View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10113_high_1 (Length: 955)
Name: NF10113_high_1
Description: NF10113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10113_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 468; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 12 - 498
Target Start/End: Original strand, 40668028 - 40668515
Alignment:
| Q |
12 |
agatggacatcaaatagctgcaaaagtaaggaaagaagaaagtgcacaagggttttctgaatttcattctgaggtttatgtcttgagttttgctagacac |
111 |
Q |
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| T |
40668028 |
agatggacaacaaatagctgcaaaagtaaggaaagaagaaagtgcacaagggttttctgaatttcattctgaggtttatgtcttgagttttgctagacac |
40668127 |
T |
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| Q |
112 |
aagaatatagtgatgctgttggggtattgttgcaaagaaaataaaaatattctcatatatgaatatatttgcaataagtctcttcattggcatttatttg |
211 |
Q |
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| T |
40668128 |
aagaatatagtgatgctgttggggtattgttgcaaagaaaataaaaatattctcatatatgaatatatttgcaataagtctcttcattggcatttatttg |
40668227 |
T |
|
| Q |
212 |
gtaagtgccttatgttgttttatcttatcttcaagtctaac-aagtatactttaaaggcactctaaggtttttattttgttgtagaaaatagtgaagcag |
310 |
Q |
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| T |
40668228 |
gtaagtgccttatgttgttttatcttatcttcaagtctaacaaagtatactttaaaggcactctaagatttttattttgttgtagaaaatagtgaagcag |
40668327 |
T |
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| Q |
311 |
ttcttgattggtctcaaagatatggtattgcacttgggattgcaaagggattgcgttttctacatgaggaatgtcgaggtggtcctattattcataggga |
410 |
Q |
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| T |
40668328 |
ttcttgattggtctcaaagatatggtattgcacttgggattgcaaagggattgcgttttctacatgaggaatgtcgaggtggtcctattattcataggga |
40668427 |
T |
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| Q |
411 |
tatgagaccaagcaatatacttctcactcatgattttgttcccatggtaataaagtagtaaagtatatgtgtatgctgcttcattcaa |
498 |
Q |
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| T |
40668428 |
tatgagaccaagcaatatacttctcactcatgattttgttcccatggtaataaagtagtaaagtatatgtgtatgcttcttcattcaa |
40668515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 490 - 941
Target Start/End: Original strand, 40668532 - 40668974
Alignment:
| Q |
490 |
ttcattcaatgttttccttagatatataatataattggtactaggcttcatttacgaaactagatcagttaatgtacaaaaataagtatgaacaaattga |
589 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40668532 |
ttcattcaatgttttccttagatatataatataa--ggtactaggcttcatttacgaaactagatcagttaatgtacagaaataagtatgaacaaattga |
40668629 |
T |
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| Q |
590 |
taaaggaggattaggagagaactaaaacaaatactatatagtaggtgaatggttgattaactgaaatatatatgatttataatgcagctagctgactttg |
689 |
Q |
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| T |
40668630 |
taaaggaggattaggagagaactaaaacaaatactatatagtaggtgaatggttgattaaatttg-tctaaataatgcatggtgcagctagctgactttg |
40668728 |
T |
|
| Q |
690 |
gccttgccaaatggaatactggtgatgattctcatcatcatcaaacaaggataatgggaacatttgggtgagaatttgtttgttcaagcttttcattatt |
789 |
Q |
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| T |
40668729 |
gccttgccaaatggaatactggtgatgattctcat------caaacaaggataatgggaacatttgggtgagaatttgtttgttcaagcttttcattatt |
40668822 |
T |
|
| Q |
790 |
acaaacaacaaatacaaatggtctgattatacccattaatgttgttgttattgtttatgtagatatcttgctcctgagtatgctgaagatggtattgttt |
889 |
Q |
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| T |
40668823 |
acaaacaacaaatacaaatggtctgattatacccattaatgttgttgttattgtttatgtagatatcttgctcctgagtatgctgaagatggtattgttt |
40668922 |
T |
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| Q |
890 |
ctgaagggacagatgtgtattcttatggtgttacaatgttacagttgatatc |
941 |
Q |
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| T |
40668923 |
ctgaagggacagatgtgtattcttatggtgttactatgttacagttgatatc |
40668974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 2e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 77 - 211
Target Start/End: Original strand, 4301683 - 4301817
Alignment:
| Q |
77 |
attctgaggtttatgtcttgagttttgctagacacaagaatatagtgatgctgttggggtattgttgcaaagaaaataaaaatattctcatatatgaata |
176 |
Q |
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||||||| || ||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
4301683 |
attctgaagtgtatgtcttgagttttgctagatacaagaatatagtgatgttgttggggtactgttgcaaagaaaataaaaatattatcatatatgaatt |
4301782 |
T |
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| Q |
177 |
tatttgcaataagtctcttcattggcatttatttg |
211 |
Q |
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| T |
4301783 |
tatttgcgataagtctcttcattggtatttatttg |
4301817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 4301817 - 4301874
Alignment:
| Q |
295 |
gaaaatagtgaagcagttcttgattggtctcaaagatatggtattgcacttgggattg |
352 |
Q |
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||||||||||||| |||| |||||||| ||| |||||||||||||||||||||||||| |
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| T |
4301817 |
gaaaatagtgaagtagttattgattggcctcgaagatatggtattgcacttgggattg |
4301874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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