View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10113_high_15 (Length: 230)
Name: NF10113_high_15
Description: NF10113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10113_high_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 13339962 - 13339769
Alignment:
| Q |
19 |
ttcatgttgtcagtggcagcaatttttcatgatctggagtacaatattatattactgccaatctggcacagttattggtgctcctaattaatgttccctg |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13339962 |
ttcatgtcgtcagtggcagcaatttttcatgatctggagtacaatattatattactgccaatctggcacagttattggtgctcctaattaatgttccctg |
13339863 |
T |
|
| Q |
119 |
ccctatctacgatcaatggttttatttacatcctgtt-nnnnnnnntctagtaagttttattacatgaaaggttgttatagccaccgcacaccatgc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13339862 |
ccctatctacgatcaatggttttatttacatcttgttaaaaaaaaatc---taagttttattacatgaaaggttgttatagccaccgcacaccatgc |
13339769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University