View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10112_low_28 (Length: 227)

Name: NF10112_low_28
Description: NF10112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10112_low_28
NF10112_low_28
[»] chr6 (12 HSPs)
chr6 (1-227)||(2952324-2952550)
chr6 (1-217)||(2937861-2938074)
chr6 (1-219)||(2934998-2935213)
chr6 (4-225)||(2996840-2997058)
chr6 (1-167)||(2929757-2929923)
chr6 (1-225)||(2927553-2927774)
chr6 (1-225)||(3003248-3003469)
chr6 (7-151)||(2983330-2983474)
chr6 (5-122)||(2974500-2974617)
chr6 (71-225)||(2964902-2965053)
chr6 (44-118)||(2979376-2979450)
chr6 (127-225)||(2658575-2658670)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-225)||(34706-34927)
[»] chr7 (1 HSPs)
chr7 (1-169)||(3339471-3339639)
[»] chr3 (2 HSPs)
chr3 (1-225)||(49618805-49619025)
chr3 (1-225)||(49613829-49614050)


Alignment Details
Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 2952550 - 2952324
Alignment:
Q  1 agtttgccaaggagttttgccataatcacgcctcagagtagccttcaacttattccaacgattattacagaaagcatttaagtctttgcatagaataaag 100  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||| |||| || |||||||  |||||||  | |||| ||    
T  2952550 agtttgccaaggagttttgccataatcacgcctcagagtggctttcaacttattccaaggattactacaaaatgcatttatttctttgccaataatagag 2952451  T
Q  101 acatgagaactgatattagaatatacaacatttttgcaaataccattaaacctgttagccacagaatcattactttctcccagcatattatccagtattt 200  Q
    |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||| |    
T  2952450 aattgagaactgatattagaatatacaacatttttgcaaataccattaaacctgttagccacagaatcactactttctccaagcatattatctagtatat 2952351  T
Q  201 ccttcccaacaagtatatccacatcgg 227  Q
    || ||| ||||||||||||||||||||    
T  2952350 ccctccgaacaagtatatccacatcgg 2952324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 2938074 - 2937861
Alignment:
Q  1 agtttgccaaggagttttgccataatcacgcctcagagtagccttcaacttattccaacgattattacagaaagcatttaagtctttgcatagaataaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| | |||||||||||||| |||||||| |||||| ||    
T  2938074 agtttgccaaggagttttgccataatcacgcctcagagtagccttcaacttatgccaaggattactgcagaaagcatttaattctttgcaaagaatagag 2937975  T
Q  101 acatgagaactgatattagaatatacaacatttttgcaaataccattaaacctgttagccacagaatcattactttctcccagcatattatccagtattt 200  Q
    |  ||||||||||||| ||||||||||||||||||||||| ||||||||||   ||||||||||||||   ||| ||||| |||  ||| ||||||||||    
T  2937974 aattgagaactgatatcagaatatacaacatttttgcaaagaccattaaacaaattagccacagaatc---actgtctccaagccaattttccagtattt 2937878  T
Q  201 ccttcccaacaagtata 217  Q
      |||| ||||||||||    
T  2937877 tgttccaaacaagtata 2937861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 2935213 - 2934998
Alignment:
Q  1 agtttgccaaggagttttgccataatcacgcctcagagtagccttcaacttattccaacgattattacagaaagcatttaagtctttgcatagaataaag 100  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||| |||| ||||| ||||||||||||||||||||||||||| ||    
T  2935213 agtttgccaaggagttttgcaataatcacgcctgagagtagccttcaacttatgccaaggattcttacaaaaagcatttaagtctttgcatagaatagag 2935114  T
Q  101 acatgagaactgatattagaatatacaacatttttgcaaataccattaaacctgttagccacagaatcattactttctcccagcatattatccagtattt 200  Q
    | |||||||||||||||||| | |  ||||||||| |||| ||||||||||  |||||||||||||||   ||| ||  | |||||||||| ||||||||    
T  2935113 aaatgagaactgatattagattgtgtaacatttttccaaagaccattaaacaagttagccacagaatc---actatccgcaagcatattatgcagtattt 2935017  T
Q  201 ccttcccaacaagtatatc 219  Q
    | |||| ||||||||||||    
T  2935016 cgttccgaacaagtatatc 2934998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 4 - 225
Target Start/End: Original strand, 2996840 - 2997058
Alignment:
Q  4 ttgccaaggagttttgccataatcacgcctcagagtagccttcaacttattccaacgattattacagaaagcatttaagtctttgcatagaataaagaca 103  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||| |||| ||||  |||| |||||||||||||| ||||| |||||| |||      
T  2996840 ttgccaaggagtcttgccataatcacgcctgagagtagccttcaacttatgccaaggattcctacaaaaagcatttaagtccttgcaaagaatagagaat 2996939  T
Q  104 tgagaactgatattagaatatacaacatttttgcaaataccattaaacctgttagccacagaatcattactttctcccagcatattatccagtatttcct 203  Q
    |||||||||||||| | || |||||||||| |||||| ||||||||||  |||||||||||||||   ||| ||||| |||  ||| ||||||||||| |    
T  2996940 tgagaactgatattggtatgtacaacatttatgcaaagaccattaaacaagttagccacagaatc---actgtctccaagccaattttccagtatttctt 2997036  T
Q  204 tcccaacaagtatatccacatc 225  Q
    |   |||||||||||| |||||    
T  2997037 tgtgaacaagtatatcaacatc 2997058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 2929923 - 2929757
Alignment:
Q  1 agtttgccaaggagttttgccataatcacgcctcagagtagccttcaacttattccaacgattattacagaaagcatttaagtctttgcatagaataaag 100  Q
    |||||||||||||||  | | |||||||||||| ||||||||||||||| ||| |||| |||| | ||| ||||||||||||||||||||||||||| ||    
T  2929923 agtttgccaaggagtacttcaataatcacgcctgagagtagccttcaacctatgccaaggattctaacaaaaagcatttaagtctttgcatagaatagag 2929824  T
Q  101 acatgagaactgatattagaatatacaacatttttgcaaataccattaaacctgttagccacagaat 167  Q
    | ||||| |||||||||||||| || || || |||||||| |||||||||| |||||||||||||||    
T  2929823 aaatgaggactgatattagaatgtataatatatttgcaaaaaccattaaacatgttagccacagaat 2929757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 2927774 - 2927553
Alignment:
Q  1 agtttgccaaggagttttgccataatcacgcctcagagtagccttcaacttattccaacgattattacagaaagcatttaagtctttgcatagaataaag 100  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||||||  |   |||| |||||  ||||||||||||||||||| |||||| ||    
T  2927774 agtttgccaaggagttttgcaataatcacgcctgagagtagccttcaacttatgtcgtggattcttacaataagcatttaagtctttgcaaagaatagag 2927675  T
Q  101 acatgagaactgatattagaatatacaacatttttgcaaataccattaaacctgttagccacagaatcattactttctcccagcatattatccagtattt 200  Q
    |  |||||||||||  |||||  |  ||||||||| | || ||||||||||  ||||||||||||||||   |  ||||| |||||||| ||||||||||    
T  2927674 aattgagaactgattgtagaacgtgtaacatttttaccaagaccattaaacaagttagccacagaatca---ccgtctccaagcatattttccagtattt 2927578  T
Q  201 ccttcccaacaagtatatccacatc 225  Q
    || ||  ||||||||||||||||||    
T  2927577 ccctctgaacaagtatatccacatc 2927553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 3003248 - 3003469
Alignment:
Q  1 agtttgccaaggagttttgccataatcacgcctcagagtagccttcaacttattccaacgattattacagaaagcatttaagtctttgcatagaataaag 100  Q
    ||||||||| |||||||||| |||||||||||| ||||||||||||||||||| |||  |||| |||||  ||||||||||||||||||  |||||| ||    
T  3003248 agtttgccagggagttttgcaataatcacgcctgagagtagccttcaacttatgccatggattcttacaataagcatttaagtctttgccaagaatagag 3003347  T
Q  101 acatgagaactgatattagaatatacaacatttttgcaaataccattaaacctgttagccacagaatcattactttctcccagcatattatccagtattt 200  Q
    |  |||||||||||  |||||  || || || ||||| || ||||||||||  |||||||||||||||   ||| ||||| |||||||| ||||||||||    
T  3003348 aattgagaactgattgtagaacgtataatatctttgccaagaccattaaacaagttagccacagaatc---actgtctccaagcatattttccagtattt 3003444  T
Q  201 ccttcccaacaagtatatccacatc 225  Q
    |  ||  ||||||||||||||||||    
T  3003445 cgctctgaacaagtatatccacatc 3003469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 7 - 151
Target Start/End: Complemental strand, 2983474 - 2983330
Alignment:
Q  7 ccaaggagttttgccataatcacgcctcagagtagccttcaacttattccaacgattattacagaaagcatttaagtctttgcatagaataaagacatga 106  Q
    ||||||||| ||||||||||||||||| ||||| |||||||||||||||| | |||||||||| |||||||  || || ||| | ||| | | || ||||    
T  2983474 ccaaggagtattgccataatcacgcctgagagtggccttcaacttattcctaggattattacaaaaagcatccaattcattggaaagacttacgaaatga 2983375  T
Q  107 gaactgatattagaatatacaacatttttgcaaataccattaaac 151  Q
     ||||||  ||||| | ||||||||||||||||| ||||||||||    
T  2983374 taactgagtttagattttacaacatttttgcaaagaccattaaac 2983330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 2974617 - 2974500
Alignment:
Q  5 tgccaaggagttttgccataatcacgcctcagagtagccttcaacttattccaacgattattacagaaagcatttaagtctttgcatagaataaagacat 104  Q
    ||||||||||| |||| |||||||||||| |||| |||||||||| ||| |||| ||||  ||||  ||||||| || |||||||| |||||| ||| ||    
T  2974617 tgccaaggagtattgcaataatcacgccttagagcagccttcaacctatgccaaggattcctacaataagcattcaattctttgcaaagaatagagaaat 2974518  T
Q  105 gagaactgatattagaat 122  Q
    ||||||||||||||||||    
T  2974517 gagaactgatattagaat 2974500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 71 - 225
Target Start/End: Complemental strand, 2965053 - 2964902
Alignment:
Q  71 aaagcatttaagtctttgcatagaataaagacatgagaactgatattagaatatacaacatttttgcaaataccattaaacctgttagccacagaatcat 170  Q
    |||||||| || |||||||| |||||| |||  |||  |||||||||||||| || ||||| |||| ||| ||||||||||  |||||||||||||||      
T  2965053 aaagcattcaaatctttgcaaagaatagagaattgaagactgatattagaatgtataacatatttggaaagaccattaaacaagttagccacagaatc-- 2964956  T
Q  171 tactttctcccagcatattatccagtatttccttcccaacaagtatatccacatc 225  Q
     ||| ||||| |||||||| ||||||||||  |||  ||||||||||||||||||    
T  2964955 -actatctccaagcatattttccagtattttgttctgaacaagtatatccacatc 2964902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 118
Target Start/End: Complemental strand, 2979450 - 2979376
Alignment:
Q  44 ttcaacttattccaacgattattacagaaagcatttaagtctttgcatagaataaagacatgagaactgatatta 118  Q
    ||||||| || |||| ||||| || | ||| ||||||| |||||||| |||||| ||| ||||||||||||||||    
T  2979450 ttcaactcatgccaaggattactataaaaatcatttaaatctttgcaaagaatagagaaatgagaactgatatta 2979376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 225
Target Start/End: Original strand, 2658575 - 2658670
Alignment:
Q  127 aacatttttgcaaataccattaaacctgttagccacagaatcattactttctcccagcatattatccagtatttccttcccaacaagtatatccacatc 225  Q
    |||||||||||||| |||| |||||  ||||||||||||||||   || ||||| |||  ||| ||||||||||  ||   ||||||||||||||||||    
T  2658575 aacatttttgcaaagaccagtaaacaagttagccacagaatca---ctgtctccaagccaattttccagtattttgtttggaacaagtatatccacatc 2658670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 34706 - 34927
Alignment:
Q  1 agtttgccaaggagttttgccataatcacgcctcagagtagccttcaacttattccaacgattattacagaaagcatttaagtctttgcatagaataaag 100  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||| ||||| |||| || |||||||||| |||||| |||||| ||    
T  34706 agtttgccaaggagttttgccataatcacgcctgagagaagccttcaacctattccaaggattactacaaaatgcatttaagtttttgcaaagaatagag 34805  T
Q  101 acatgagaactgatattagaatatacaacatttttgcaaataccattaaacctgttagccacagaatcattactttctcccagcatattatccagtattt 200  Q
    | ||||||||||||||||  || || |||||||||||||| || |||||||  |||||||||||||||   ||| ||||| |||| ||||  ||||||||    
T  34806 aaatgagaactgatattatgatgtataacatttttgcaaagacgattaaacaagttagccacagaatc---actgtctccaagcaaattagtcagtattt 34902  T
Q  201 ccttcccaacaagtatatccacatc 225  Q
    | |||| ||||||||||||| ||||    
T  34903 ctttccgaacaagtatatccgcatc 34927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 3339639 - 3339471
Alignment:
Q  1 agtttgccaaggagttttgccataatcacgcctcagagtagccttcaacttattccaacgattattacagaaagcatttaagtctttgcatagaataaag 100  Q
    ||||||||||||||| |||| |||||||||||| ||||| ||||||||| ||| |||| |||| ||||| ||| |||||||||||||||  ||| ||  |    
T  3339639 agtttgccaaggagtattgcaataatcacgcctgagagtggccttcaacctatgccaaggattcttacaaaaatcatttaagtctttgccaagagtaggg 3339540  T
Q  101 acatgagaactgatattagaatatacaacatttttgcaaataccattaaacctgttagccacagaatca 169  Q
    | ||||||||| | | ||||||  | |||||||||||||| ||||||||||   |||||||||||||||    
T  3339539 aaatgagaacttacactagaatgcataacatttttgcaaagaccattaaacaatttagccacagaatca 3339471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 49619025 - 49618805
Alignment:
Q  1 agtttgccaaggagttttgccataatcacgcctcagagtagccttcaacttattccaacgattattacagaaagcatttaagtctttgcatagaataaag 100  Q
    |||||||||||||||  |||||||||||||||| |||||||||||||  |||| |||| |||||||||| ||| || | ||||||||    |||| | ||    
T  49619025 agtttgccaaggagtactgccataatcacgcctgagagtagccttcagtttatgccaaggattattacaaaaacca-tcaagtctttaggaagaagacag 49618927  T
Q  101 acatgagaactgatattagaatatacaacatttttgcaaataccattaaacctgttagccacagaatcattactttctcccagcatattatccagtattt 200  Q
    | ||||||||||| |||   || |  ||||||||| |||| ||||||| ||  ||| |||||||||||   ||| ||| | |||||||||||| |||||     
T  49618926 aaatgagaactgaaatttatatgtgaaacatttttccaaagaccattatacaagtttgccacagaatc---actgtctgcaagcatattatcctgtattc 49618830  T
Q  201 ccttcccaacaagtatatccacatc 225  Q
    |  ||  ||||||||||||| ||||    
T  49618829 ctctctgaacaagtatatccgcatc 49618805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 49614050 - 49613829
Alignment:
Q  1 agtttgccaaggagttttgccataatcacgcctcagagtagccttcaacttattccaacgattattacagaaagcatttaagtctttgcatagaataaag 100  Q
    ||||||||||||| | |||| ||||||||| || ||||| ||||||||  ||| |||| ||| || ||| ||| |||| |||||||  ||||||||| ||    
T  49614050 agtttgccaaggactgttgcaataatcacgtctgagagtcgccttcaatctatgccaaggatcatgacaaaaaccattcaagtcttcacatagaatagag 49613951  T
Q  101 acatgagaactgatattagaatatacaacatttttgcaaataccattaaacctgttagccacagaatcattactttctcccagcatattatccagtattt 200  Q
       |||||||||| ||   ||| |  ||||||||| |||| || |||||||  |||||||||||||||   ||| || || |||  |||  |||||||||    
T  49613950 tactgagaactgaaatacaaatgtgtaacatttttccaaagactattaaacaagttagccacagaatc---actatccccaagccaattcaccagtattt 49613854  T
Q  201 ccttcccaacaagtatatccacatc 225  Q
     ||||  ||||||||||||||||||    
T  49613853 tcttctgaacaagtatatccacatc 49613829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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