View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10112_low_6 (Length: 396)
Name: NF10112_low_6
Description: NF10112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10112_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 218 - 376
Target Start/End: Complemental strand, 39789350 - 39789192
Alignment:
| Q |
218 |
cgtacaacttattaatcaatcgaaacaataacattatcttccaggggaaatacttgcattatatgcctaacttaccaaagctagtagctaggctaggcct |
317 |
Q |
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| T |
39789350 |
cgtacaacttattaatcaatcgaaacaataacattatcttccaggggaaatacttgcattatatgcctaacttaccaaagctagtagctaggctaggcct |
39789251 |
T |
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| Q |
318 |
agtaaatttgactattttttattagaaaatgaaattcgtgactatttatagtctattga |
376 |
Q |
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| T |
39789250 |
agtaaatttgactattttttattagaaaatgaaattcgtgactatttatagtctattga |
39789192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 39789549 - 39789390
Alignment:
| Q |
19 |
gttaacttacgtagctgcatatttcttctcttcggttctcacttctacgttaggtgttttggattgtgatgcatcacttggcagcttgtatgaaaactct |
118 |
Q |
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| T |
39789549 |
gttaacttacgtagctgcatatttcctctcttcggttctcacttctacgttaggtgttttggattgtgatgcatcacttggcagcttgtatgaaaactct |
39789450 |
T |
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| Q |
119 |
tcctaactttgaaaaacctcgttttcttcacttcacaaatatatgtattctacttgttcc |
178 |
Q |
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| T |
39789449 |
tcctaactttgaaaaacctcgttttcttcacttcacaaatatatgtattctacttgttcc |
39789390 |
T |
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