View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10112_low_9 (Length: 357)
Name: NF10112_low_9
Description: NF10112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10112_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 127 - 348
Target Start/End: Complemental strand, 5023257 - 5023036
Alignment:
| Q |
127 |
agagtaaaattcaatcaacgttaagcacaagagtgtggaaagaaagtatcattgtaggaccatagcccttgatactgttcaaacaacattgcaatagaat |
226 |
Q |
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| T |
5023257 |
agagtaaaattcaatcaacgttaagcacaagagtgtggaaagaaagtatcattgtaggaccatagccctttctactgttcaaacaacattgcaatagcat |
5023158 |
T |
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| Q |
227 |
tagattatgttcatttcacaacctacatgaaactaaaacacnnnnnnnnngtctataatgaatattgtaatagtttcaatatatatatgttggctgatgg |
326 |
Q |
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| T |
5023157 |
tagattatgttcatttcacaacctacatgaacctaaaacacaaaaaaaaagtctataatgaatattgtaatagtttcaatatatatatgttggctgatgg |
5023058 |
T |
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| Q |
327 |
agatggaagtctactgtcctat |
348 |
Q |
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|||||||||||||||||||||| |
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| T |
5023057 |
agatggaagtctactgtcctat |
5023036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 5023350 - 5023251
Alignment:
| Q |
1 |
tctctcaaatcccttcccaactaaagaaagcatccattcattccacttcattttttctgaagtcctccccttctaaactccaaacagaccttaagagtaa |
100 |
Q |
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||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5023350 |
tctctgaaatcccttcccaactaaagaaagcattcattcattccacttcattttttctgaagtcctccccttctaaactccaaacagaccttcagagtaa |
5023251 |
T |
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