View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10112_low_26 (Length: 238)

Name: NF10112_low_26
Description: NF10112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10112_low_26
NF10112_low_26
[»] chr3 (1 HSPs)
chr3 (1-223)||(32532403-32532625)


Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 32532625 - 32532403
Alignment:
1 ctatagtaagtaataatctgccaaactgaacctctgctacactctagctccctatactccctctttcagctattcaactagcaataatagttatatttgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
32532625 ctatagtaagtaataatctgccaaactgaacctctgctacactctagctccctacactccctctttcagctattcaactagcaataatagttacatttgt 32532526  T
101 ggttgcataaataaggcacaaggagttgtgaaaatgccaagttcagcttcatttttgaggcagttaagtgcaaaggagacttggaaatcaacatcaaata 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
32532525 ggttgcataaataaggcaaaaggagttgtgaaaatgccaagttcagcttcatttttgaggcagttaagtgcaaaggagacttggaaatcaacatcaaata 32532426  T
201 ggtggagtggaaaaaacacatac 223  Q
    |||||||||||||||||||||||    
32532425 ggtggagtggaaaaaacacatac 32532403  T

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