View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10112_low_13 (Length: 298)
Name: NF10112_low_13
Description: NF10112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10112_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 21644205 - 21643923
Alignment:
| Q |
1 |
acttgctgattacgagtggttacaagaatatttcataaatcatctactataacaagaattcgtttattttctgtcaaactcaaccacaaccgttgtgctc |
100 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21644205 |
acttgctgattacgagtggttacaaggatattccataaatcatctactataacaagaattcgtttattttctgtcaaactcaaccacaaccgttgtgctc |
21644106 |
T |
|
| Q |
101 |
ttccctcttcgctttcttcattgagtttcaagtttaacatgtctgccatttttccatgaatgtctctaatattttgagtttgagacgctgtgatagatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21644105 |
ttccctcttcgctttcttcattgagtttcaagtttaacatgtctgccatttttccatgaatgtctctaatattttgagtttgagacgctgtgatagatat |
21644006 |
T |
|
| Q |
201 |
taccttgtcgaacatatttgattcctaggccttctcaccacatccacccattccatacacacctatcatataggaacatttat |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21644005 |
taccttgtcgaacatatttgattcctaggccttctcaccacatccacccattccatacacacctatcatataggaacatttat |
21643923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 21622491 - 21622209
Alignment:
| Q |
1 |
acttgctgattacgagtggttacaagaatatttcataaatcatctactataacaagaattcgtttattttctgtcaaactcaaccacaaccgttgtgctc |
100 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
21622491 |
acttgctgattacgagtggttacaaggatattccataaatcatctactataacaagaattcgtttattttctgtcaaactcaaccataaccgttgtgctc |
21622392 |
T |
|
| Q |
101 |
ttccctcttcgctttcttcattgagtttcaagtttaacatgtctgccatttttccatgaatgtctctaatattttgagtttgagacgctgtgatagatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
21622391 |
ttccctcttcgctttcttcattgagtttcaagtttaacatgtctaccatttttccatgaatatctctaatattttgagtttgagacgctgtgatagatat |
21622292 |
T |
|
| Q |
201 |
taccttgtcgaacatatttgattcctaggccttctcaccacatccacccattccatacacacctatcatataggaacatttat |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21622291 |
taccttgtcgaacatatttgattcctaggccttctcaccacatccacccattccatacacacctatcatataggaacatttat |
21622209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 34 - 235
Target Start/End: Original strand, 21715617 - 21715818
Alignment:
| Q |
34 |
cataaatcatctactataacaagaattcgtttattttctgtcaaactcaaccacaaccgttgtgctcttccctcttcgctttcttcattgagtttcaagt |
133 |
Q |
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||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
21715617 |
cataaatcatcaattataacaagaattcgtttattttctttcaaactcaaccacaaccgttgtgctcttccctcttcgctttcttccttgagtttcaagt |
21715716 |
T |
|
| Q |
134 |
ttaacatgtctgccatttttccatgaatgtctctaatattttgagtttgagacgctgtgatagatattaccttgtcgaacatatttgattcctaggcctt |
233 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
21715717 |
ttaacatgtctgccatttttccttgaatgtctctaatattttgagtttgagacactgtgatagatattaccttatcgaacatatttgattcctgagcctt |
21715816 |
T |
|
| Q |
234 |
ct |
235 |
Q |
| |
|
|| |
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| T |
21715817 |
ct |
21715818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 37 - 240
Target Start/End: Complemental strand, 21703896 - 21703692
Alignment:
| Q |
37 |
aaatcatctactataacaagaattcgtttatttt-ctgtcaaactcaaccacaaccgttgtgctcttccctcttcgctttcttcattgagtttcaagttt |
135 |
Q |
| |
|
||||| |||||||| |||||||||||||| |||| || ||| |||||||||||| |||||||||||| | ||||| ||||||| |||||||||||||| |
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| T |
21703896 |
aaatcgtctactatgacaagaattcgtttttttttctttcagactcaaccacaaacgttgtgctctttcgtcttcatcttcttcactgagtttcaagttt |
21703797 |
T |
|
| Q |
136 |
aacatgtctgccatttttccatgaatgtctctaatattttgagtttgagacgctgtgatagatattaccttgtcgaacatatttgattcctaggccttct |
235 |
Q |
| |
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|||| ||||||||||||| ||||| | ||||| ||| ||||||||||| ||||||| | || ||||| ||||||||||||||||||| ||||||| |
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| T |
21703796 |
aacaaagctgccatttttccttgaatttttctaacgtttggagtttgagacactgtgattaagataaccttatcgaacatatttgattcctcagccttct |
21703697 |
T |
|
| Q |
236 |
cacca |
240 |
Q |
| |
|
|||| |
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|
| T |
21703696 |
tacca |
21703692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 235
Target Start/End: Complemental strand, 21115326 - 21115145
Alignment:
| Q |
54 |
aagaattcgtttattttctgtcaaactcaaccacaaccgttgtgctcttccctcttcgctttcttcattgagtttcaagtttaacatgtctgccattttt |
153 |
Q |
| |
|
||||||||| || |||| | | |||| |||||| || |||||||||||||||||||| |||||||| | | ||||||||||||||| ||||| | |||| |
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| T |
21115326 |
aagaattcgcttcttttgttttaaacacaaccataaacgttgtgctcttccctcttcactttcttcctccaatttcaagtttaacatatctgcaagtttt |
21115227 |
T |
|
| Q |
154 |
ccatgaatgtctctaatattttgagtttgagacgctgtgatagatattaccttgtcgaacatatttgattcctaggccttct |
235 |
Q |
| |
|
|| |||||| ||||||||||| ||||||||| | ||||| ||||| ||||| || ||||||| | |||||| ||||||| |
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| T |
21115226 |
ccctgaatgcctctaatatttggagtttgagcgacagtgattgatataaccttatcaaacatatctaattcctcagccttct |
21115145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 273
Target Start/End: Original strand, 21715848 - 21715883
Alignment:
| Q |
238 |
ccacatccacccattccatacacacctatcatatag |
273 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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|
| T |
21715848 |
ccacatccacccattccatacacacctatcatatag |
21715883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 271
Target Start/End: Complemental strand, 21703667 - 21703634
Alignment:
| Q |
238 |
ccacatccacccattccatacacacctatcatat |
271 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
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| T |
21703667 |
ccacatccacccattccatacactcctatcatat |
21703634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 191
Target Start/End: Original strand, 23010519 - 23010676
Alignment:
| Q |
34 |
cataaatcatctactataacaagaattcgtttattttctgtcaaactcaaccacaaccgttgtgctcttccctcttcgctttcttcattgagtttcaagt |
133 |
Q |
| |
|
||||||||||||||||| || ||||| || || |||||| |||||||||||||||| ||||||||||||||||| || |||||||| | | ||||| || |
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| T |
23010519 |
cataaatcatctactattacgagaatccgcttcttttctttcaaactcaaccacaaacgttgtgctcttccctcatcactttcttcctccaatttcatgt |
23010618 |
T |
|
| Q |
134 |
ttaacatgtctgccatttttccatgaatgtctctaatattttgagtttgagacgctgt |
191 |
Q |
| |
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| || | || || |||||||| ||||| ||||||||||| ||||||||||| |||| |
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|
| T |
23010619 |
tcaaaacatcagctatttttccttgaatatctctaatattgggagtttgagacactgt |
23010676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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