View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10112_low_14 (Length: 292)
Name: NF10112_low_14
Description: NF10112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10112_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 8e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 15 - 203
Target Start/End: Complemental strand, 40017285 - 40017097
Alignment:
| Q |
15 |
gattagcaagtctaacaaaggattatctctaatcgttgaaattagtacagaaaacgaaaactaataataattagacctaatttagcataattaccaattt |
114 |
Q |
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| T |
40017285 |
gattagcaagtctaccaaaggattatctctaatcgttgaaattagtacagaaaacgaaaactaataataattagacctaatttagcataattaccaattt |
40017186 |
T |
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| Q |
115 |
ctaacataaaattagcaaaattaagatctaaaacacaataaaagcaaataaaacagatcagaacaacaattgatgaatccaacattaac |
203 |
Q |
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| T |
40017185 |
ctaacataaaattagcaaaattaagatctaaaacacaataaaagcaaataaaacagatcagaacaacaattgatgaatcgaacattaac |
40017097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 228 - 274
Target Start/End: Complemental strand, 40017072 - 40017026
Alignment:
| Q |
228 |
caggagaatcgaaacataccaaggtgcgtagaattcaacgacgatga |
274 |
Q |
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| T |
40017072 |
caggagaatcgaaacataccaaggtgcgtagaattcaacgacgatga |
40017026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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