View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10112_low_27 (Length: 227)
Name: NF10112_low_27
Description: NF10112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10112_low_27 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 21432923 - 21432697
Alignment:
| Q |
1 |
atgcatcaagtaaaacttctataaaatggtgcattggttggcacataccttctagagaatctgtacaggtttttaaatgcatttcttctgggctcaaacg |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21432923 |
atgcattaagtaaaacttctataaaatggtgcattggttggcacataccttctagagaatctgtacaggtttttaaatgcatttcttctgggctcaaacg |
21432824 |
T |
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| Q |
101 |
atgaagagaagtggtatttagcagtgtgtgatctaagtccagaaccaagcaaagctttctacagtttaataaattccgtgtgtgtaagctgcgcactcta |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
21432823 |
atgaagggaagtggtatttagcagtgtgtgatctaagtccagaaccaagcaaagctttctacggtttaataaattccgtgtgtgtaagcttcgcactcta |
21432724 |
T |
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| Q |
201 |
gaaatttcctcctcctgaagtcttagt |
227 |
Q |
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|||||||||||||| |||||||||||| |
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| T |
21432723 |
gaaatttcctcctcatgaagtcttagt |
21432697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 24 - 227
Target Start/End: Original strand, 27099529 - 27099732
Alignment:
| Q |
24 |
aaatggtgcattggttggcacataccttctagagaatctgtacaggtttttaaatgcatttcttctgggctcaaacgatgaagagaagtggtatttagca |
123 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| ||||||| || |||||||||| |||| ||||| ||||||| ||||||||||||| | |
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| T |
27099529 |
aaatggtgcattagttggcacataccttctagagaatctgtataggttttcaattgcatttcttttgggttcaaaggatgaagggaagtggtatttatct |
27099628 |
T |
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| Q |
124 |
gtgtgtgatctaagtccagaaccaagcaaagctttctacagtttaataaattccgtgtgtgtaagctgcgcactctagaaatttcctcctcctgaagtct |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
27099629 |
gtgtgtgatctaagtccagaaccaagcaaagctttctacggtttaataaattccgtgtgtgtaagctgcgcactctagaaatttcctcatcatgaagtct |
27099728 |
T |
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| Q |
224 |
tagt |
227 |
Q |
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|||| |
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| T |
27099729 |
tagt |
27099732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 27151736 - 27151507
Alignment:
| Q |
1 |
atgcatcaagtaaaacttctataaaatggtgcattggttggcacataccttctagagaatctgtacaggtttttaaatgcatttcttct-gggctcaaac |
99 |
Q |
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|||||||||||||||||| |||||||||||||||| | ||||| |||| |||||||||||||||| || |||||||||||||||||||| ||||||||| |
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| T |
27151736 |
atgcatcaagtaaaacttttataaaatggtgcattcggtggcatatactttctagagaatctgtatagatttttaaatgcatttcttctggggctcaaat |
27151637 |
T |
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| Q |
100 |
gatgaagagaagtggtatttagcagtgtgtgatctaagtccag---aaccaagcaaagctttctacagtttaataaattccgtgtgtgtaagctgcgcac |
196 |
Q |
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||||||| | |||||||||||||||||||||||||| | |||| ||||||||||||||||||| |||| |||||||| |||||| |||||||| ||| |
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| T |
27151636 |
gatgaaggggagtggtatttagcagtgtgtgatctaggcccagaataaccaagcaaagctttctatggttt-ataaattctgtgtgtctaagctgcacac |
27151538 |
T |
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| Q |
197 |
tctagaaatttcctcctcctgaagtcttagt |
227 |
Q |
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|||| |||||||||| || |||||||||||| |
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| T |
27151537 |
tctacaaatttcctcatcgtgaagtcttagt |
27151507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 28 - 210
Target Start/End: Complemental strand, 26988829 - 26988646
Alignment:
| Q |
28 |
ggtgcattggttggcacat-accttctagagaatctgtacaggtttttaaatgcatttcttctgggctcaaacgatgaagagaagtggtatttagcagtg |
126 |
Q |
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||||||| |||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26988829 |
ggtgcatcggttggcatattaccttctagagaatctgtatgggtttttaaatgcatttcttctgggctcaaacgatgaagggaagtggtatttagcagtg |
26988730 |
T |
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| Q |
127 |
tgtgatctaagtccagaaccaagcaaagctttctacagtttaataaattccgtgtgtgtaagctgcgcactctagaaatttcct |
210 |
Q |
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||||||||||||| |||||||||||||||||||||| |||||||||||| || | ||||||||||||||||||||||| |
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| T |
26988729 |
tgtgatctaagtctagaaccaagcaaagctttctacgatttaataaattcttcacgtctctgctgcgcactctagaaatttcct |
26988646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 46 - 210
Target Start/End: Original strand, 27076449 - 27076613
Alignment:
| Q |
46 |
taccttctagagaatctgtacaggtttttaaatgcatttcttctgggctcaaacgatgaagagaagtggtatttagcagtgtgtgatctaagtccagaac |
145 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||| |
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| T |
27076449 |
taccttctagagaatctgtatgagtttttaaatgcatttcttctgggctcaaacgatgaagggaagtggtatttagcagtgtgtgatctaggtctagaac |
27076548 |
T |
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| Q |
146 |
caagcaaagctttctacagtttaataaattccgtgtgtgtaagctgcgcactctagaaatttcct |
210 |
Q |
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||| ||||||||||||| |||||||||||| || || || |||||||||||||||||||| |
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| T |
27076549 |
caaacaaagctttctacgatttaataaattcttcacgtctatgccgcgcactctagaaatttcct |
27076613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 46 - 176
Target Start/End: Complemental strand, 27028128 - 27027998
Alignment:
| Q |
46 |
taccttctagagaatctgtacaggtttttaaatgcatttcttctgggctcaaacgatgaagagaagtggtatttagcagtgtgtgatctaagtccagaac |
145 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| ||||||||| | |||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
27028128 |
taccttctagagaatctgtatgggtttttaaatgcatttcttctgagctcaaacggtaaagaaaagtggtatttagcagtgtgtgatctaggtccagaac |
27028029 |
T |
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| Q |
146 |
caagcaaagctttctacagtttaataaattc |
176 |
Q |
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||| ||||||||||||| |||||||||||| |
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| T |
27028028 |
caaacaaagctttctacgatttaataaattc |
27027998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 28 - 210
Target Start/End: Complemental strand, 34690905 - 34690722
Alignment:
| Q |
28 |
ggtgcattggttggcacat-accttctagagaatctgtacaggtttttaaatgcatttcttctgggctcaaacgatgaagagaagtggtatttagcagtg |
126 |
Q |
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||||||| |||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34690905 |
ggtgcatcggttggcatattaccttctagagaatctgtatgggtttttaaatgcatttcttctgggctcaaacgatgaagggaagtggtatttagcagtg |
34690806 |
T |
|
| Q |
127 |
tgtgatctaagtccagaaccaagcaaagctttctacagtttaataaattccgtgtgtgtaagctgcgcactctagaaatttcct |
210 |
Q |
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||||||||||||| |||||||||||||||||||||| |||||||||||| || | ||||||||||||||||||||||| |
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| T |
34690805 |
tgtgatctaagtcaagaaccaagcaaagctttctacgatttaataaattcttcacgtctctgctgcgcactctagaaatttcct |
34690722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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