View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10112_low_29 (Length: 226)
Name: NF10112_low_29
Description: NF10112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10112_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 225
Target Start/End: Original strand, 18937900 - 18938118
Alignment:
| Q |
7 |
aaaataaagttaaattggtttggcataagttgtttttaaaaacctatcttgaagaatttataaaaatgagttcaaaacagcttacaaacaatgaaacaag |
106 |
Q |
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| T |
18937900 |
aaaataaagttaaattggtttggcataagttgtttttaaaaacctatcttgaagaatttataaaaatgggttcaaaacagcttacaaacaatgaaacaag |
18937999 |
T |
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| Q |
107 |
tgataagtttgttttgtaaatgctctcgaaaagtcttgtcgtgcttatgttatgttagtagataaagtaatatatgcacattcaaatagcctttataaat |
206 |
Q |
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| T |
18938000 |
tgataagtttgttttgtaaatgctctcgaaaagtcttgtggtgcttatgttatgttagtagataaagtaaaatatgcaaattcaaatagcctttactaat |
18938099 |
T |
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| Q |
207 |
ctggtatatttagactctt |
225 |
Q |
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| T |
18938100 |
ccagtatatttagactctt |
18938118 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 35394549 - 35394500
Alignment:
| Q |
50 |
ctatcttgaagaatttataaaaatgagttcaaaacagcttacaaacaatg |
99 |
Q |
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| T |
35394549 |
ctatcttgaagaatttatgaaaataagttgaaaacagcttatgaacaatg |
35394500 |
T |
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