View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10112_low_2 (Length: 512)
Name: NF10112_low_2
Description: NF10112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10112_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 18 - 496
Target Start/End: Original strand, 49446472 - 49446951
Alignment:
| Q |
18 |
agttgatagcgagaactgagcaccatagatgtatccacctctttgcaaggacactagtggcaacagcttgtttggtagggagaaaagagagaatatgaca |
117 |
Q |
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| T |
49446472 |
agttgatagcgagaactgagcaccatagatgtatccacctctttgcaaggacactagtggcaacagcttgtttggtagggagaaaagagagaatatgaca |
49446571 |
T |
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| Q |
118 |
gatgagagtctccggtaaattgctgatcctatcatcgtcgtctttatccggaattgatgacatttctgatgtaagaaaacttgaattttctgcagaatgc |
217 |
Q |
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| T |
49446572 |
gatgagagtctccggtaaattgctgatcctatcatcgtcgtcgttatccgcaattgatgacatttctgatgtaagaaaacttgaattttctgcagaatgc |
49446671 |
T |
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| Q |
218 |
aaacaaccaaaatgttatgtttcagcacataacaactaatacagaaaatttgtgatggcagattttgaacagaagtaaaagcagattagatatttatcat |
317 |
Q |
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| T |
49446672 |
aaacaaccaaaatgttatgtttcagcacataacaactaatacagaaaatttgtgatggaagattttgcacagaagtaaaagcagattagatatttatcat |
49446771 |
T |
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| Q |
318 |
tccaaaaaatgaatagtaaatctaataactaacaggtaacatttgtcactnnnnnnnnnnnttaatctaactggtttgagctaagttagaggtctttgat |
417 |
Q |
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| T |
49446772 |
tccaaaaaatgaatagtaaatctaacaactaactggtaacatttgtcactaaaaaaaaaaaataatctaactggattgagctaagttagaggtctttgat |
49446871 |
T |
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| Q |
418 |
ccaaactcatac-aaaagagaaaatattaatcttaaccactaacattttccattaataataattaaacatgaatgttgtt |
496 |
Q |
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| T |
49446872 |
ccaaactcatacaaaaagagaaaatattaatcttaaccactaacattttccattaataataattaaacatgaatgttgtt |
49446951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 49438984 - 49439080
Alignment:
| Q |
18 |
agttgatagcgagaactgagcaccatagatgtatccacctctttgcaaggacactagtggcaacagcttgtttggtagggagaaaagagagaatatg |
114 |
Q |
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| T |
49438984 |
agttgatatcgaaaactgagcgccattgatgcttccatctcttggataggacgctagtggcaacaacctgtttggttgggagaaaagagagaatatg |
49439080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 122
Target Start/End: Original strand, 49427606 - 49427677
Alignment:
| Q |
51 |
tccacctctttgcaaggacactagtggcaacagcttgtttggtagggagaaaagagagaatatgacagatga |
122 |
Q |
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| T |
49427606 |
tccatctcttcgaaaggacactagtggcaaccgcctgttcggttgggagaaaagagataatatgacagatga |
49427677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 120
Target Start/End: Complemental strand, 12539910 - 12539864
Alignment:
| Q |
74 |
gtggcaacagcttgtttggtagggagaaaagagagaatatgacagat |
120 |
Q |
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| T |
12539910 |
gtggcagcagattgtttggtagggagaaaagagagaatgtggcagat |
12539864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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