View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10112_low_10 (Length: 340)
Name: NF10112_low_10
Description: NF10112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10112_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 337
Target Start/End: Original strand, 21622753 - 21623072
Alignment:
| Q |
18 |
cgacgaaggagtgagaaatgctttgagttgtcttgaactaagctataaatatttacaaaacaaggaagcagagttgctctttttgttgtgttctatattt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21622753 |
cgacgaaggagtgagaaatgctttgagttgtcttgaactaagctataaatatttacaaaacaaggaagcagagttgctctttttgttgtgttctatattt |
21622852 |
T |
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| Q |
118 |
ccagaagattgcaacatatcgaccgatgatttaatcctatatgcaataggactaggttggaggaagatctccactgaagttatcaaggagtttggttcaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21622853 |
ccagaagattgcaacatatcgaccgatgatttaatcctatatgcaataggactaggttggaggaagatctccactgaagttatcaaggagtttggttcaa |
21622952 |
T |
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| Q |
218 |
gacggcataaacaagcttttagaatcatgtttgctgatgccggctaaagacatgcaacgtgtgaagatgcaagacatggatatataaaatgctttcatat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
21622953 |
gacggcataaacaagcttttagaatcatgtttgctgatgccggctaaagacatgcaacgtgtgaagatgcaagacatggatatataaaatactttcatat |
21623052 |
T |
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| Q |
318 |
atcttttcggatcctatgct |
337 |
Q |
| |
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|||||||||||||||||||| |
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| T |
21623053 |
atcttttcggatcctatgct |
21623072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 337
Target Start/End: Original strand, 21644467 - 21644786
Alignment:
| Q |
18 |
cgacgaaggagtgagaaatgctttgagttgtcttgaactaagctataaatatttacaaaacaaggaagcagagttgctctttttgttgtgttctatattt |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21644467 |
cgacgaaggagtgagaaatgctttgagttgtcttgaactaagctataaatatttacaaaacaaggaagcagagttgctctttttgttgtgttctatattt |
21644566 |
T |
|
| Q |
118 |
ccagaagattgcaacatatcgaccgatgatttaatcctatatgcaataggactaggttggaggaagatctccactgaagttatcaaggagtttggttcaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21644567 |
ccagaagattgcaacatatcgaccgatgatttaatcctatatgcaataggactaggttggaggaagatctccactgaagttatcaaggagtttggttcaa |
21644666 |
T |
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| Q |
218 |
gacggcataaacaagcttttagaatcatgtttgctgatgccggctaaagacatgcaacgtgtgaagatgcaagacatggatatataaaatgctttcatat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
21644667 |
gacggcataaacaagcttttagaatcatgtttgctgatgccggctaaagacatgcaacgtgtgaagatgcaagacatggatatataaaatactttcatat |
21644766 |
T |
|
| Q |
318 |
atcttttcggatcctatgct |
337 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
21644767 |
atcttttcggatcctatgct |
21644786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 22 - 288
Target Start/End: Complemental strand, 21715258 - 21714990
Alignment:
| Q |
22 |
gaaggagtgagaaatgctttgagttgtcttgaactaagctataaatatttacaaaacaaggaagcagagttgctctttttgttgtgttctatatttccag |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
21715258 |
gaaggagtgagaaatgctttgagttgtcttgaactaagctataaatatttacaaaacaaggaagcagagttgctctttttgttgtgttctatgtttccag |
21715159 |
T |
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| Q |
122 |
aagattgcaacatatcgaccgatgatttaatcctatatgcaataggactag--gttggaggaagatctccactgaagttatcaaggagtttggttcaaga |
219 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21715158 |
aagattgcaacatatcaatcgatgatttaatcctatatgcaataggactaggtgtgggaggaagatctccactgaagttatcaaggagtttggttcaagt |
21715059 |
T |
|
| Q |
220 |
cggcataaacaagcttttagaatcatgtttgctgatgccggctaaagacatgcaacgtgtgaagatgca |
288 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
21715058 |
cggcataaacaagcttttagaatcatgtttgctgatgccggctaaagacatgcaatgcgtgaagatgca |
21714990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 22 - 288
Target Start/End: Original strand, 21704258 - 21704526
Alignment:
| Q |
22 |
gaaggagtgagaaatgctttgagttgtcttgaactaagctataaatatttacaaaacaaggaagcagagttgctctttttgttgtgttctatatttccag |
121 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
21704258 |
gaaggagtgagagatgctttaagttgtcttgaactaagctatacatatttacaaaacaaggaagcagagttgctctttttgatgtgttctatgtttccag |
21704357 |
T |
|
| Q |
122 |
aagattgcaacatatcgaccgatgatttaatcctatatgcaataggactag--gttggaggaagatctccactgaagttatcaaggagtttggttcaaga |
219 |
Q |
| |
|
|||||| ||||||||| | || ||||||||| |||||||||| ||||| | || ||||||||| |||||||||| ||||||||| |||| |||||| |
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| T |
21704358 |
aagattacaacatatcaatagaagatttaatcatatatgcaattggactgggtgtgggaggaagacatccactgaagatatcaaggattttgattcaagt |
21704457 |
T |
|
| Q |
220 |
cggcataaacaagcttttagaatcatgtttgctgatgccggctaaagacatgcaacgtgtgaagatgca |
288 |
Q |
| |
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| |||| |||| ||| ||||||| |||||||||||||| ||| |||||||| || ||||||||||||| |
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| T |
21704458 |
tgccatagacaaacttgtagaatcttgtttgctgatgcctgctgaagacatggaatgtgtgaagatgca |
21704526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 22 - 164
Target Start/End: Original strand, 21596774 - 21596916
Alignment:
| Q |
22 |
gaaggagtgagaaatgctttgagttgtcttgaactaagctataaatatttacaaaacaaggaagcagagttgctctttttgttgtgttctatatttccag |
121 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
21596774 |
gaaggagtgagaaatgctttgagttgtcttgaactaagctataaatatttacaaaacaaggaagcagagttgctctttttgttgtgttctatgtttccag |
21596873 |
T |
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| Q |
122 |
aagattgcaacatatcgaccgatgatttaatcctatatgcaat |
164 |
Q |
| |
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|||||||||||||||||||||| ||||||||| ||||| |||| |
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| T |
21596874 |
aagattgcaacatatcgaccgacgatttaatcatatatccaat |
21596916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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