View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10112_low_21 (Length: 250)
Name: NF10112_low_21
Description: NF10112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10112_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 75 - 244
Target Start/End: Original strand, 32532827 - 32532996
Alignment:
| Q |
75 |
aattgtaatctttatttgtttttggttagattttggtcattataatctgactcataatacaataattataatctgaagataataatattaacaataaaaa |
174 |
Q |
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| T |
32532827 |
aattgtaatctttatttgtttttggttagattttggtcattataatctgactcataatacaataattataatctgaagataataatattaacaataaaaa |
32532926 |
T |
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| Q |
175 |
atttggagtgtatattgatagaaaacaaaagttacccataacatatgatgagttaattacttcatctcac |
244 |
Q |
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| T |
32532927 |
atttggagtgtatattgatagaaaacaaaagttacccataacatatgatgagttaattacttcatgtcac |
32532996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 32532789 - 32532833
Alignment:
| Q |
1 |
tgtaaaatctctttcatttatttaagattcttttgtacaattgta |
45 |
Q |
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| T |
32532789 |
tgtaaaatctctttcatttatttaagattcttttgtacaattgta |
32532833 |
T |
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