View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10112_low_4 (Length: 440)

Name: NF10112_low_4
Description: NF10112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10112_low_4
NF10112_low_4
[»] chr8 (5 HSPs)
chr8 (11-323)||(24793356-24793668)
chr8 (12-323)||(11394569-11394881)
chr8 (21-322)||(43253949-43254251)
chr8 (396-424)||(4676129-4676157)
chr8 (51-87)||(43613523-43613559)
[»] chr5 (12 HSPs)
chr5 (11-315)||(19513696-19514001)
chr5 (21-293)||(8571545-8571817)
chr5 (11-323)||(4399481-4399794)
chr5 (31-288)||(17737781-17738038)
chr5 (21-288)||(13916889-13917155)
chr5 (11-139)||(3199516-3199663)
chr5 (325-396)||(9578247-9578318)
chr5 (21-105)||(6264639-6264723)
chr5 (21-161)||(34480571-34480711)
chr5 (21-63)||(15005787-15005829)
chr5 (21-99)||(15500093-15500171)
chr5 (12-99)||(35123153-35123241)
[»] chr7 (10 HSPs)
chr7 (11-323)||(19728091-19728404)
chr7 (24-185)||(43021860-43022021)
chr7 (21-322)||(31025726-31026024)
chr7 (21-322)||(13554402-13554703)
chr7 (21-312)||(47105844-47106135)
chr7 (21-237)||(42565444-42565660)
chr7 (258-315)||(43021801-43021858)
chr7 (12-99)||(5021019-5021107)
chr7 (21-101)||(26078840-26078920)
chr7 (21-101)||(26102627-26102707)
[»] chr4 (8 HSPs)
chr4 (11-323)||(42953717-42954029)
chr4 (12-322)||(9993062-9993373)
chr4 (21-288)||(10353563-10353830)
chr4 (21-183)||(37615184-37615346)
chr4 (11-117)||(4525056-4525163)
chr4 (11-99)||(20669090-20669179)
chr4 (11-74)||(10426345-10426409)
chr4 (21-105)||(55298238-55298322)
[»] chr3 (10 HSPs)
chr3 (11-315)||(14868016-14868321)
chr3 (21-322)||(20198319-20198620)
chr3 (21-286)||(10867315-10867580)
chr3 (21-288)||(53946158-53946425)
chr3 (21-142)||(27497377-27497498)
chr3 (55-171)||(27969050-27969166)
chr3 (21-99)||(9163576-9163654)
chr3 (12-99)||(19824242-19824330)
chr3 (21-105)||(25873553-25873637)
chr3 (21-137)||(54440522-54440638)
[»] chr2 (13 HSPs)
chr2 (11-322)||(32243826-32244138)
chr2 (21-322)||(9669230-9669531)
chr2 (21-288)||(11234722-11234989)
chr2 (21-232)||(3119582-3119793)
chr2 (125-322)||(10597436-10597633)
chr2 (21-137)||(4040456-4040572)
chr2 (11-77)||(37139306-37139373)
chr2 (21-99)||(22052242-22052320)
chr2 (32-105)||(26681507-26681580)
chr2 (12-59)||(38443846-38443894)
chr2 (21-87)||(21614242-21614308)
chr2 (395-424)||(26608150-26608179)
chr2 (21-105)||(31594169-31594253)
[»] scaffold0707 (1 HSPs)
scaffold0707 (21-322)||(1067-1368)
[»] chr6 (5 HSPs)
chr6 (21-322)||(33572424-33572725)
chr6 (21-285)||(13085154-13085418)
chr6 (11-99)||(33804385-33804474)
chr6 (21-91)||(6284329-6284399)
chr6 (32-105)||(8873267-8873340)
[»] chr1 (8 HSPs)
chr1 (11-323)||(41503123-41503437)
chr1 (21-322)||(20795283-20795584)
chr1 (21-322)||(49265188-49265489)
chr1 (22-288)||(39429894-39430160)
chr1 (137-322)||(17827032-17827217)
chr1 (12-99)||(16873939-16874027)
chr1 (21-105)||(37530179-37530263)
chr1 (21-93)||(44929851-44929923)
[»] scaffold0308 (1 HSPs)
scaffold0308 (11-99)||(16266-16355)


Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 11 - 323
Target Start/End: Original strand, 24793356 - 24793668
Alignment:
Q  11 cataggactt-accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaatcta 109  Q
    |||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24793356 cataggacttgaccaccacatctgagttccaaaa-caaaagtggcatttttagccttcaaccacgctaaagataacaacttaattttatcaagtaatcta 24793454  T
Q  110 ggaacctcggtaatcacatttttaaacaaacgaatattacgctcattccaaatcacccaagatgtcagaagccataataaccgaagaaaagacctcctag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||     
T  24793455 ggaacctcggtaatcacatttttaaacaaacgaatattacgctcattccaaatcacccaagatgtcagaagccataataactgaagaaaagacctcctaa 24793554  T
Q  210 ctttgccgaaacctgacaaactagtgaactgcacaaaatgatgagaaatagtgttggagtcaaccccaacacaacctattcagtaccacacctgctccca 309  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||    
T  24793555 ctttgccgaaacctgaaaaactagtgaactgcacaaagtgatgagaaatagtgttggagtcaaccccaacacaacctatccagtgccgcacctgctccca 24793654  T
Q  310 taaaactgcaaaag 323  Q
    |||||| |||||||    
T  24793655 taaaaccgcaaaag 24793668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 12 - 323
Target Start/End: Complemental strand, 11394881 - 11394569
Alignment:
Q  12 ataggactt-accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaatctag 110  Q
    ||||||||| ||||||||||||||||||||||||  ||||||  ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  11394881 ataggacttgaccaccacatctgagttccaaaaataaaagtgatatttttagctttcagccacactaaagataacaacttaattttatcaagtaatctag 11394782  T
Q  111 gaacctcggtaatcacatttttaaacaaacgaatattacgctcattccaaatcacccaagatgtcagaagccataataaccgaagaaaagacctcctagc 210  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||    
T  11394781 gaacctcggtaatcacatttttaaacaaacgaatattacgcccattccaaatcacccaagatgtcagaagccatattaactgtagaaaagacctcctagc 11394682  T
Q  211 tttgccgaaacctgacaaactagtgaactgcacaaaatgatgagaaatagtgttggagtcaaccccaacacaacctattcagtaccacacctgctcccat 310  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||| |||| || |||||||||||||    
T  11394681 tttgccgaaacctgacaaactagtgaactgcacaaagtgatgagaaatagtgttgtagacaaccccaacacaacctatccagtgccgcacctgctcccat 11394582  T
Q  311 aaaactgcaaaag 323  Q
    ||||| |||||||    
T  11394581 aaaaccgcaaaag 11394569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 21 - 322
Target Start/End: Complemental strand, 43254251 - 43253949
Alignment:
Q  21 accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaatctaggaacctcggt 120  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||||| |||||||||||||| ||||||||| |||||||    
T  43254251 accaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaatttaattttatcaagcaatctaggagcctcggt 43254152  T
Q  121 aatcacatttttaaacaaacgaatattacgctcattccaaatcacccaagatgtcagaagccataataaccgaagaaaagacctcctagctttgccgaaa 220  Q
     |  |||||||||||||||||| | ||||||||| |||||||||||||||  |||| |||||| | |||| ||||||| || | |||||||||| | |||    
T  43254151 tacaacatttttaaacaaacgattgttacgctcactccaaatcacccaagtagtcaaaagccagattaactgaagaaacgatcgcctagctttggcaaaa 43254052  T
Q  221 cctgacaaactagtgaactgcacaaaatgatgagaaatagtgttggagtcaa-ccccaacacaacctattcagtaccacacctgctcccataaaactgca 319  Q
    |||||||||| |||||||||||| || |||| ||||||| |||||||||||| |||| ||||||||||| |||  || ||  |||||||||||| | |||    
T  43254051 cctgacaaacaagtgaactgcacgaagtgattagaaataatgttggagtcaaccccccacacaacctatccagagccgcagttgctcccataaatccgca 43253952  T
Q  320 aaa 322  Q
    |||    
T  43253951 aaa 43253949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 396 - 424
Target Start/End: Original strand, 4676129 - 4676157
Alignment:
Q  396 ttattaagaataatgatatagttagttag 424  Q
    |||||||||||||||||||||||||||||    
T  4676129 ttattaagaataatgatatagttagttag 4676157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 43613559 - 43613523
Alignment:
Q  51 tggcatttttagccttcagccacgctaaagataacaa 87  Q
    ||||||||||||||||||||||| || ||||||||||    
T  43613559 tggcatttttagccttcagccaccctgaagataacaa 43613523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 11 - 315
Target Start/End: Complemental strand, 19514001 - 19513696
Alignment:
Q  11 cataggactt-accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaatcta 109  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  19514001 cataggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaaccta 19513902  T
Q  110 ggaacctcggtaatcacatttttaaacaaacgaatattacgctcattccaaatcacccaagatgtcagaagccataataaccgaagaaaagacctcctag 209  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  19513901 ggaacctcggtaatcacatttttaaacaaacgaatatttcgctcattccaaatcacccaagatgtcagaagccatagtaactgaagaaaagacctcctag 19513802  T
Q  210 ctttgccgaaacctgacaaactagtgaactgcacaaaatgatgagaaatagtgttggagtcaaccccaacacaacctattcagtaccacacctgctccca 309  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||    
T  19513801 ctttgccgaaacctgacaagctagtgaactgcacaaagtgatgagaaatagtgttggagtcaaccccaacacaacctatccagtgccgcacctgctccca 19513702  T
Q  310 taaaac 315  Q
    ||||||    
T  19513701 taaaac 19513696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 21 - 293
Target Start/End: Original strand, 8571545 - 8571817
Alignment:
Q  21 accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaatctaggaacctcggt 120  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8571545 accaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacgctaaagataacaacttaattttatcaagtaatctaggaacctcggt 8571644  T
Q  121 aatcacatttttaaacaaacgaatattacgctcattccaaatcacccaagatgtcagaagccataataaccgaagaaaagacctcctagctttgccgaaa 220  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||| |||| | |||||||||||||||||||||||||||    
T  8571645 aatcacatttttaaacaaacgattattacgctcattccaaatcatccaagaagtcagaagccatattaactgtagaaaagacctcctagctttgccgaaa 8571744  T
Q  221 cctgacaaactagtgaactgcacaaaatgatgagaaatagtgttggagtcaaccccaacacaacctattcagt 293  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  8571745 cctgacatactagtgaactgcacaaagtgatgagaaatagtgttggagtcaaccccgacacaacctattcagt 8571817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 11 - 323
Target Start/End: Original strand, 4399481 - 4399794
Alignment:
Q  11 cataggactt-accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaatcta 109  Q
    |||||||||| ||||||||||||||||||||||||| |||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  4399481 cataggacttgaccaccacatctgagttccaaaaacaaaagtggcttttttagctttcagccgcgctaaagataacaacttaattttatcaagtaatcta 4399580  T
Q  110 ggaacctcggtaatcacatttttaaacaaacgaatattacgctcattccaaatcacccaagatgtcagaagccataataaccgaagaaaagacctcctag 209  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| || |||||||| |||| | ||||||||||||||||    
T  4399581 ggaacctcggtaatcacatttttaaacaaacgattgttacgctcattccaaatcacccaagatgacaaaagccatattaactgtagaaaagacctcctag 4399680  T
Q  210 ctttgccgaaacctgacaaactagtgaactgcacaaaatgatgagaaatagtgttggagtcaaccccaacacaacctattcagtaccacacctgctccca 309  Q
    ||||||||||||||||||  ||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||| || | || ||||||||||||    
T  4399681 ctttgccgaaacctgacatcctagtgaactgcacaaagtgatgagaaataatgttggagtcaacccccacacaacctatccattgccgcacctgctccca 4399780  T
Q  310 taaaactgcaaaag 323  Q
    ||| || |||||||    
T  4399781 taataccgcaaaag 4399794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 31 - 288
Target Start/End: Original strand, 17737781 - 17738038
Alignment:
Q  31 ctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaatctaggaacctcggtaatcacattt 130  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17737781 ctgagttccaaaaacaaaagtggcatttttagctttcagccacgctaaagataacaacttaattttatcaagtaatctaggaacctcggtaatcacattt 17737880  T
Q  131 ttaaacaaacgaatattacgctcattccaaatcacccaagatgtcagaagccataataaccgaagaaaagacctcctagctttgccgaaacctgacaaac 230  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||| |||||||||||| ||    
T  17737881 ttaaacaaacgattattacgctcattccaaatcacccaagatgtcagaagccatattaactgtagaaaagacctcctagctttgtcgaaacctgacatac 17737980  T
Q  231 tagtgaactgcacaaaatgatgagaaatagtgttggagtcaaccccaacacaacctat 288  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  17737981 tagtgaactgcacaaagtgatgagaaatagtgttggagtcaaccccgacacaacctat 17738038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 21 - 288
Target Start/End: Original strand, 13916889 - 13917155
Alignment:
Q  21 accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaatctaggaacctcggt 120  Q
    |||||||||| |||||||||||||| ||||||||||||||||| ||||| |||||| |  |||||||||||||||||||||| ||||||||| ||| |||    
T  13916889 accaccacatatgagttccaaaaacaaaagtggcatttttagctttcagtcacgctgacaataacaacttaattttatcaagcaatctaggagccttggt 13916988  T
Q  121 aatcacatttttaaacaaacgaatattacgctcattccaaatcacccaagatgtcagaagccataataaccgaagaaaagacctcctagctttgccgaaa 220  Q
     |  | ||||||||||||| || | |||||||||||| ||| ||||||||| |||| |||||| | |||| |||||||||| | |||||||||||| |||    
T  13916989 tacaatatttttaaacaaatgattgttacgctcattcaaaaccacccaagaagtcaaaagccagattaactgaagaaaaga-cgcctagctttgccaaaa 13917087  T
Q  221 cctgacaaactagtgaactgcacaaaatgatgagaaatagtgttggagtcaaccccaacacaacctat 288  Q
    ||||||| || |||||||||||| || |||| ||||||| |||||||||  ||||| |||||||||||    
T  13917088 cctgacatacaagtgaactgcacgaagtgattagaaataatgttggagttgacccccacacaacctat 13917155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 3199663 - 3199516
Alignment:
Q  11 cataggactt-accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacg------------------ctaaagataacaactta 91  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||                   |||||||||||||||||    
T  3199663 cataggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccactatcaacaaacaaaccagactaaagataacaactta 3199564  T
Q  92 attttatcaagtaatctaggaacctcggtaatcacatttttaaacaaa 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3199563 attttatcaagtaatctaggaacctcggtaatcacatttttaaacaaa 3199516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 325 - 396
Target Start/End: Complemental strand, 9578318 - 9578247
Alignment:
Q  325 aggagaatgccaatgaattttttggactcctagttgaggaaaccaaaagcaggagttttgcatggaattctt 396  Q
    |||||||||  ||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||    
T  9578318 aggagaatgttaatgaattttttggactcctaatcgaggaaaccaaaagcagaagttttgcatggaattctt 9578247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 6264723 - 6264639
Alignment:
Q  21 accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaa 105  Q
    ||||||||  ||||||||||||||| ||||| || |||||||| |||| |||  ||||||| ||||||||||  |||| ||||||    
T  6264723 accaccactgctgagttccaaaaacaaaagtagcttttttagctttcaaccaacctaaagacaacaacttaaccttataaagtaa 6264639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 161
Target Start/End: Original strand, 34480571 - 34480711
Alignment:
Q  21 accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaatctaggaacctcggt 120  Q
    ||||||||  |||||| |||||||| || || || |||||||| ||||||||  ||||||| | ||||||||  ||||||||||| | ||| |    |||    
T  34480571 accaccactgctgagtgccaaaaacaaaggtagcttttttagctttcagccaacctaaagacatcaacttaaccttatcaagtaaacaagggatgggggt 34480670  T
Q  121 aatcacatttttaaacaaacgaatattacgctcattccaaa 161  Q
    || |||||  ||||||| |||| ||||||| ||||||||||    
T  34480671 aaccacatgattaaacagacgattattacgttcattccaaa 34480711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 15005787 - 15005829
Alignment:
Q  21 accaccacatctgagttccaaaaacgaaagtggcatttttagc 63  Q
    |||||||||| |||||||||||||| ||||| |||||||||||    
T  15005787 accaccacatatgagttccaaaaacaaaagtagcatttttagc 15005829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 15500171 - 15500093
Alignment:
Q  21 accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatc 99  Q
    ||||||||  ||||||||||||||| ||||| || |||||||| || |||||  ||||||| || |||||||| |||||    
T  15500171 accaccactgctgagttccaaaaacaaaagtagcttttttagctttaagccaacctaaagacaataacttaatcttatc 15500093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 35123241 - 35123153
Alignment:
Q  12 ataggactt-accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatc 99  Q
    ||||||||| |||||||||||| ||| ||| |||| ||  |||| |||| ||| ||||||||| |||| |||||||| ||||| |||||    
T  35123241 ataggacttgaccaccacatctaagtaccataaacaaacatggctttttcagctttcagccaccctaatgataacaatttaatcttatc 35123153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 323
Target Start/End: Original strand, 19728091 - 19728404
Alignment:
Q  11 cataggactt-accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaatcta 109  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  19728091 cataggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacgctaaagataacaacttaattttatcaagtaatcta 19728190  T
Q  110 ggaacctcggtaatcacatttttaaacaaacgaatattacgctcattccaaatcacccaagatgtcagaagccataataaccgaagaaaagacctcctag 209  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  19728191 ggaacctcagtaatcacatttttaaacaaacgaaaattacgctcattccaaatcacccaagatgtcagaagccatattaactgaagaaaagacctcctag 19728290  T
Q  210 ctttgccgaaacctgacaaactagtgaactgcacaaaatgatgagaaatagtgttggagtcaaccccaacacaacctattcagtaccacacctgctccca 309  Q
    ||||||| ||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||| || | || |||||||| |||    
T  19728291 ctttgccaaaacctgacaaaccagtgaactgcacaaagtgatgataaatagtgttggagtcaaccccagcacaacctatccattgccgcacctgcttcca 19728390  T
Q  310 taaaactgcaaaag 323  Q
     ||||| |||||||    
T  19728391 caaaaccgcaaaag 19728404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 24 - 185
Target Start/End: Complemental strand, 43022021 - 43021860
Alignment:
Q  24 accacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaatctaggaacctcggtaat 123  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  43022021 accacatctgagttccaaaaacaaaagtggcatttttaaccttcagccacgctaaagataacaacttaattttatcaagtaacctaggaacctcggtaat 43021922  T
Q  124 cacatttttaaacaaacgaatattacgctcattccaaatcacccaagatgtcagaagccata 185  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  43021921 cacatttttaaacaaacgaatatttcgctcattccaaatcacccaagatgtcagaagccata 43021860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 21 - 322
Target Start/End: Complemental strand, 31026024 - 31025726
Alignment:
Q  21 accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaatctaggaacctcggt 120  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||||||||||| |||||||| ||||||||| |||||      
T  31026024 accaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaacttaatattatcaagcaatctaggagcctcg-- 31025927  T
Q  121 aatcacatttttaaacaaacgaatattacgctcattccaaatcacccaagatgtcagaagccataataaccgaagaaaagacctcctagctttgccgaaa 220  Q
     |  |||||||||||||||||| | ||||||||| |||||||||||||||  || | |||||| | |||| ||||||| || | |||||||||| | |||    
T  31025926 -acaacatttttaaacaaacgattgttacgctcactccaaatcacccaagtagtgaaaagccagattaactgaagaaacgatcgcctagctttggcaaaa 31025828  T
Q  221 cctgacaaactagtgaactgcacaaaatgatgagaaatagtgttggagtcaaccccaacacaacctattcagtaccacacctgctcccataaaactgcaa 320  Q
    ||| |||||| |||||||||||| || |||| ||||||| |||||||||||||||| ||||||||||| |||  || ||  |||||||||||| | ||||    
T  31025827 cctaacaaacaagtgaactgcacgaagtgattagaaataatgttggagtcaacccccacacaacctatccagagccgcagttgctcccataaatccgcaa 31025728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 21 - 322
Target Start/End: Complemental strand, 13554703 - 13554402
Alignment:
Q  21 accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaatctaggaacctcggt 120  Q
    |||||||||| |||||||||||||| ||||||||||||||||| || |||||| |||| ||||||||||||||||||||||| || |||||| |||||||    
T  13554703 accaccacatatgagttccaaaaacaaaagtggcatttttagctttaagccacactaacgataacaacttaattttatcaagcaaactaggagcctcggt 13554604  T
Q  121 aatcacatttttaaacaaacgaatattacgctcattccaaatcacccaagatgtcagaagccataataaccgaagaaaagacctcctagctttgccgaaa 220  Q
     |  |||||||||||||||||| | ||||||||| |||| |||||||| |  |||| |||||| | |||| ||||||| || | |||||||||| | |||    
T  13554603 tacaacatttttaaacaaacgattgttacgctcactccagatcacccacgtagtcaaaagccagattaactgaagaaacgatcgcctagctttggcaaaa 13554504  T
Q  221 cctgacaaactagtgaactgcacaaaatgatgagaaatagtgttggagtcaaccccaacacaacctattcagtaccacacctgctcccataaaactgcaa 320  Q
    ||||| |||| |||||||||||| ||||||| ||||||| |||||||||| ||||| ||||||||||| |||  || ||  |||||||||||| | ||||    
T  13554503 cctgataaacaagtgaactgcacgaaatgattagaaataatgttggagtcgacccccacacaacctatccagagccgcaattgctcccataaatccgcaa 13554404  T
Q  321 aa 322  Q
    ||    
T  13554403 aa 13554402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 21 - 312
Target Start/End: Complemental strand, 47106135 - 47105844
Alignment:
Q  21 accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaatctaggaacctcggt 120  Q
    |||||||||| |||||||||||||| ||||||||||||||||| || || ||| |||| |||||||| || ||||||||||| ||||||||| |||||||    
T  47106135 accaccacatatgagttccaaaaacaaaagtggcatttttagctttaagtcacactaacgataacaatttgattttatcaagcaatctaggagcctcggt 47106036  T
Q  121 aatcacatttttaaacaaacgaatattacgctcattccaaatcacccaagatgtcagaagccataataaccgaagaaaagacctcctagctttgccgaaa 220  Q
     |  |||||||||||||||||| ||||||||||| |||||||||||||||  |||| |||||| | |||| ||||||| || | |||||||||| | |||    
T  47106035 tacaacatttttaaacaaacgattattacgctcactccaaatcacccaagtagtcaaaagccagattaactgaagaaacgatcgcctagctttggcaaaa 47105936  T
Q  221 cctgacaaactagtgaactgcacaaaatgatgagaaatagtgttggagtcaaccccaacacaacctattcagtaccacacctgctcccataa 312  Q
    ||||| | || |||||||||||| || |||| ||||||| |||||||||| ||||| ||||| ||||| |||  || ||  |||||||||||    
T  47105935 cctgatagacaagtgaactgcacgaagtgattagaaataatgttggagtcgacccccacacagcctatccagagccgcaattgctcccataa 47105844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 21 - 237
Target Start/End: Original strand, 42565444 - 42565660
Alignment:
Q  21 accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaatctaggaacctcggt 120  Q
    |||||||||| |||||||||||||| ||||||||||||||||| || |||||| |||| ||||||||||||||||||||||| ||||||||| |||||||    
T  42565444 accaccacatatgagttccaaaaacaaaagtggcatttttagctttaagccacactaacgataacaacttaattttatcaagcaatctaggagcctcggt 42565543  T
Q  121 aatcacatttttaaacaaacgaatattacgctcattccaaatcacccaagatgtcagaagccataataaccgaagaaaagacctcctagctttgccgaaa 220  Q
     |  |||||||||||||||||| ||||||||||| |||||||||||||||  |||| |||||| | |||| |||||||  | | |||| ||||| | |||    
T  42565544 tacaacatttttaaacaaacgattattacgctcactccaaatcacccaagtagtcaaaagccagattaactgaagaaactatcgcctaactttggcaaaa 42565643  T
Q  221 cctgacaaactagtgaa 237  Q
    ||||| |||| ||||||    
T  42565644 cctgataaacaagtgaa 42565660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 258 - 315
Target Start/End: Complemental strand, 43021858 - 43021801
Alignment:
Q  258 tagtgttggagtcaaccccaacacaacctattcagtaccacacctgctcccataaaac 315  Q
    ||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||    
T  43021858 tagtgttggagtcaaccccaacacaacctatccagtgccgcacctgctcccataaaac 43021801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 5021107 - 5021019
Alignment:
Q  12 ataggactt-accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatc 99  Q
    ||||||||| |||||||||||||||| ||| |||| ||  |||| |||||||| ||||||||| |||| |||||||| ||||| |||||    
T  5021107 ataggacttgaccaccacatctgagtaccataaacaaacatggcttttttagctttcagccaccctaatgataacaatttaatcttatc 5021019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 26078920 - 26078840
Alignment:
Q  21 accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaa 101  Q
    |||||||| ||||||| |||||||| || ||||  |||||||| ||||||||||||||  ||||||  ||||| |||||||    
T  26078920 accaccacctctgagtaccaaaaacaaatgtggtttttttagctttcagccacgctaacaataacagtttaatcttatcaa 26078840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 26102707 - 26102627
Alignment:
Q  21 accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaa 101  Q
    |||||||| ||||||| |||||||| || ||||  |||||||| ||||||||||||||  ||||||  ||||| |||||||    
T  26102707 accaccacctctgagtaccaaaaacaaatgtggtttttttagctttcagccacgctaacaataacagtttaatcttatcaa 26102627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 323
Target Start/End: Complemental strand, 42954029 - 42953717
Alignment:
Q  11 cataggactt-accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaatcta 109  Q
    |||||||||| |||||||||| |||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  42954029 cataggacttgaccaccacatttgagttccaaaaacaaaagtggcatttttatctttcagccacgctaaagataacaacttaattttatcaagtaatcta 42953930  T
Q  110 ggaacctcggtaatcacatttttaaacaaacgaatattacgctcattccaaatcacccaagatgtcagaagccataataaccgaagaaaagacctcctag 209  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||  | | ||||||||||||||    
T  42953929 ggaacctcggtaatcacatttttaaacatacgattattacgctcattccaaatcacccaagatgtcagaagccatattaattgtaaaaaagacctcctag 42953830  T
Q  210 ctttgccgaaacctgacaaactagtgaactgcacaaaatgatgagaaatagtgttggagtcaaccccaacacaacctattcagtaccacacctgctccca 309  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||    
T  42953829 ctttgccgaaacctgacatactagtgaactgcacaaagtgatgagaaatagtgttggagtcaaccccaacacaacctatccagt-ccgcacctgctccca 42953731  T
Q  310 taaaactgcaaaag 323  Q
    |||||| |||||||    
T  42953730 taaaaccgcaaaag 42953717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 12 - 322
Target Start/End: Complemental strand, 9993373 - 9993062
Alignment:
Q  12 ataggactt-accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaatctag 110  Q
    ||||||||| ||||||||||||||||||||||||| |||||| |||||||||  |||||||||  ||| ||||||||||||||||||||||| | |||||    
T  9993373 ataggacttgaccaccacatctgagttccaaaaacaaaagtgacatttttagttttcagccactataacgataacaacttaattttatcaagcagtctag 9993274  T
Q  111 gaacctcggtaatcacatttttaaacaaacgaatattacgctcattccaaatcacccaagatgtcagaagccataataaccgaagaaaagacctcctagc 210  Q
    || ||||||| | |||||||||||||||||||  ||||||||||||||||| ||||||||||| || |||| | | |||| |||||||||||||||||||    
T  9993273 gagcctcggttaccacatttttaaacaaacgatgattacgctcattccaaaccacccaagatgacaaaagctagattaactgaagaaaagacctcctagc 9993174  T
Q  211 tttgccgaaacctgacaaactagtgaactgcacaaaatgatgagaaatagtgttggagtcaaccccaacacaacctattcagtaccacacctgctcccat 310  Q
    |||||| |||||||||| || ||||||||||||||| |||| ||||||| ||||||||||||| || ||||||||||| |||  || ||| |||||||||    
T  9993173 tttgccaaaacctgacatacaagtgaactgcacaaagtgattagaaataatgttggagtcaactcccacacaacctatccagcgccgcacttgctcccat 9993074  T
Q  311 aaaactgcaaaa 322  Q
    ||||| ||||||    
T  9993073 aaaaccgcaaaa 9993062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 21 - 288
Target Start/End: Original strand, 10353563 - 10353830
Alignment:
Q  21 accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaatctaggaacctcggt 120  Q
    ||||||||||||||||||| ||||| |||||  |||||||| | ||||||||| |||| ||| |||||||||||||||| || ||||||||| |||| ||    
T  10353563 accaccacatctgagttccgaaaacaaaagttacatttttaactttcagccacactaacgatgacaacttaattttatctagcaatctaggagcctcagt 10353662  T
Q  121 aatcacatttttaaacaaacgaatattacgctcattccaaatcacccaagatgtcagaagccataataaccgaagaaaagacctcctagctttgccgaaa 220  Q
     |  |||||||||||||||||| ||||||||||| |||||||||||||||  |||| |||||| | |||| ||||||| || | ||||||||||   |||    
T  10353663 tacaacatttttaaacaaacgattattacgctcactccaaatcacccaagtagtcaaaagccagattaactgaagaaacgatcgcctagctttggtaaaa 10353762  T
Q  221 cctgacaaactagtgaactgcacaaaatgatgagaaatagtgttggagtcaaccccaacacaacctat 288  Q
    |||||||||| |||||||||||| || |||| ||||||| |||||||||| ||||| |||||||||||    
T  10353763 cctgacaaacaagtgaactgcacgaagtgattagaaatactgttggagtcgacccccacacaacctat 10353830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 21 - 183
Target Start/End: Original strand, 37615184 - 37615346
Alignment:
Q  21 accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaatctaggaacctcggt 120  Q
    ||||||||||||||||||||||||| ||||||||||||||| | ||||||| | |||| ||||||||||||||||||||||| ||||||||| |||||||    
T  37615184 accaccacatctgagttccaaaaacaaaagtggcatttttaactttcagccgcactaacgataacaacttaattttatcaagcaatctaggagcctcggt 37615283  T
Q  121 aatcacatttttaaacaaacgaatattacgctcattccaaatcacccaagatgtcagaagcca 183  Q
     |  |||||||||||||||||| | ||||||||| ||||||||| |||||  |||| ||||||    
T  37615284 tacaacatttttaaacaaacgattgttacgctcactccaaatcatccaagtagtcaaaagcca 37615346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 4525163 - 4525056
Alignment:
Q  11 cataggactt-accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaatcta 109  Q
    |||||||||| |||||||| ||| |||  ||||||| |||||||| |||||||| ||||| ||||||||||||||||| ||||| |||||||| ||||||    
T  4525163 cataggacttgaccaccacgtcttagtatcaaaaacaaaagtggcttttttagctttcagtcacgctaaagataacaatttaatcttatcaagcaatcta 4525064  T
Q  110 ggaacctc 117  Q
    || |||||    
T  4525063 gggacctc 4525056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 20669090 - 20669179
Alignment:
Q  11 cataggactt-accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatc 99  Q
    |||||||||| |||||||||||||||| ||| |||| ||  |||| ||||||||||||| |||| |||| |||||||| ||||| |||||    
T  20669090 cataggacttgaccaccacatctgagtaccataaacaaacatggcttttttagccttcatccaccctaatgataacaatttaatcttatc 20669179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 74
Target Start/End: Complemental strand, 10426409 - 10426345
Alignment:
Q  11 cataggactt-accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacg 74  Q
    |||||||||| |||||||||||||||||| |||||  |||||| |||||||||| |||| |||||    
T  10426409 cataggacttgaccaccacatctgagttcaaaaaataaaagtgacatttttagctttcacccacg 10426345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 55298238 - 55298322
Alignment:
Q  21 accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaa 105  Q
    ||||||||  |||||| |||||||| || || || |||||||| |||| |||  ||| ||| ||||||||||| |||||||||||    
T  55298238 accaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaacaacttaatcttatcaagtaa 55298322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 315
Target Start/End: Complemental strand, 14868321 - 14868016
Alignment:
Q  11 cataggactt-accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaatcta 109  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||    
T  14868321 cataggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccaagctaaagataacaacataattttatcaagtaatcta 14868222  T
Q  110 ggaacctcggtaatcacatttttaaacaaacgaatattacgctcattccaaatcacccaagatgtcagaagccataataaccgaagaaaagacctcctag 209  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||| ||||||||||||||||||    
T  14868221 ggaacctcagtaaacacatttttaaacaaacgaatattacgctcattccaaatcacctaagatgccagaagccatattaactgaagaaaagacctcctag 14868122  T
Q  210 ctttgccgaaacctgacaaactagtgaactgcacaaaatgatgagaaatagtgttggagtcaaccccaacacaacctattcagtaccacacctgctccca 309  Q
    ||||||| ||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||  |||| || ||||||||||||    
T  14868121 ctttgccaaaacctgccaaaccagtgaactgcacaaagtgatgagaaatagtgttggagtcaaccccagcacaacctaaccagtgccgcacctgctccca 14868022  T
Q  310 taaaac 315  Q
    ||||||    
T  14868021 taaaac 14868016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 21 - 322
Target Start/End: Complemental strand, 20198620 - 20198319
Alignment:
Q  21 accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaatctaggaacctcggt 120  Q
    ||||||||||||||||||||||||| ||||||  ||||||||| ||||||||| |||| ||||||||||||||||||||||| ||||||||| |||||||    
T  20198620 accaccacatctgagttccaaaaacaaaagtgatatttttagctttcagccacactaacgataacaacttaattttatcaagcaatctaggagcctcggt 20198521  T
Q  121 aatcacatttttaaacaaacgaatattacgctcattccaaatcacccaagatgtcagaagccataataaccgaagaaaagacctcctagctttgccgaaa 220  Q
     |  |||||||||||||||||| | ||||||||| ||||||||||| |||  |||| |||||| | || | ||||||| || | |||||||||| | |||    
T  20198520 tacaacatttttaaacaaacgattgttacgctcactccaaatcaccaaagtagtcaaaagccagattagctgaagaaacgatcgcctagctttggcaaaa 20198421  T
Q  221 cctgacaaactagtgaactgcacaaaatgatgagaaatagtgttggagtcaaccccaacacaacctattcagtaccacacctgctcccataaaactgcaa 320  Q
    |||||||||| |||||||||||| || |||| ||||||| |||||||||| ||||| ||||||||||| |||  || ||  |||||||||||| | ||||    
T  20198420 cctgacaaacaagtgaactgcacgaagtgattagaaataatgttggagtcgacccccacacaacctatccagagccgcaattgctcccataaatccgcaa 20198321  T
Q  321 aa 322  Q
    ||    
T  20198320 aa 20198319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 21 - 286
Target Start/End: Original strand, 10867315 - 10867580
Alignment:
Q  21 accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaatctaggaacctcggt 120  Q
    ||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||| ||||  |    
T  10867315 accaccacatctgagttccaaaaacaaaagtggtatttttagctttcagccacgctaacgataacaacttaattttatcaagcaatctaggagcctcaat 10867414  T
Q  121 aatcacatttttaaacaaacgaatattacgctcattccaaatcacccaagatgtcagaagccataataaccgaagaaaagacctcctagctttgccgaaa 220  Q
     |  |||||||||| ||||||  | |||||||||||||||| ||||||||| |||| || ||| | |||| || |||| |||| |||||||||||| |||    
T  10867415 tacaacatttttaagcaaacggttgttacgctcattccaaaccacccaagaagtcaaaatccagattaactgatgaaatgaccacctagctttgccaaaa 10867514  T
Q  221 cctgacaaactagtgaactgcacaaaatgatgagaaatagtgttggagtcaaccccaacacaacct 286  Q
    |||||||  | |||||||||| |||| |||| ||||||| |||||||||| ||||| |||||||||    
T  10867515 cctgacatgcaagtgaactgctcaaagtgattagaaataatgttggagtcgacccccacacaacct 10867580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 21 - 288
Target Start/End: Complemental strand, 53946425 - 53946158
Alignment:
Q  21 accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaatctaggaacctcggt 120  Q
    ||||||||||||||||||| ||||| |||||  |||||||||| |||| ||||  ||| ||||||||||||||||||||||| |||||| || ||| |||    
T  53946425 accaccacatctgagttcctaaaacaaaagttacatttttagctttcaaccacattaacgataacaacttaattttatcaagcaatctatgagcctaggt 53946326  T
Q  121 aatcacatttttaaacaaacgaatattacgctcattccaaatcacccaagatgtcagaagccataataaccgaagaaaagacctcctagctttgccgaaa 220  Q
     |  |||||||||||||||||| ||||||||| | |||||||||||||||  ||||||||||| | |||| ||| ||| || | |||||||||| | |||    
T  53946325 tacaacatttttaaacaaacgattattacgcttactccaaatcacccaagtagtcagaagccagattaactgaataaacgatcgcctagctttggcaaaa 53946226  T
Q  221 cctgacaaactagtgaactgcacaaaatgatgagaaatagtgttggagtcaaccccaacacaacctat 288  Q
    |||||||||| |||||||||||| || |||| ||||||| |||||||||| ||||| |||||||||||    
T  53946225 cctgacaaacaagtgaactgcacgaagtgattagaaataatgttggagtcgacccccacacaacctat 53946158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 27497377 - 27497498
Alignment:
Q  21 accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaatctaggaacctcggt 120  Q
    |||||||||||||| |||||||||| ||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||  ||||||    
T  27497377 accaccacatctgaattccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaacttaattttatcaagtaatctaggagtctcggt 27497476  T
Q  121 aatcacatttttaaacaaacga 142  Q
     |  ||| ||||||||||||||    
T  27497477 tacaacagttttaaacaaacga 27497498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 55 - 171
Target Start/End: Original strand, 27969050 - 27969166
Alignment:
Q  55 atttttagccttcagccacgctaaagataacaacttaattttatcaagtaatctaggaacctcggtaatcacatttttaaacaaacgaatattacgctca 154  Q
    ||||||||| ||||||||| |||| ||||||||||||||| ||||||| |||||||||| ||| || |  ||||| |||||||||||| ||||||| ||     
T  27969050 atttttagctttcagccacactaacgataacaacttaattctatcaagcaatctaggaatctcagttacaacattattaaacaaacgattattacgttcg 27969149  T
Q  155 ttccaaatcacccaaga 171  Q
    ||||| |||||||||||    
T  27969150 ttccacatcacccaaga 27969166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 9163654 - 9163576
Alignment:
Q  21 accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatc 99  Q
    |||||||||||||||| ||| |||| ||  |||  |||||||| ||||||||| ||||||||||||| ||||| |||||    
T  9163654 accaccacatctgagtaccataaacaaacatggtttttttagctttcagccaccctaaagataacaatttaatcttatc 9163576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 19824330 - 19824242
Alignment:
Q  12 ataggactt-accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatc 99  Q
    ||||||||| ||||||||||||||||  || |||| ||  |||| |||||||| ||||||||| |||| |||| ||| ||||| |||||    
T  19824330 ataggacttgaccaccacatctgagtatcataaacaaacatggcttttttagctttcagccaccctaatgatatcaatttaatcttatc 19824242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 25873637 - 25873553
Alignment:
Q  21 accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaa 105  Q
    ||||||||  ||||||||||||||| ||  | || |||||||| ||||||||  ||||||| | ||||||||  |||||||||||    
T  25873637 accaccactgctgagttccaaaaacaaagatagcttttttagctttcagccaacctaaagacatcaacttaaccttatcaagtaa 25873553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 137
Target Start/End: Complemental strand, 54440638 - 54440522
Alignment:
Q  21 accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaatctaggaacctcggt 120  Q
    |||||||| | ||||| |||||| | ||  |||| |||||| | |||| |||| |||| |||||||| || || ||||||||||| |||||||| || ||    
T  54440638 accaccacctatgagtaccaaaatcaaatatggcttttttacctttcatccacactaacgataacaatttgatcttatcaagtaacctaggaacatcagt 54440539  T
Q  121 aatcacatttttaaaca 137  Q
    ||  ||||| |||||||    
T  54440538 aacaacattattaaaca 54440522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 322
Target Start/End: Complemental strand, 32244138 - 32243826
Alignment:
Q  11 cataggactt-accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaatcta 109  Q
    |||||||||| ||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||    
T  32244138 cataggacttgaccaccacatctgagtttcaaaaacaaaagtggcatttttagctttcagccacgctaacgataacaacttaattttatcaagcaatcta 32244039  T
Q  110 ggaacctcggtaatcacatttttaaacaaacgaatattacgctcattccaaatcacccaagatgtcagaagccataataaccgaagaaaagacctcctag 209  Q
    |||  |||||| | ||||||||||||||||||| | |||||||||||||||| ||||||||||| || |||||| | |||  ||||||||||||||||||    
T  32244038 ggagtctcggttaccacatttttaaacaaacgattgttacgctcattccaaaccacccaagatggcaaaagccaaattaattgaagaaaagacctcctag 32243939  T
Q  210 ctttgccgaaacctgacaaactagtgaactgcacaaaatgatgagaaatagtgttggagtcaaccccaacacaacctattcagtaccacacctgctccca 309  Q
    ||||||| |||||||||| || ||||||||||||||| |||| ||||||| |||||||||||||||| ||||||||||| ||| ||| ||||||||||||    
T  32243938 ctttgccaaaacctgacatacaagtgaactgcacaaagtgattagaaataatgttggagtcaacccccacacaacctatccagcaccgcacctgctccca 32243839  T
Q  310 taaaactgcaaaa 322  Q
    |||||| ||||||    
T  32243838 taaaaccgcaaaa 32243826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 21 - 322
Target Start/End: Complemental strand, 9669531 - 9669230
Alignment:
Q  21 accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaatctaggaacctcggt 120  Q
    |||||||||| |||||||||||||| |||||||| |||||||| || |||||| |||| ||||||||||||||||||||||| ||||||||| |||||||    
T  9669531 accaccacatatgagttccaaaaacaaaagtggcctttttagctttaagccacactaacgataacaacttaattttatcaagcaatctaggagcctcggt 9669432  T
Q  121 aatcacatttttaaacaaacgaatattacgctcattccaaatcacccaagatgtcagaagccataataaccgaagaaaagacctcctagctttgccgaaa 220  Q
     |  |||||||||||||||||| | ||| ||||| |||||||||||||||  |||| |||||| | |||| ||||||| || | |||||||||| | |||    
T  9669431 tacaacatttttaaacaaacgattgttaggctcactccaaatcacccaagtagtcaaaagccagattaactgaagaaacgatcgcctagctttggcaaaa 9669332  T
Q  221 cctgacaaactagtgaactgcacaaaatgatgagaaatagtgttggagtcaaccccaacacaacctattcagtaccacacctgctcccataaaactgcaa 320  Q
    ||||| |||| |||||| ||||| || |||||||||||| |||||||||| ||||| ||||||||||| |||  || ||  |||||||||||| | ||||    
T  9669331 cctgataaacaagtgaattgcacgaagtgatgagaaataatgttggagtcgacccccacacaacctatccagagccgcaattgctcccataaatccgcaa 9669232  T
Q  321 aa 322  Q
    ||    
T  9669231 aa 9669230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 21 - 288
Target Start/End: Complemental strand, 11234989 - 11234722
Alignment:
Q  21 accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaatctaggaacctcggt 120  Q
    ||||||||||||||||||||||||| |||||   ||||||||| ||||||||| |||| ||||||||||||||||||||||| ||||||||| |||| ||    
T  11234989 accaccacatctgagttccaaaaacaaaagttatatttttagctttcagccacactaacgataacaacttaattttatcaagcaatctaggagcctcagt 11234890  T
Q  121 aatcacatttttaaacaaacgaatattacgctcattccaaatcacccaagatgtcagaagccataataaccgaagaaaagacctcctagctttgccgaaa 220  Q
     |  |||||||||||||||||| ||||||| ||| ||||||||| |||||  || | |||||| | |||| ||||||| || | |||||||||| | |||    
T  11234889 tacaacatttttaaacaaacgattattacgatcactccaaatcaaccaagtagttaaaagccagattaactgaagaaacgatcgcctagctttggcaaaa 11234790  T
Q  221 cctgacaaactagtgaactgcacaaaatgatgagaaatagtgttggagtcaaccccaacacaacctat 288  Q
    |||||||||| |||||||||||| || |||| ||||||| |||||||||| ||||| ||| |||||||    
T  11234789 cctgacaaacaagtgaactgcacgaagtgattagaaataatgttggagtcgacccccacaaaacctat 11234722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 21 - 232
Target Start/End: Original strand, 3119582 - 3119793
Alignment:
Q  21 accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaatctaggaacctcggt 120  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||| ||||| |||| ||||||||||||||||||||||| |||||||||  ||||||    
T  3119582 accaccacatctgagttccaaaaacaaaagtggcatttttagctttccgccacactaacgataacaacttaattttatcaagcaatctaggagtctcggt 3119681  T
Q  121 aatcacatttttaaacaaacgaatattacgctcattccaaatcacccaagatgtcagaagccataataaccgaagaaaagacctcctagctttgccgaaa 220  Q
     |  |||||||||||||||||| | ||||||||| |||||||||||||||  |||| || ||| | |||| ||||||| || | ||||| |||| | ||     
T  3119682 tacaacatttttaaacaaacgattgttacgctcactccaaatcacccaagtagtcaaaaaccagattaactgaagaaacgatcgcctagttttggcaaag 3119781  T
Q  221 cctgacaaacta 232  Q
    ||||||||||||    
T  3119782 cctgacaaacta 3119793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 125 - 322
Target Start/End: Original strand, 10597436 - 10597633
Alignment:
Q  125 acatttttaaacaaacgaatattacgctcattccaaatcacccaagatgtcagaagccataataaccgaagaaaagacctcctagctttgccgaaacctg 224  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||  |||| |||||||| ||||  |||||| || | |||||||||| | |||||||    
T  10597436 acatttttaaacaaacgattattacgctcactccaaatcacccaagtagtcaaaagccatattaactcaagaaacgatcgcctagctttggcaaaacctg 10597535  T
Q  225 acaaactagtgaactgcacaaaatgatgagaaatagtgttggagtcaaccccaacacaacctattcagtaccacacctgctcccataaaactgcaaaa 322  Q
    |||||| |||||||||||| || |||| ||||||| |||||||||| ||||| ||||| ||||| |||  || ||  |||||||||||| | ||||||    
T  10597536 acaaacaagtgaactgcacgaagtgattagaaataatgttggagtcgacccccacacagcctatccagagccgcaattgctcccataaatccgcaaaa 10597633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 137
Target Start/End: Complemental strand, 4040572 - 4040456
Alignment:
Q  21 accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaatctaggaacctcggt 120  Q
    |||||||| | | ||| |||||||| || ||||| |||||||| |||||||||||||| |||||||  ||||| ||||||||||| |||||||| |||||    
T  4040572 accaccacctatcagtaccaaaaacaaatgtggcttttttagctttcagccacgctaacgataacagtttaatcttatcaagtaacctaggaacatcggt 4040473  T
Q  121 aatcacatttttaaaca 137  Q
     |  ||||| |||||||    
T  4040472 tacaacattattaaaca 4040456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 37139306 - 37139373
Alignment:
Q  11 cataggactt-accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgcta 77  Q
    |||||||||| ||||||||||||||||||||||||| ||| || |||||||||| |||||||||||||    
T  37139306 cataggacttgaccaccacatctgagttccaaaaacaaaaatgacatttttagctttcagccacgcta 37139373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 22052242 - 22052320
Alignment:
Q  21 accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatc 99  Q
    ||||||||  ||||||||||||||| ||||| || |||||||| || |||||  ||||||| ||||||||||| |||||    
T  22052242 accaccactgctgagttccaaaaacaaaagtagcttttttagctttaagccaacctaaagacaacaacttaatcttatc 22052320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 26681507 - 26681580
Alignment:
Q  32 tgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaa 105  Q
    |||||||||||||| || || || |||||||| ||||||||  ||||||| ||||||||||  |||||||||||    
T  26681507 tgagttccaaaaacaaaggtagcttttttagctttcagccaacctaaagacaacaacttaaccttatcaagtaa 26681580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 38443894 - 38443846
Alignment:
Q  12 ataggactt-accaccacatctgagttccaaaaacgaaagtggcatttt 59  Q
    ||||||||| ||||||||||||||||||||||||| |||||| ||||||    
T  38443894 ataggacttgaccaccacatctgagttccaaaaacaaaagtgacatttt 38443846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 21614242 - 21614308
Alignment:
Q  21 accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaa 87  Q
    ||||||||||||| || ||||| || ||   |||||||||||||||||||||| ||| |||||||||    
T  21614242 accaccacatctgggtgccaaacacaaacacggcatttttagccttcagccaccctagagataacaa 21614308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 424
Target Start/End: Complemental strand, 26608179 - 26608150
Alignment:
Q  395 tttattaagaataatgatatagttagttag 424  Q
    ||||||||||||||||||||||||||||||    
T  26608179 tttattaagaataatgatatagttagttag 26608150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 31594169 - 31594253
Alignment:
Q  21 accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaa 105  Q
    ||||||||  ||||||||||||||| || || || |||||||| ||||||||  ||||||| | ||| ||||  |||||||||||    
T  31594169 accaccactgctgagttccaaaaacaaaggtagcttttttagctttcagccaacctaaagacatcaatttaaccttatcaagtaa 31594253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707 (Bit Score: 182; Significance: 3e-98; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 21 - 322
Target Start/End: Original strand, 1067 - 1368
Alignment:
Q  21 accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaatctaggaacctcggt 120  Q
    |||||||||| |||||||||||||  ||||||| ||||||||  ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1067 accaccacatttgagttccaaaaagaaaagtggtatttttagatttcagtcacgctaatgataacaacttaattttatcaagtaatctaggaacctcggt 1166  T
Q  121 aatcacatttttaaacaaacgaatattacgctcattccaaatcacccaagatgtcagaagccataataaccgaagaaaagacctcctagctttgccgaaa 220  Q
     ||||||||||||||||||||| | |||||||||||||||||||||||||||| || |||||| | |||| |||||||| ||||||||| |||||| |||    
T  1167 tatcacatttttaaacaaacgattgttacgctcattccaaatcacccaagatgacaaaagccagattaactgaagaaaaaacctcctagttttgccaaaa 1266  T
Q  221 cctgacaaactagtgaactgcacaaaatgatgagaaatagtgttggagtcaaccccaacacaacctattcagtaccacacctgctcccataaaactgcaa 320  Q
    ||||| | || ||||||||||||||| |||| ||||||| ||||| |||||||||| ||||||||||| |||| ||||||||||||||||||||| ||||    
T  1267 cctgatatacaagtgaactgcacaaagtgattagaaataatgttgaagtcaacccccacacaacctatccagtgccacacctgctcccataaaaccgcaa 1366  T
Q  321 aa 322  Q
    ||    
T  1367 aa 1368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 182; Significance: 3e-98; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 21 - 322
Target Start/End: Complemental strand, 33572725 - 33572424
Alignment:
Q  21 accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaatctaggaacctcggt 120  Q
    |||||||||| |||||||||||||  ||||||| ||||||||  ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33572725 accaccacatttgagttccaaaaagaaaagtggtatttttagatttcagtcacgctaatgataacaacttaattttatcaagtaatctaggaacctcggt 33572626  T
Q  121 aatcacatttttaaacaaacgaatattacgctcattccaaatcacccaagatgtcagaagccataataaccgaagaaaagacctcctagctttgccgaaa 220  Q
     ||||||||||||||||||||| | |||||||||||||||||||||||||||| || |||||| | |||| |||||||| ||||||||| |||||| |||    
T  33572625 tatcacatttttaaacaaacgattgttacgctcattccaaatcacccaagatgacaaaagccagattaactgaagaaaaaacctcctagttttgccaaaa 33572526  T
Q  221 cctgacaaactagtgaactgcacaaaatgatgagaaatagtgttggagtcaaccccaacacaacctattcagtaccacacctgctcccataaaactgcaa 320  Q
    ||||| | || ||||||||||||||| |||| ||||||| ||||| |||||||||| ||||||||||| |||| ||||||||||||||||||||| ||||    
T  33572525 cctgatatacaagtgaactgcacaaagtgattagaaataatgttgaagtcaacccccacacaacctatccagtgccacacctgctcccataaaaccgcaa 33572426  T
Q  321 aa 322  Q
    ||    
T  33572425 aa 33572424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 21 - 285
Target Start/End: Original strand, 13085154 - 13085418
Alignment:
Q  21 accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaatctaggaacctcggt 120  Q
    ||||||||| ||| ||||||||||| |||||  |||||||||| ||||||||| |||| |||||||||||||||||||| || ||||||||| |||| ||    
T  13085154 accaccacaactgggttccaaaaacaaaagtcacatttttagctttcagccacactaacgataacaacttaattttatctagcaatctaggagcctcagt 13085253  T
Q  121 aatcacatttttaaacaaacgaatattacgctcattccaaatcacccaagatgtcagaagccataataaccgaagaaaagacctcctagctttgccgaaa 220  Q
     |  |||||||||||||||||| ||||||||||| |||||||||||||||  |||| |||||| | |||| ||||||| || | ||||||||||   |||    
T  13085254 tacaacatttttaaacaaacgattattacgctcactccaaatcacccaagtggtcaaaagccagattaactgaagaaacgatcgcctagctttggtaaaa 13085353  T
Q  221 cctgacaaactagtgaactgcacaaaatgatgagaaatagtgttggagtcaaccccaacacaacc 285  Q
    |||||||||| |||||||||||| || | || ||||||| |||||||||| ||||| ||||||||    
T  13085354 cctgacaaacaagtgaactgcacgaagtaattagaaatactgttggagtcgacccccacacaacc 13085418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 33804385 - 33804474
Alignment:
Q  11 cataggactt-accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatc 99  Q
    |||||||||| |||||||||||||||| ||| |||| ||  ||||||||||||| || |||||| |||| |||||||| ||||| |||||    
T  33804385 cataggacttgaccaccacatctgagtaccataaacaaacatggcatttttagctttaagccaccctaatgataacaatttaatcttatc 33804474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 6284329 - 6284399
Alignment:
Q  21 accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaactta 91  Q
    ||||||||||||||||| ||||||| |||||   ||||||||| |||| |||| |||| ||||||||||||    
T  6284329 accaccacatctgagtttcaaaaacaaaagttatatttttagctttcaaccacactaacgataacaactta 6284399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 8873340 - 8873267
Alignment:
Q  32 tgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaa 105  Q
    |||||||||||||| || || || |||||||| ||||||||  ||||||| | ||||||||  |||||||||||    
T  8873340 tgagttccaaaaacaaaggtagcttttttagctttcagccaacctaaagacatcaacttaaccttatcaagtaa 8873267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 179; Significance: 2e-96; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 11 - 323
Target Start/End: Complemental strand, 41503437 - 41503123
Alignment:
Q  11 cataggactt-accaccacatctgagttccaaaaacgaaagtggcatttttagcctt-cagccacgctaaagataacaacttaattttatcaagtaatct 108  Q
    |||||||||| ||||||||||||||||||||||||| |||||||| | |||||| || ||| |||||||||||||||| |||||||||||||||||||||    
T  41503437 cataggacttgaccaccacatctgagttccaaaaacaaaagtggcttgtttagcttttcagtcacgctaaagataacatcttaattttatcaagtaatct 41503338  T
Q  109 aggaacctcggtaatcacatttttaaacaaacgaatattacgctcattccaaatcacccaagatgtcagaagccataataaccgaagaaaagacctccta 208  Q
    ||||||||| ||||||||||||||||||||| || | |||||||| ||||||||||||||||||| || |||||| | |||| |||||||||||||| ||    
T  41503337 aggaacctcagtaatcacatttttaaacaaatgattgttacgctcgttccaaatcacccaagatgacaaaagccagattaactgaagaaaagacctctta 41503238  T
Q  209 gctttgccgaaacctgacaaactagtgaactgcacaaaatgatgagaaatagtgttggagtcaaccccaacacaacctattcagtaccacacctgctccc 308  Q
    ||||||||||||||||||| ||||||||| ||||  || |||| ||||||| |||||||||||||||| ||||||||||| ||||  | |||||||||||    
T  41503237 gctttgccgaaacctgacatactagtgaattgcatgaagtgatcagaaataatgttggagtcaacccccacacaacctatccagtgtcgcacctgctccc 41503138  T
Q  309 ataaaactgcaaaag 323  Q
    ||||||| |||||||    
T  41503137 ataaaaccgcaaaag 41503123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 21 - 322
Target Start/End: Original strand, 20795283 - 20795584
Alignment:
Q  21 accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaatctaggaacctcggt 120  Q
    |||||||||| ||| |||||||||| |||||| |||||||||| || |||||| |||| ||||||||||||||||||||||| |||||||||  ||||||    
T  20795283 accaccacatatgacttccaaaaacaaaagtgacatttttagctttaagccacactaacgataacaacttaattttatcaagcaatctaggagtctcggt 20795382  T
Q  121 aatcacatttttaaacaaacgaatattacgctcattccaaatcacccaagatgtcagaagccataataaccgaagaaaagacctcctagctttgccgaaa 220  Q
     |  |||||||||||||||||| ||||||||||| ||||||||| |||||  |||| |||||| | |||| ||||||| || | |||||||||| | |||    
T  20795383 tacaacatttttaaacaaacgattattacgctcactccaaatcatccaagtagtcaaaagccagattaactgaagaaacgatcgcctagctttggcaaaa 20795482  T
Q  221 cctgacaaactagtgaactgcacaaaatgatgagaaatagtgttggagtcaaccccaacacaacctattcagtaccacacctgctcccataaaactgcaa 320  Q
    |||||||||| |||||||||||| || |||| ||||||| |||||||||| ||||| ||||||||||| |||  |||||  |||||||||||| | ||||    
T  20795483 cctgacaaacaagtgaactgcactaagtgattagaaataatgttggagtcgacccccacacaacctatccagagccacaattgctcccataaacccgcaa 20795582  T
Q  321 aa 322  Q
    ||    
T  20795583 aa 20795584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 21 - 322
Target Start/End: Complemental strand, 49265489 - 49265188
Alignment:
Q  21 accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaatctaggaacctcggt 120  Q
    |||||||||| |||||||||||||| ||||||||||||||||| || |||||| |||| ||||||||||||||||||||||| ||||||||| |||||||    
T  49265489 accaccacatatgagttccaaaaacaaaagtggcatttttagctttaagccacactaatgataacaacttaattttatcaagcaatctaggagcctcggt 49265390  T
Q  121 aatcacatttttaaacaaacgaatattacgctcattccaaatcacccaagatgtcagaagccataataaccgaagaaaagacctcctagctttgccgaaa 220  Q
     |  |||||||||||||||||| | |||| |||| ||||||||| |||||  |||| |||||||| |||| ||||||| || | |||||||||| | |||    
T  49265389 tacaacatttttaaacaaacgattgttacactcactccaaatcatccaagtagtcaaaagccatattaactgaagaaacgatcgcctagctttggcaaaa 49265290  T
Q  221 cctgacaaactagtgaactgcacaaaatgatgagaaatagtgttggagtcaaccccaacacaacctattcagtaccacacctgctcccataaaactgcaa 320  Q
    ||||| |||| |||||| ||||| || |||||||||||| |||||||||| ||||| ||||||||||| |||  || ||  |||||||||||| | ||||    
T  49265289 cctgataaacaagtgaattgcacgaagtgatgagaaataatgttggagtcgacccccacacaacctatccagagccgcaattgctcccataaatccgcaa 49265190  T
Q  321 aa 322  Q
    ||    
T  49265189 aa 49265188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 22 - 288
Target Start/End: Original strand, 39429894 - 39430160
Alignment:
Q  22 ccaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaatctaggaacctcggta 121  Q
    ||||||||| |||||||||||||| ||||||||||||||||| || |||||| |||| |||||||| || |||||| |||| ||||||||| |||||||     
T  39429894 ccaccacatatgagttccaaaaacaaaagtggcatttttagctttaagccacactaacgataacaatttgattttaacaagcaatctaggagcctcggtt 39429993  T
Q  122 atcacatttttaaacaaacgaatattacgctcattccaaatcacccaagatgtcagaagccataataaccgaagaaaagacctcctagctttgccgaaac 221  Q
    |  |||||||||||||||||| ||||||||||| || ||||||||||||  |||| || ||| | |||| ||||||| || | |||||||||| | ||||    
T  39429994 acaacatttttaaacaaacgattattacgctcactctaaatcacccaagtagtcaaaaaccagattaactgaagaaacgatcgcctagctttggcaaaac 39430093  T
Q  222 ctgacaaactagtgaactgcacaaaatgatgagaaatagtgttggagtcaaccccaacacaacctat 288  Q
    |||| | ||  ||||||||||| || |||| ||||||| |||||||||| ||||| ||||| |||||    
T  39430094 ctgatagacaggtgaactgcacgaagtgattagaaataatgttggagtcgacccccacacagcctat 39430160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 137 - 322
Target Start/End: Original strand, 17827032 - 17827217
Alignment:
Q  137 aaacgaatattacgctcattccaaatcacccaagatgtcagaagccataataaccgaagaaaagacctcctagctttgccgaaacctgacaaactagtga 236  Q
    |||||| | ||||||||| |||||||||||||||| |||| |||||| | |||| ||| |||||||| |||| |||||   ||||||||||||| |||||    
T  17827032 aaacgattgttacgctcactccaaatcacccaagacgtcaaaagccagattaactgaataaaagaccgcctaactttgggaaaacctgacaaacaagtga 17827131  T
Q  237 actgcacaaaatgatgagaaatagtgttggagtcaaccccaacacaacctattcagtaccacacctgctcccataaaactgcaaaa 322  Q
    ||||||| || |||| ||||||| |||||||||| ||||| |||||||||||  ||  || ||| |||||||||||  ||||||||    
T  17827132 actgcacgaagtgattagaaataatgttggagtcgacccccacacaacctatctagagccgcacttgctcccataactctgcaaaa 17827217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 16874027 - 16873939
Alignment:
Q  12 ataggactt-accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatc 99  Q
    ||||||||| |||||||||| ||||| ||| |||  ||  |||| |||||||| ||||||||| |||| |||||||| |||||||||||    
T  16874027 ataggacttgaccaccacatatgagtaccataaataaacatggcttttttagctttcagccaccctaatgataacaatttaattttatc 16873939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 37530179 - 37530263
Alignment:
Q  21 accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatcaagtaa 105  Q
    ||||||||  ||||||||||||||| || || || |||||||| ||||||||  ||||||| | ||||||||  |||||||||||    
T  37530179 accaccactgctgagttccaaaaacaaaggtagcttttttagctttcagccaacctaaagacatcaacttaaccttatcaagtaa 37530263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 44929851 - 44929923
Alignment:
Q  21 accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaat 93  Q
    |||||||||||||||| |||||||| ||  || | ||| |||| ||||||||| ||||||||||| |||||||    
T  44929851 accaccacatctgagtaccaaaaacaaacatgacttttatagctttcagccacactaaagataacgacttaat 44929923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 16266 - 16355
Alignment:
Q  11 cataggactt-accaccacatctgagttccaaaaacgaaagtggcatttttagccttcagccacgctaaagataacaacttaattttatc 99  Q
    |||||||||| |||||||||||||||| ||| |||| ||  |||| |||||||| ||||||||| |||| |||||||| ||||| |||||    
T  16266 cataggacttgaccaccacatctgagtaccataaacaaacatggcttttttagctttcagccaccctaatgataacaatttaatcttatc 16355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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