View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10112_low_11 (Length: 337)
Name: NF10112_low_11
Description: NF10112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10112_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 32 - 289
Target Start/End: Complemental strand, 45140916 - 45140661
Alignment:
| Q |
32 |
aaattgaaattgtgtagggagaagaatgattatatgataaattaatgaaagacggaagtgatgaatggaattcaagaccttacttgttcatatgatgatg |
131 |
Q |
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| T |
45140916 |
aaattgaaattgtgtagggagaagaatgattatatgataaattaatgaaagacggaagtgatgaatggaattcaagaccttacttgttcatatgatgatg |
45140817 |
T |
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| Q |
132 |
gatcagaatggtcaccgaaagaaagaaaccaaaagaaaattattgaaaagttgcgatttacataagataaataaataaattttgtaacctgtgtcaatag |
231 |
Q |
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| T |
45140816 |
gatcagaatggtcaccg-aagaaagaaaccaaaagaaaattattgaaaagttgcgatttacataagataaataaataaattttgtaacttgtgtcaatag |
45140718 |
T |
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| Q |
232 |
atatcttattaaaagttaaagaagacttatctttaactccgtcctagatgacttatta |
289 |
Q |
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| T |
45140717 |
atatcttattaaaagtt-aagaatacttctctttagctccgtcctagataatttatta |
45140661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 250
Target Start/End: Complemental strand, 45139639 - 45139610
Alignment:
| Q |
221 |
tgtgtcaatagatatcttattaaaagttaa |
250 |
Q |
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| T |
45139639 |
tgtgtcaatagatatcttattaaaagttaa |
45139610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 284 - 321
Target Start/End: Original strand, 1553491 - 1553528
Alignment:
| Q |
284 |
ttattactccctccgttcctttttaatcgtcttttttg |
321 |
Q |
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| T |
1553491 |
ttattactccctccgttcctttttaatcgtctcttttg |
1553528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 321
Target Start/End: Original strand, 22050029 - 22050062
Alignment:
| Q |
288 |
tactccctccgttcctttttaatcgtcttttttg |
321 |
Q |
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| T |
22050029 |
tactccctccgttcctttttaatcgtctcttttg |
22050062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 314
Target Start/End: Original strand, 42133018 - 42133046
Alignment:
| Q |
286 |
attactccctccgttcctttttaatcgtc |
314 |
Q |
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| T |
42133018 |
attactccctccgttcctttttaatcgtc |
42133046 |
T |
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