||| || ||| | ||||||||||||||||||||||||||    
T  30406650 acgtcatagcgaccaaacaacatggatgatatgaaaacattggttgcttggag 30406702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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