View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10112_high_1 (Length: 392)
Name: NF10112_high_1
Description: NF10112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10112_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 49411342 - 49410966
Alignment:
| Q |
1 |
ctatgcttacccctagccattcttttcaccatcacaatcaaaactacaacaacaaccacttcctcctccaccatgcacatccctaaaaaatcaaacccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49411342 |
ctatgcttacccctagccattcttttcaccatcacaatcacaactacaacaacaaccacttcctcctccaccatgcacatccctaaaaaatcaaacccaa |
49411243 |
T |
|
| Q |
101 |
acctcacaaccactttcttaagtataaatactcaacacgacaaccaatcaaacaaaccaacaacaatagacgaatacaaagaagaggaaacgttgttcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49411242 |
acctcacaaccactttcttaagtataaatactcaacacaacaaccaatcaaacaaaccaacaacaatagacgaatacaaagaagaggaaacgttgttcat |
49411143 |
T |
|
| Q |
201 |
tgtagccaaccatacaaagcgaaaagcaacatggccaagaaaattagcattcatgttcttaacaacaactcctcttccatttgcttcattatgggaatct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49411142 |
tgtagccaaccatacaaagcgaaaagcaacatggccaagaaaattagcattcatgttcttaacaacaactcctcttccatttgcttcattatgggaatct |
49411043 |
T |
|
| Q |
301 |
tacttcaaccaaatcccnnnnnnnttgtataatatctacattcatgctgacccaacattctcttacgaccctccttt |
377 |
Q |
| |
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||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49411042 |
tacttcaaccaaatcccaaaaaaattgtacaatatctacattcatgctgacccaacattctcttacgaccctccttt |
49410966 |
T |
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