View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10112_low_8 (Length: 370)
Name: NF10112_low_8
Description: NF10112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10112_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 9221759 - 9222116
Alignment:
| Q |
1 |
ttgcataccagtctcatgaagggttccaagaagagcgatggctccataaacatatcaatattcctaaattagtcacaaaaatgtatgtcattaaactgta |
100 |
Q |
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| T |
9221759 |
ttgcataccagtctcatgaagggttccaagaagagcaatggctccataaacatatcaatattcctgaattaggcacaaaaatgtatgtcattaaactgta |
9221858 |
T |
|
| Q |
101 |
agaaatcttgattagttgaaaaaccacaatgatttaaattgttgttttcatccttctattttgggaaaaccgccgttttgctccccctatttctaatcat |
200 |
Q |
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| T |
9221859 |
agcaatcttgattagttgaaaaaccacaatgatttaaat-gttgttttcatccttctattttgggaaaaccgccgttttgctccccctatttctaatcat |
9221957 |
T |
|
| Q |
201 |
aaaattttggtccccc-tttcatttgatgacgtactaataaattgttcactttaaaccttttgtatcatttcaattgatcttcttttgaccatgtatgtt |
299 |
Q |
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| T |
9221958 |
agaattttggtcccccgtttcatttgatgacgtactaataaattgttcattctaaaccttttgtatcatttcaattgatcttcttttgactatgtatgtt |
9222057 |
T |
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| Q |
300 |
tggtcacgacttagtttaagcctctacttttgacaactcaacaattaagttttcgtttc |
358 |
Q |
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| T |
9222058 |
tggtcacgacttagtttaagcctctacttttgacgactcaacaattaagttttcgtttc |
9222116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 286
Target Start/End: Complemental strand, 10565644 - 10565594
Alignment:
| Q |
236 |
aataaattgttcactttaaaccttttgtatcatttcaattgatcttctttt |
286 |
Q |
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| T |
10565644 |
aataaattgttcactctcaacctcttgtatcatttcaattgatcttctttt |
10565594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 301
Target Start/End: Complemental strand, 33333904 - 33333839
Alignment:
| Q |
236 |
aataaattgttcactttaaaccttttgtatcatttcaattgatcttcttttgaccatgtatgtttg |
301 |
Q |
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| T |
33333904 |
aataaattgtttacttccaacctcttgtatcatttcaattgatcttcttttaactatgtatatttg |
33333839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 33971160 - 33971208
Alignment:
| Q |
240 |
aattgttcactttaaaccttttgtatcatttcaattgatcttcttttga |
288 |
Q |
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| T |
33971160 |
aattgttcactctaatccccttttatcatttcaattgatcttcttttga |
33971208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 286
Target Start/End: Original strand, 50815184 - 50815234
Alignment:
| Q |
236 |
aataaattgttcactttaaaccttttgtatcatttcaattgatcttctttt |
286 |
Q |
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||||||||||||| ||| |||||||| |||||||| ||||||||||||||| |
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| T |
50815184 |
aataaattgttcattttcaaccttttatatcattttaattgatcttctttt |
50815234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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