View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10112_low_1 (Length: 677)

Name: NF10112_low_1
Description: NF10112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10112_low_1
NF10112_low_1
[»] chr7 (4 HSPs)
chr7 (12-622)||(39954595-39955205)
chr7 (255-569)||(10575262-10575576)
chr7 (302-374)||(354475-354547)
chr7 (457-531)||(354317-354391)
[»] chr4 (3 HSPs)
chr4 (254-549)||(53328609-53328904)
chr4 (278-564)||(22898433-22898719)
chr4 (278-564)||(22950101-22950387)
[»] chr5 (1 HSPs)
chr5 (254-565)||(26358540-26358851)
[»] chr3 (7 HSPs)
chr3 (255-567)||(24919879-24920191)
chr3 (255-567)||(24981923-24982235)
chr3 (263-567)||(25084915-25085219)
chr3 (269-567)||(24923467-24923765)
chr3 (255-567)||(31825550-31825862)
chr3 (278-567)||(21584613-21584902)
chr3 (263-567)||(24497260-24497564)
[»] chr2 (1 HSPs)
chr2 (272-564)||(41027452-41027744)
[»] chr8 (1 HSPs)
chr8 (255-567)||(14261025-14261337)


Alignment Details
Target: chr7 (Bit Score: 595; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 12 - 622
Target Start/End: Original strand, 39954595 - 39955205
Alignment:
Q  12 gagatgaaacaaatgtaaaattcaaacagattatattctcacaaaattaaaagtaaaagcaaatgtgctaggttcaaagtaatttcagcaaagacaaaat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39954595 gagatgaaacaaatgtaaaattcaaacagattatattctcacaaaattaaaagtaaaagcaaatgtgctaggttcaaagtaatttcagcaaagacaaaat 39954694  T
Q  112 tcattcattcatcgttaagaattaagatacaagtccaaatactagaaccacagaactaagcattcaaccagatctaagactactaaatttatattaacca 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  39954695 tcattcattcatcgttaagaattaagatacaagtccaaatactagaaccacaggactaagcattcaaccagatctaagactactaaatttatattaacca 39954794  T
Q  212 gatttagaactaaatcgaccagaacaaactaaaccctaaatttaaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatcca 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39954795 gatttagaactaaatcgaccagaacaaactaaaccctaaatttaaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatcca 39954894  T
Q  312 tggcggtaacagttttcctcctagcatgctcagtgtaagtaacagcatcacgaatcacattctcaagaaagatcttgagaacaccgcgagtctcttcgta 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39954895 tggcggtaacagttttcctcctagcatgctcagtgtaagtaacagcatcacgaatcacattctcaagaaagatcttgagaacaccgcgagtctcttcgta 39954994  T
Q  412 gatgagaccgctaattctcttcacaccaccacgccttgcaagacgacgaatcgcaggcttggttatgccttggatgttatcgcgaagaacctttctgtgc 511  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39954995 gatgagaccgctgattctcttcacaccaccacgccttgcaagacgacgaatcgcaggcttggttatgccttggatgttgtcgcgaagaacctttctgtgc 39955094  T
Q  512 ctctttgctcctccctttcccaatccctttcctccttttccacgacctgacatttttgcagagaatgaagaaaatggatttttcttaagattatgaaatt 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39955095 ctctttgctcctccctttcccaatccctttcctccttttccacgacctgacatttttgcagagaatgaagaaaatggatttttcttaagattatgaaatt 39955194  T
Q  612 actacaagatt 622  Q
    |||| ||||||    
T  39955195 actagaagatt 39955205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 255 - 569
Target Start/End: Complemental strand, 10575576 - 10575262
Alignment:
Q  255 aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac 354  Q
    ||||||||||||| ||||| || ||||| || ||||| || || || ||||||||||| || || |||||||||||||| ||||||||||||||||||||    
T  10575576 aaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtcacagttttcctcctcgcatgctcagtgtaagtaac 10575477  T
Q  355 agcatcacgaatcacattctcaagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctaattctcttcacaccaccacgccttgcaaga 454  Q
    |||||| |  || |||||||| |  |||||||| |  ||||| |  || || || ||||| |  || || ||||| |||||||| || |  || || |      
T  10575476 agcatctcttataacattctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgattcttttcacacctcctcttctcgccaat 10575377  T
Q  455 cgacgaatcgcaggcttggttatgccttggatgttatcgcgaagaacctttctgtgcctctttgctcctccctttcccaatccctttcctccttttccac 554  Q
    ||||||||||| ||||| || || ||||||||||| || || |||||||| |  || |||||||| || |||||||| ||||| || ||||| |||||||    
T  10575376 cgacgaatcgctggctttgtgattccttggatgttgtcacggagaaccttgcgatgtctctttgcacccccctttcctaatcctttacctccctttccac 10575277  T
Q  555 gacctgacatttttg 569  Q
    |||| ||||||||||    
T  10575276 gaccagacatttttg 10575262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 302 - 374
Target Start/End: Complemental strand, 354547 - 354475
Alignment:
Q  302 acaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaacagcatcacgaatcacattct 374  Q
    ||||||||||| || || | ||| |||||||| |||||||||||||||||||||||||||| |||| ||||||    
T  354547 acaacatccatagcagtcagagtcttcctccttgcatgctcagtgtaagtaacagcatcacaaatctcattct 354475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 457 - 531
Target Start/End: Complemental strand, 354391 - 354317
Alignment:
Q  457 acgaatcgcaggcttggttatgccttggatgttatcgcgaagaacctttctgtgcctctttgctcctccctttcc 531  Q
    ||||||||| ||||| ||||| ||||| |||||| ||| ||||||||| || || | |||||| |||||||||||    
T  354391 acgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgctatgtcactttgcacctccctttcc 354317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 3e-68; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 254 - 549
Target Start/End: Complemental strand, 53328904 - 53328609
Alignment:
Q  254 taaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaa 353  Q
    ||||| ||||||||||| |||||||||||||||||||||||||| || ||||||||||| || |||||||| || |  | ||||||||| ||||| || |    
T  53328904 taacccccgaaaccgtaaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtatgtga 53328805  T
Q  354 cagcatcacgaatcacattctcaagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctaattctcttcacaccaccacgccttgcaag 453  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||| ||||| ||||| |  || || || | ||||||||||||||| ||||| ||    
T  53328804 cagcatcacgaatcacattctcaagaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcacaccaccacgtcttgcgag 53328705  T
Q  454 acgacgaatcgcaggcttggttatgccttggatgttatcgcgaagaacctttctgtgcctctttgctcctccctttcccaatccctttcctccttt 549  Q
    |||||||||||||||||| || || || |||||||||||||| |||||||| | ||| |  || ||||| |||||||| || ||||||||||||||    
T  53328704 acgacgaatcgcaggctttgtgattccctggatgttatcgcgcagaaccttacggtgtcgtttcgctccaccctttcctaaaccctttcctccttt 53328609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 278 - 564
Target Start/End: Complemental strand, 22898719 - 22898433
Alignment:
Q  278 cttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaacagcatcacgaatcacattctcaa 377  Q
    |||||||| |||||||| ||||| || |||||||| || ||||| || ||||| ||||| |||||||||||||| |||||||| | |||||||||||| |    
T  22898719 cttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacattctcca 22898620  T
Q  378 gaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctaattctcttcacaccaccacgccttgcaagacgacgaatcgcaggcttggttat 477  Q
     ||| ||||| |  || || || ||||| || || || | ||| || || | |||||| || || |  |  ||||||||||||||||| ||||| |||||    
T  22898619 aaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgatacgcttcactcctcctctacgagcaagacgacgaatcgctggctttgttat 22898520  T
Q  478 gccttggatgttatcgcgaagaacctttctgtgcctctttgctcctccctttcccaatccctttcctccttttccacgacctgacat 564  Q
     || |||||||| || ||||| ||||| |  || | ||||||||| ||||||||||| |||||||| ||||||||||| || |||||    
T  22898519 tccctggatgttgtcacgaagcaccttacgatgtcgctttgctccaccctttcccaaaccctttccaccttttccacgcccagacat 22898433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 278 - 564
Target Start/End: Complemental strand, 22950387 - 22950101
Alignment:
Q  278 cttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaacagcatcacgaatcacattctcaa 377  Q
    |||||||| |||||||| ||||| || |||||||| || ||||| || ||||| ||||| |||||||||||||| |||||||| | |||||||||||| |    
T  22950387 cttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacattctcca 22950288  T
Q  378 gaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctaattctcttcacaccaccacgccttgcaagacgacgaatcgcaggcttggttat 477  Q
     ||| ||||| |  || || || ||||| || || || | ||| || || | |||||| || || |  |  ||||||||||||||||| ||||| |||||    
T  22950287 aaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgatacgcttcactcctcctctacgagcaagacgacgaatcgctggctttgttat 22950188  T
Q  478 gccttggatgttatcgcgaagaacctttctgtgcctctttgctcctccctttcccaatccctttcctccttttccacgacctgacat 564  Q
     || |||||||| || ||||| ||||| |  || | ||||||||| ||||||||||| |||||||| ||||||||||| || |||||    
T  22950187 tccctggatgttgtcacgaagcaccttacgatgtcgctttgctccaccctttcccaaaccctttccaccttttccacgcccagacat 22950101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 116; Significance: 1e-58; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 254 - 565
Target Start/End: Original strand, 26358540 - 26358851
Alignment:
Q  254 taaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaa 353  Q
    ||||| || ||||| || || |||||||| ||||||||||| ||||| ||||||||||| || ||||| ||||| |  | |||||| ||||||||||| |    
T  26358540 taacccccaaaaccataaagggtccttccttgcctcttgagcgcataaacaacatccatagcagtaactgttttgcgacgagcatgttcagtgtaagtga 26358639  T
Q  354 cagcatcacgaatcacattctcaagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctaattctcttcacaccaccacgccttgcaag 453  Q
    ||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||| ||||| ||||| || || |  || ||||||||||||||||||||    
T  26358640 cagcatcacgaataacattctcaagaaatatcttgagaacaccacgagtttcttcatagatcagaccactgatacgttttacaccaccacgccttgcaag 26358739  T
Q  454 acgacgaatcgcaggcttggttatgccttggatgttatcgcgaagaacctttctgtgcctctttgctcctccctttcccaatccctttcctccttttcca 553  Q
    |||||||||||| || ||||| || || || |||||||| |||||||| || |  || | |||||| || |||||||| || |||||||||||||||||     
T  26358740 acgacgaatcgcgggtttggtaattccctgaatgttatctcgaagaactttgcgatgacgctttgcaccaccctttcctaaaccctttcctccttttcct 26358839  T
Q  554 cgacctgacatt 565  Q
    |  |||||||||    
T  26358840 cttcctgacatt 26358851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 7e-57; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 255 - 567
Target Start/End: Original strand, 24919879 - 24920191
Alignment:
Q  255 aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac 354  Q
    |||| ||||| || ||||| || |||||||||||||| | |||||| || ||||||||||| || || || ||||||||||| ||||||||||| || ||    
T  24919879 aacctccgaatccatagagggttcttccctgcctcttcaaagcatagacgacatccatggctgtcactgtcttcctcctagcgtgctcagtgtatgtcac 24919978  T
Q  355 agcatcacgaatcacattctcaagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctaattctcttcacaccaccacgccttgcaaga 454  Q
    |||||||||||| |||||||| |  |||||||| |  ||||| |  || ||||| ||||| | |||||| ||||||||||||||||| |  ||||| |      
T  24919979 agcatcacgaatgacattctctaagaagatcttcaagacacctctggtttcttcatagatcaaaccgctgattctcttcacaccacctcttcttgccaat 24920078  T
Q  455 cgacgaatcgcaggcttggttatgccttggatgttatcgcgaagaacctttctgtgcctctttgctcctccctttcccaatccctttcctccttttccac 554  Q
    |||||||| ||||||||||| || || ||||||||||| |||||||| || || ||||||||||| |||||||||||||||||||| ||||| |||||||    
T  24920079 cgacgaattgcaggcttggtgataccctggatgttatcacgaagaactttcctatgcctctttgcacctccctttcccaatcccttacctccctttccac 24920178  T
Q  555 gacctgacatttt 567  Q
    | || ||||||||    
T  24920179 ggccagacatttt 24920191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 255 - 567
Target Start/End: Complemental strand, 24982235 - 24981923
Alignment:
Q  255 aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac 354  Q
    ||||||||||||| ||||| || ||||| || ||||| | |||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| |||||    
T  24982235 aaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaac 24982136  T
Q  355 agcatcacgaatcacattctcaagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctaattctcttcacaccaccacgccttgcaaga 454  Q
     |||||||| || |||||||| |  |||||||| |  ||||| |  || ||||| || || | ||| || |||||||| |||||||| |  ||||| |      
T  24982135 tgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttaacaccacctcttcttgccaat 24982036  T
Q  455 cgacgaatcgcaggcttggttatgccttggatgttatcgcgaagaacctttctgtgcctctttgctcctccctttcccaatccctttcctccttttccac 554  Q
    |||||||| ||||||||||| || || ||||||||||| |||||||| || || ||||||||||| ||||||||||| | |||||| |||||||||||||    
T  24982035 cgacgaatagcaggcttggtgataccctggatgttatcacgaagaactttcctatgcctctttgcacctccctttcctagtcccttacctccttttccac 24981936  T
Q  555 gacctgacatttt 567  Q
    | |||||||||||    
T  24981935 gccctgacatttt 24981923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 263 - 567
Target Start/End: Complemental strand, 25085219 - 25084915
Alignment:
Q  263 aaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaacagcatcac 362  Q
    ||||| ||||| || |||||||| ||||| | |||||| |||||||||||||| || ||||| |||||||| || ||||||||||| ||||| |||||||    
T  25085219 aaaccatagagggttcttccctgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtgtatgtaactgcatcac 25085120  T
Q  363 gaatcacattctcaagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctaattctcttcacaccaccacgccttgcaagacgacgaat 462  Q
    | ||||||||||| |  |||||||| |  ||||| |  || ||||| || || | ||| || ||||||||||||||||| |  || || |  | ||||||    
T  25085119 ggatcacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttcacaccacctcttctcgccaatctacgaat 25085020  T
Q  463 cgcaggcttggttatgccttggatgttatcgcgaagaacctttctgtgcctctttgctcctccctttcccaatccctttcctccttttccacgacctgac 562  Q
     ||||||||||| || || ||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||||||    
T  25085019 ggcaggcttggtgataccctggatgttatcacgaagaacctttctatgcctctttgcacctccctttcccaatcccttacctccctttccacgacctgac 25084920  T
Q  563 atttt 567  Q
    |||||    
T  25084919 atttt 25084915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 269 - 567
Target Start/End: Original strand, 24923467 - 24923765
Alignment:
Q  269 tagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaacagcatcacgaatca 368  Q
    ||||| || |||||||| ||||| | |||||| |||||||||||||| || || || |||||||| || ||||||||||| || |||||||||||||| |    
T  24923467 tagagggttcttccctgtctcttcaaagcatagacaacatccatggctgtcactgtcttcctccttgcgtgctcagtgtatgtcacagcatcacgaatga 24923566  T
Q  369 cattctcaagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctaattctcttcacaccaccacgccttgcaagacgacgaatcgcagg 468  Q
    ||||||| |  |||||||| |  ||||| |  || ||||| ||||| | ||| || |||||||| |||||||| |  ||||| |  |||||||| |||||    
T  24923567 cattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttcttgccaatcgacgaatagcagg 24923666  T
Q  469 cttggttatgccttggatgttatcgcgaagaacctttctgtgcctctttgctcctccctttcccaatccctttcctccttttccacgacctgacatttt 567  Q
    |||||| || || ||||||||||| |||||||||||||| ||||||||||| ||||||||||| | |||||| ||||| || |||||||||||||||||    
T  24923667 cttggtgataccctggatgttatcacgaagaacctttctatgcctctttgcacctccctttccgagtcccttacctcccttaccacgacctgacatttt 24923765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 255 - 567
Target Start/End: Original strand, 31825550 - 31825862
Alignment:
Q  255 aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac 354  Q
    |||| ||||| || ||||| || |||||||||||||| | |||||| ||||||||||| |||||||| || ||||||||||| ||||||||||| || ||    
T  31825550 aacctccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtgac 31825649  T
Q  355 agcatcacgaatcacattctcaagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctaattctcttcacaccaccacgccttgcaaga 454  Q
     |||||||| || |||||||| |  |||||||| |  ||||| | ||| ||||| ||||| | ||| || || |||||||||||||| |  || || |      
T  31825650 cgcatcacggatgacattctccaagaagatcttcaagacacctctagtttcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaat 31825749  T
Q  455 cgacgaatcgcaggcttggttatgccttggatgttatcgcgaagaacctttctgtgcctctttgctcctccctttcccaatccctttcctccttttccac 554  Q
    |||||||| |||||||| || || || |||||||| ||||| ||||| ||||||||||| ||||| ||||||||||| |  ||||| ||||| || ||||    
T  31825750 cgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcctttttgcacctccctttcctagccccttacctcccttaccac 31825849  T
Q  555 gacctgacatttt 567  Q
    |||||||||||||    
T  31825850 gacctgacatttt 31825862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 278 - 567
Target Start/End: Original strand, 21584613 - 21584902
Alignment:
Q  278 cttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaacagcatcacgaatcacattctc-a 376  Q
    ||||| |||||||| | |||||| ||||||||||| || || ||||| |||||||| |||||||||||||| ||||| |||||||||||||||||||| |    
T  21584613 cttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctccttgcatgctcagtgtacgtaaccgcatcacgaatcacattctcca 21584712  T
Q  377 agaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctaattctcttcacaccaccacgccttgcaagacgacgaatcgcaggcttggtta 476  Q
    ||||| ||||| ||||| || |  || || || || || | ||| || |||||||| |||||||| |  || || |  ||||||||||| |||||||| |    
T  21584713 agaaa-atcttaagaactcctcttgtttcctcataaatcaaaccactgattctcttaacaccacctcttctcgccaatcgacgaatcgctggcttggtga 21584811  T
Q  477 tgccttggatgttatcgcgaagaacctttctgtgcctctttgctcctccctttcccaatccctttcctccttttccacgacctgacatttt 567  Q
    | || || |||||||| |||||||| || ||||| |||||||| ||||||||||| | |||||| ||||| ||||||||||||||||||||    
T  21584812 ttccctgaatgttatcacgaagaactttcctgtgtctctttgcacctccctttcctagtcccttacctccctttccacgacctgacatttt 21584902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 263 - 567
Target Start/End: Original strand, 24497260 - 24497564
Alignment:
Q  263 aaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaacagcatcac 362  Q
    ||||| ||||| || ||||| || ||||| | |||||| |||||||||||||| || ||||| |||||||| || ||||||||||| ||||| |||||||    
T  24497260 aaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtgtatgtaactgcatcac 24497359  T
Q  363 gaatcacattctcaagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctaattctcttcacaccaccacgccttgcaagacgacgaat 462  Q
    | |||||||| || |  |||||||| |  ||||| |  || ||||| ||||| |  || || |||||||| |||||||| |  ||||| |  ||||||||    
T  24497360 ggatcacattttccaagaagatcttcaagacacctctggtttcttcatagatcaatccactgattctcttaacaccacctcttcttgccaatcgacgaat 24497459  T
Q  463 cgcaggcttggttatgccttggatgttatcgcgaagaacctttctgtgcctctttgctcctccctttcccaatccctttcctccttttccacgacctgac 562  Q
     ||||||||||| || || |||||||| || ||||||||||| || ||||||||||| ||||||||||| | |||||| ||||| |||||||| ||||||    
T  24497460 agcaggcttggtgataccctggatgttgtcacgaagaaccttcctatgcctctttgcacctccctttccgagtcccttacctccctttccacgccctgac 24497559  T
Q  563 atttt 567  Q
    |||||    
T  24497560 atttt 24497564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 1e-49; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 272 - 564
Target Start/End: Complemental strand, 41027744 - 41027452
Alignment:
Q  272 agagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaacagcatcacgaatcacat 371  Q
    ||||||||||| || ||||| |  ||||| ||||||||||| || |||||||| || |||||||| ||||| ||||||||||||||||||||||| ||||    
T  41027744 agagtccttccttgtctcttcaatgcataaacaacatccatagcagtaacagtctttctcctagcgtgctctgtgtaagtaacagcatcacgaataacat 41027645  T
Q  372 tctcaagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctaattctcttcacaccaccacgccttgcaagacgacgaatcgcaggctt 471  Q
    |||| | ||||||||| |  || || || |||||||||||||| | |||||| || | |||||| || || |  | ||| | ||||||||||||||||||    
T  41027644 tctccaaaaagatcttcaacacgccacgtgtctcttcgtagatcaaaccgcttatacgcttcactcctcctctacgtgccaaacgacgaatcgcaggctt 41027545  T
Q  472 ggttatgccttggatgttatcgcgaagaacctttctgtgcctctttgctcctccctttcccaatccctttcctccttttccacgacctgacat 564  Q
     || || ||||| |||||||| ||||| ||||| | ||| |  ||||||||||||||||||||||||||||| ||||||||||| || |||||    
T  41027544 cgtaattccttgaatgttatcacgaagcaccttacggtgtcgttttgctcctccctttcccaatccctttccaccttttccacgtccagacat 41027452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 255 - 567
Target Start/End: Original strand, 14261025 - 14261337
Alignment:
Q  255 aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac 354  Q
    |||| |||||||| || | ||||||||| || ||||| |  ||||| ||||||||||| || ||||| || |||||||| ||||| ||||| || |||||    
T  14261025 aacctccgaaaccatacaaagtccttccttgtctcttcaacgcataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagtatacgtaac 14261124  T
Q  355 agcatcacgaatcacattctc-aagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctaattctcttcacaccaccacgccttgcaag 453  Q
    |||||| |  ||||||||||| |||||| ||||| |  ||||||||||| ||||| || || |  ||||| |||||||||||||| || |  || || |     
T  14261125 agcatctcttatcacattctccaagaaa-atcttcaacacaccgcgagtttcttcataaatcaacccgctgattctcttcacacctcctcttctcgctaa 14261223  T
Q  454 acgacgaatcgcaggcttggttatgccttggatgttatcgcgaagaacctttctgtgcctctttgctcctccctttcccaatccctttcctccttttcca 553  Q
     || |||||||| ||||| || || ||||||||||| || ||||| || || |  || |||||||| ||||||||||| |||||||| ||||| ||||||    
T  14261224 tcgccgaatcgctggctttgtgattccttggatgttgtcacgaagcactttgcgatgtctctttgcacctccctttcctaatcccttacctccctttcca 14261323  T
Q  554 cgacctgacatttt 567  Q
    ||||||||||||||    
T  14261324 cgacctgacatttt 14261337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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