View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10112_low_16 (Length: 282)
Name: NF10112_low_16
Description: NF10112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10112_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 49537422 - 49537156
Alignment:
| Q |
1 |
ttgtctaaaatttgcaacaaaattagtgactgtgcgagcgtgtattccaattgatttagctgcagcagaatcagaccccacatttccatatccgaccggc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49537422 |
ttgtctaaaatttgcaacaaaattagtgactgtgcg----tgtattccaattgatttagctgcagcagaatcagaccccacatttccatatccgaccggc |
49537327 |
T |
|
| Q |
101 |
ttaattagcatcattcacatgtcacattgaacaagacatgtaccagtcacaacattataatatactactattagtatatattttttataccaagcgtatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49537326 |
ttaattagcatcattcacatgtcacattgaacaagacatgtaccagtcacaacattataatatactactattagtatatattttttataccaagcgtatt |
49537227 |
T |
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| Q |
201 |
gcgtgtaattaaggagattaatctatcgataattgaaatttaagatgttgacatctcctaacatatttctt |
271 |
Q |
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||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49537226 |
gcgtgtaattagggagattaatttatcgataattgaaatttaagatgttgacatctcctaacatatttctt |
49537156 |
T |
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