View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10112_high_5 (Length: 241)
Name: NF10112_high_5
Description: NF10112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10112_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 12 - 223
Target Start/End: Complemental strand, 6164722 - 6164511
Alignment:
| Q |
12 |
caaaggggaaaatgcagcaagcccaggcagctatccacgcaggcacagcagtnnnnnnncacctcccctactgctgcatccatctcagccgactgggagt |
111 |
Q |
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| T |
6164722 |
caaaggggaaaatgcagcaagcccaggcagctatccacgcaggcacagcagtaaaaaaacacctcccctactgctgcatccatctcagccgactgggagt |
6164623 |
T |
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| Q |
112 |
ccttcgaaggcaccattgtagattccaagtccactcaaaaaacatacaaaccgggatgcgcattctacccaacacccacttccaagccatgactttcacc |
211 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6164622 |
ccttcgaaggcaccattgtggattccaagtccactcaaaaaacatacaaaccgggatgcgcattctacccaacacccacttccaagccatgactttcacc |
6164523 |
T |
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| Q |
212 |
tcttccaaaata |
223 |
Q |
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||||||| |||| |
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| T |
6164522 |
tcttccacaata |
6164511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 14732903 - 14732955
Alignment:
| Q |
148 |
aaaaaacatacaaaccgggatgcgcattctacccaacacccacttccaagcca |
200 |
Q |
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| T |
14732903 |
aaaaaacatacaaaccggaatgcgcgtccgacccaacacccacctccaagcca |
14732955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 26447025 - 26447101
Alignment:
| Q |
142 |
ccactcaaaaaacatacaaaccgggatgcgcattctacccaacacccacttccaagccatgactttcacctcttcca |
218 |
Q |
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| T |
26447025 |
ccactcaaaaaataagcaaaccggaatacgcattctacacatcgcccacttccaagccaacactttcaccttttcca |
26447101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 218
Target Start/End: Complemental strand, 368548 - 368471
Alignment:
| Q |
141 |
tccactcaaaaaacatacaaaccgggatgcgcattctacccaacacccacttccaagccatgactttcacctcttcca |
218 |
Q |
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||||||| ||| ||| | ||||||||||| ||| |||||| | |||||| |||||||| ||||||||||||| |||| |
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| T |
368548 |
tccactcgaaatacaaagaaaccgggatgtgcaatctacctatgacccacctccaagccttgactttcacctcctcca |
368471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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