View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10112_low_12 (Length: 323)
Name: NF10112_low_12
Description: NF10112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10112_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 4233842 - 4233610
Alignment:
| Q |
1 |
tgaataaaaccatggattagtacgtacctgattttttacttcaatattatggccgcatgaggggcattctatggtttgattttgatcaatttcttcattg |
100 |
Q |
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| T |
4233842 |
tgaataaaaccatggattagtacgtacctgattttttacttcaatattatggccgcatgaggggcattctatggtttgattttgatcaatttcttcattg |
4233743 |
T |
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| Q |
101 |
agctttatgttatcagtgacatcagagttgttgttatctttatcattgcaccatgccatatttcttaatctcttctacaatactggtccctaataataaa |
200 |
Q |
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| T |
4233742 |
agctttatgttatcagtgacatcagagttgttgttatctttatcattgcaccatgccatatttcttaatctcttctacaatactggtccctaataataaa |
4233643 |
T |
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| Q |
201 |
gcaaattatggaaaaggggtgagaaattaaata |
233 |
Q |
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| T |
4233642 |
gcaaattatggaaaaggggtgagaaattaaata |
4233610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 238 - 318
Target Start/End: Complemental strand, 4233570 - 4233486
Alignment:
| Q |
238 |
agtttgtatctttcgggacacgttactataggatatttatata----attatatacctgtgtaccacacttttccttcttctgtg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
4233570 |
agtttgtatctttcgggacacgttactataggatatttatataattaattatacacctgtgtaccacacttttccttcttctgtg |
4233486 |
T |
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