View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10113_high_2 (Length: 550)

Name: NF10113_high_2
Description: NF10113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10113_high_2
NF10113_high_2
[»] chr7 (30 HSPs)
chr7 (131-542)||(32523918-32524337)
chr7 (7-131)||(32520568-32520692)
chr7 (131-225)||(29330008-29330102)
chr7 (131-225)||(38247409-38247503)
chr7 (131-310)||(7252982-7253167)
chr7 (131-225)||(41793461-41793555)
chr7 (131-288)||(35582736-35582899)
chr7 (131-310)||(38000906-38001090)
chr7 (131-225)||(114057-114151)
chr7 (131-310)||(43744973-43745158)
chr7 (136-225)||(15030317-15030406)
chr7 (131-223)||(26794096-26794188)
chr7 (131-190)||(34847096-34847155)
chr7 (131-190)||(36311371-36311430)
chr7 (131-190)||(44866844-44866903)
chr7 (131-195)||(35795257-35795321)
chr7 (131-190)||(46255662-46255721)
chr7 (131-180)||(14815928-14815977)
chr7 (131-180)||(15262923-15262972)
chr7 (131-190)||(33951740-33951800)
chr7 (131-190)||(43458950-43459009)
chr7 (131-190)||(25528381-25528440)
chr7 (253-310)||(15030424-15030481)
chr7 (131-190)||(8166531-8166590)
chr7 (50-130)||(26525537-26525614)
chr7 (131-196)||(24686475-24686540)
chr7 (50-95)||(27215417-27215462)
chr7 (152-216)||(35965245-35965309)
chr7 (249-288)||(41793395-41793434)
chr7 (266-310)||(29330131-29330175)
[»] chr1 (27 HSPs)
chr1 (332-511)||(19769824-19770011)
chr1 (131-310)||(30233435-30233621)
chr1 (131-288)||(12523416-12523569)
chr1 (131-310)||(10310244-10310430)
chr1 (131-310)||(22333547-22333718)
chr1 (131-310)||(7197717-7197902)
chr1 (131-225)||(29946034-29946128)
chr1 (131-200)||(39600518-39600587)
chr1 (130-190)||(48963606-48963666)
chr1 (131-190)||(22859476-22859535)
chr1 (131-190)||(38861497-38861556)
chr1 (131-190)||(41899559-41899618)
chr1 (133-190)||(12699827-12699884)
chr1 (131-190)||(3516866-3516925)
chr1 (131-190)||(29962202-29962261)
chr1 (131-190)||(33802136-33802195)
chr1 (131-190)||(41087222-41087281)
chr1 (131-190)||(41091990-41092049)
chr1 (131-190)||(44754680-44754739)
chr1 (131-190)||(41724284-41724343)
chr1 (131-190)||(49852532-49852591)
chr1 (131-190)||(50261269-50261328)
chr1 (131-190)||(12529180-12529239)
chr1 (132-190)||(14586610-14586668)
chr1 (131-196)||(43253455-43253520)
chr1 (131-181)||(27217614-27217664)
chr1 (249-310)||(39600450-39600511)
[»] chr4 (44 HSPs)
chr4 (131-310)||(47984204-47984390)
chr4 (131-288)||(13752973-13753136)
chr4 (131-310)||(51889847-51890033)
chr4 (131-222)||(53513064-53513155)
chr4 (131-225)||(4353360-4353454)
chr4 (131-310)||(38988371-38988556)
chr4 (131-225)||(47605167-47605261)
chr4 (131-225)||(45657197-45657291)
chr4 (131-310)||(53271530-53271715)
chr4 (136-225)||(44109349-44109438)
chr4 (131-215)||(40690691-40690775)
chr4 (131-225)||(52917182-52917275)
chr4 (131-196)||(55609798-55609863)
chr4 (131-190)||(1603588-1603647)
chr4 (131-190)||(4189160-4189219)
chr4 (131-190)||(6964257-6964316)
chr4 (131-190)||(9035372-9035431)
chr4 (131-190)||(31093904-31093963)
chr4 (131-190)||(38217557-38217616)
chr4 (131-190)||(45229874-45229933)
chr4 (131-190)||(49375121-49375180)
chr4 (131-190)||(52502213-52502272)
chr4 (131-195)||(5419628-5419692)
chr4 (131-187)||(30004365-30004421)
chr4 (135-190)||(167806-167861)
chr4 (131-190)||(4048941-4049000)
chr4 (131-190)||(15542094-15542153)
chr4 (131-190)||(28780059-28780118)
chr4 (131-190)||(35319151-35319210)
chr4 (131-190)||(35159525-35159584)
chr4 (131-190)||(40728834-40728893)
chr4 (131-190)||(45462993-45463052)
chr4 (131-181)||(16024680-16024730)
chr4 (133-190)||(51539419-51539475)
chr4 (131-190)||(38550546-38550605)
chr4 (131-190)||(56462942-56463001)
chr4 (131-168)||(28310158-28310195)
chr4 (249-310)||(53512974-53513035)
chr4 (152-288)||(18559685-18559828)
chr4 (137-181)||(56318594-56318638)
chr4 (131-190)||(52416206-52416264)
chr4 (253-310)||(47605059-47605116)
chr4 (152-190)||(2013023-2013061)
chr4 (250-310)||(40690795-40690855)
[»] chr3 (31 HSPs)
chr3 (131-310)||(48065599-48065785)
chr3 (131-225)||(49324988-49325082)
chr3 (131-310)||(47372446-47372632)
chr3 (133-288)||(21448327-21448489)
chr3 (131-225)||(8484110-8484203)
chr3 (131-310)||(44205128-44205313)
chr3 (131-225)||(3939145-3939239)
chr3 (131-216)||(30390482-30390567)
chr3 (134-216)||(9128417-9128499)
chr3 (134-216)||(9136524-9136606)
chr3 (134-225)||(41972442-41972533)
chr3 (131-196)||(16479005-16479070)
chr3 (131-190)||(39353913-39353972)
chr3 (131-190)||(47013035-47013094)
chr3 (131-190)||(47647722-47647781)
chr3 (131-190)||(49165376-49165435)
chr3 (131-187)||(53816743-53816799)
chr3 (131-190)||(228183-228242)
chr3 (11-81)||(53226199-53226269)
chr3 (131-190)||(41193033-41193092)
chr3 (132-190)||(36402096-36402154)
chr3 (140-190)||(39587376-39587426)
chr3 (131-190)||(26501472-26501530)
chr3 (133-190)||(6937231-6937286)
chr3 (131-187)||(31764469-31764525)
chr3 (131-190)||(32530590-32530649)
chr3 (249-310)||(3939273-3939334)
chr3 (250-310)||(8484237-8484297)
chr3 (249-310)||(30390382-30390443)
chr3 (250-310)||(9128324-9128384)
chr3 (250-310)||(9136431-9136491)
[»] chr5 (26 HSPs)
chr5 (133-310)||(24853582-24853767)
chr5 (131-310)||(22192503-22192689)
chr5 (131-310)||(1708979-1709163)
chr5 (133-310)||(5336464-5336647)
chr5 (131-225)||(6430847-6430941)
chr5 (131-190)||(8198187-8198246)
chr5 (131-190)||(8735500-8735559)
chr5 (131-190)||(12785968-12786027)
chr5 (131-190)||(16512863-16512922)
chr5 (131-190)||(25976409-25976468)
chr5 (134-195)||(8298526-8298587)
chr5 (133-190)||(38678738-38678795)
chr5 (131-190)||(3557428-3557487)
chr5 (131-190)||(12724485-12724544)
chr5 (131-190)||(18809776-18809835)
chr5 (131-190)||(26279861-26279920)
chr5 (131-190)||(37884225-37884284)
chr5 (133-190)||(37029572-37029629)
chr5 (131-190)||(20336765-20336824)
chr5 (131-190)||(27115109-27115168)
chr5 (134-190)||(11719216-11719272)
chr5 (131-190)||(17504433-17504492)
chr5 (131-210)||(31469903-31469977)
chr5 (133-190)||(27950877-27950934)
chr5 (148-190)||(37013579-37013621)
chr5 (51-95)||(18845326-18845370)
[»] chr8 (26 HSPs)
chr8 (131-222)||(42191531-42191622)
chr8 (131-225)||(24834944-24835038)
chr8 (9-94)||(8240655-8240740)
chr8 (131-190)||(8239260-8239319)
chr8 (131-190)||(28249549-28249608)
chr8 (131-190)||(39259575-39259634)
chr8 (131-190)||(39317891-39317950)
chr8 (131-190)||(43097799-43097858)
chr8 (131-190)||(6348120-6348179)
chr8 (135-190)||(11076991-11077046)
chr8 (131-190)||(13545527-13545586)
chr8 (131-190)||(13678887-13678946)
chr8 (131-190)||(35683289-35683348)
chr8 (131-190)||(40104521-40104581)
chr8 (131-187)||(42131197-42131253)
chr8 (131-190)||(23143400-23143459)
chr8 (131-190)||(31700301-31700360)
chr8 (131-190)||(225474-225533)
chr8 (131-190)||(701887-701946)
chr8 (131-190)||(739097-739156)
chr8 (131-190)||(862992-863051)
chr8 (135-190)||(20092682-20092737)
chr8 (131-190)||(32338636-32338695)
chr8 (131-190)||(37099128-37099187)
chr8 (131-190)||(38224692-38224751)
chr8 (134-190)||(4257952-4258008)
[»] chr2 (22 HSPs)
chr2 (131-310)||(43334350-43334535)
chr2 (131-310)||(5462067-5462235)
chr2 (131-210)||(15111007-15111086)
chr2 (131-190)||(1209188-1209247)
chr2 (131-190)||(6404920-6404979)
chr2 (131-190)||(45235031-45235090)
chr2 (131-210)||(5935531-5935610)
chr2 (131-190)||(13279481-13279540)
chr2 (131-190)||(17136975-17137034)
chr2 (131-190)||(31993351-31993410)
chr2 (131-226)||(34950796-34950891)
chr2 (131-190)||(45117814-45117873)
chr2 (131-190)||(15912516-15912575)
chr2 (131-190)||(38209137-38209196)
chr2 (131-190)||(44760839-44760898)
chr2 (131-190)||(1115909-1115968)
chr2 (131-190)||(30490042-30490100)
chr2 (131-190)||(38702880-38702939)
chr2 (131-181)||(7940816-7940866)
chr2 (131-171)||(16415296-16415336)
chr2 (249-310)||(5935641-5935702)
chr2 (131-196)||(31715168-31715233)
[»] chr6 (18 HSPs)
chr6 (131-310)||(29437186-29437371)
chr6 (131-215)||(18574711-18574795)
chr6 (131-215)||(18584592-18584676)
chr6 (131-225)||(481470-481564)
chr6 (131-225)||(34951182-34951276)
chr6 (9-94)||(30710899-30710984)
chr6 (9-130)||(14503697-14503816)
chr6 (131-190)||(11975777-11975836)
chr6 (131-190)||(31319325-31319384)
chr6 (131-190)||(31722176-31722235)
chr6 (131-190)||(34540704-34540763)
chr6 (131-187)||(304565-304621)
chr6 (131-190)||(16396148-16396207)
chr6 (131-190)||(9304273-9304332)
chr6 (131-190)||(31272061-31272120)
chr6 (131-190)||(439858-439917)
chr6 (53-103)||(17304352-17304402)
chr6 (249-310)||(481379-481440)
[»] scaffold0168 (1 HSPs)
scaffold0168 (131-204)||(17776-17849)
[»] scaffold0121 (1 HSPs)
scaffold0121 (131-190)||(46703-46762)
[»] scaffold0064 (1 HSPs)
scaffold0064 (133-171)||(61085-61123)


Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 131 - 542
Target Start/End: Original strand, 32523918 - 32524337
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggct-ctggt 229  Q
    |||||||||||||||||||| ||||||||||||||| |||| |||| |||| |||||||||||||||||||||||||||||||||| |||| |  | |||    
T  32523918 acattacaataattttcaagttttttaagcttattatataagatcccaaatctatttctactcttaacttattacataagcaataccggtgaccaccggt 32524017  T
Q  230 gtagaggaaagannnnnnnaggaaagaagatggcgaggaagaagaaaccaatgttgccttacagaacatactagtagctttaaattttttgaacaggtga 329  Q
    |  |||||||||       |||||||||||||||| ||||||||||| ||||||||||| | || |||||| ||||||||||||||||||||||| ||||    
T  32524018 ggggaggaaagagggggg-aggaaagaagatggcggggaagaagaaatcaatgttgcctgataggacataccagtagctttaaattttttgaacaagtga 32524116  T
Q  330 atgcagatagagaaagatagaggtagatgtaatgttgttctatggtttgttctgc--------aagaggtaatcgcggagcatctggattcttcaatgcc 421  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| |        | |||||||||||||||||| |||||||||| |||||    
T  32524117 atgcagatagagaaaggtagaggtagatgtaatgttgttctatggtttgttcttctccaatggaggaggtaatcgcggagcatttggattcttccatgcc 32524216  T
Q  422 tcgatatagcattacggcgacgattcaatttcaaacgttgaggtgatgcttagatctaattctcttatgatatcagattattcactatgagaaatgattc 521  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  32524217 tcgagatagcattacggcgacgattcaattttaaacgttgaggtgatgcttagatctaattctcttatgatatcatattattcattatgagaaatgattc 32524316  T
Q  522 atacttagtgctttctgtgct 542  Q
    |||||||||||||| ||||||    
T  32524317 atacttagtgctttatgtgct 32524337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 32520568 - 32520692
Alignment:
Q  7 aaatgattacacatgccaagcaattcacaatatatgacttagcctaaatttaataagaatgaaaagcgctcgcttatgtttgtgttgtgcacttactgct 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32520568 aaatgattacacatgccaagcaattcacaatatatgacttagcctaaatttaataagaatgaaaagcgcccgcttatgtttgtgttgtgcacttactgct 32520667  T
Q  107 gggagaaaaaagaatgaaaagggca 131  Q
    |||||||||||||||||||||||||    
T  32520668 gggagaaaaaagaatgaaaagggca 32520692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 131 - 225
Target Start/End: Original strand, 29330008 - 29330102
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggctc 225  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  29330008 acattacaataattttcaagctttttaagcttattacataagatcctaaatatatttctactcttaacttattacataagcaataccggtggctc 29330102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 131 - 225
Target Start/End: Original strand, 38247409 - 38247503
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggctc 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  38247409 acattacaataattttcaagctttttaagcttattacataatatcataaatctatttctactcttaacttattacataagcaataccggtggctc 38247503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 131 - 310
Target Start/End: Original strand, 7252982 - 7253167
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggctctgg-- 228  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||| ||||||||  |      
T  7252982 acattacaataattttcaagctttttaagcttattacataagatcctaaatctatttatactcttaacttattacataagcaataccggtggctccagcc 7253081  T
Q  229 -----tgtagaggaaagannnnnnnaggaaagaagatggcgaggaagaagaaaccaatgttgccttacagaacatactagtagcttt 310  Q
         || ||||||||||       ||||||||||||| || ||||||||||||||||| ||||| | || |||||| |||||||||    
T  7253082 atcgatggagaggaaagagggggg-aggaaagaagatgtcggggaagaagaaaccaatgctgcctgataggacataccagtagcttt 7253167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 131 - 225
Target Start/End: Complemental strand, 41793555 - 41793461
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggctc 225  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41793555 acattacaataattttcaagctttttaagtttattacataagatcataaatctatttctactcttaacttattacataagcaatactggtggctc 41793461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 131 - 288
Target Start/End: Original strand, 35582736 - 35582899
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggct------ 224  Q
    ||||||||||||||||||||||||||||| ||||||||||| || |||||| ||||||||||||||||| |||||||||||||||| |||||||          
T  35582736 acattacaataattttcaagctttttaagtttattacataagatactaaatctatttctactcttaactcattacataagcaataccggtggctccagcc 35582835  T
Q  225 -ctggtgtagaggaaagannnnnnnaggaaagaagatggcgaggaagaagaaaccaatgttgcct 288  Q
     | |||| ||||||||||       |||||||||||||||| ||||||||||||||||| |||||    
T  35582836 accggtggagaggaaaga-ggggggaggaaagaagatggcggggaagaagaaaccaatgctgcct 35582899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 131 - 310
Target Start/End: Complemental strand, 38001090 - 38000906
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggct------ 224  Q
    |||||||||||||||  |||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||| | |||||          
T  38001090 acattacaataattt--aagctttttaagcttattacataagatcctaaatctatttctactcttaccttattacataagcaataccgatggctccagcc 38000993  T
Q  225 -ctggtgtagaggaaagannnnnnnaggaaagaagatggcgaggaagaagaaaccaatgttgccttacagaacatactagtagcttt 310  Q
     | |||| ||||||||||       |||||||||||||||| |||||||| |||||||| ||||| | || |||||| |||||||||    
T  38000992 accggtggagaggaaagagagggggaggaaagaagatggcggggaagaaggaaccaatgctgcctgataggacataccagtagcttt 38000906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 131 - 225
Target Start/End: Complemental strand, 114151 - 114057
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggctc 225  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||  ||||||||||||||||| |||||||||||||||| |||||||    
T  114151 acattacaataattttcaagctttttaagcttattatataagatcctaaatcaatttctactcttaactttttacataagcaatactagtggctc 114057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 131 - 310
Target Start/End: Original strand, 43744973 - 43745158
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggctctgg-- 228  Q
    |||||||||||||||| |||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| | ||||||  |      
T  43744973 acattacaataatttttaagctttttaagattattacataagatcctaaatctatttctactcttaacttattacataagcaataccgatggctccagcc 43745072  T
Q  229 -----tgtagaggaaagannnnnnnaggaaagaagatggcgaggaagaagaaaccaatgttgccttacagaacatactagtagcttt 310  Q
         || ||||||||||       ||||||||| |||||| ||||||||||||||||||||||| | |  |||||| |||||||||    
T  43745073 acctgtggagaggaaagagggggg-aggaaagaatatggcggggaagaagaaaccaatgttgcctgatatgacataccagtagcttt 43745158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 136 - 225
Target Start/End: Original strand, 15030317 - 15030406
Alignment:
Q  136 acaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggctc 225  Q
    |||||||||||||| ||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  15030317 acaataattttcaacctttttaagcttattacataagatgctaaatctatttctactcttaacttattacataagcaataccggtggctc 15030406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 131 - 223
Target Start/End: Complemental strand, 26794188 - 26794096
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggc 223  Q
    ||||||||||||||||||||||||| || |||||||||||| || |||||| |||||||||||||||||||||||||||||||||| ||||||    
T  26794188 acattacaataattttcaagcttttgaatcttattacataagatgctaaatctatttctactcttaacttattacataagcaataccggtggc 26794096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 34847096 - 34847155
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  34847096 acattacaataattttcaagctttttaaggttattacataagatcctaaatttatttcta 34847155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 36311371 - 36311430
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  36311371 acattacaataattttcaagctttttaagcttattacataagatcctaaatctatttcta 36311430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 44866903 - 44866844
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  44866903 acattacaataattttcaagctttttaagcttattacataagatcctaaatctatttcta 44866844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 131 - 195
Target Start/End: Complemental strand, 35795321 - 35795257
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactctt 195  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||    
T  35795321 acattacaaaaattttcaagctttttaagcttattacataagatcctaaatctatttctaatctt 35795257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 46255721 - 46255662
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||    
T  46255721 acattacaataattttcaagttttttaagcttattacataagatcctaaatctatttcta 46255662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 14815928 - 14815977
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaa 180  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14815928 acattacaataattttcaagctttttaagcttattacataagatcctaaa 14815977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 15262923 - 15262972
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaa 180  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  15262923 acattacaataattttcaagctttttaagcttattacataagatcctaaa 15262972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 33951800 - 33951740
Alignment:
Q  131 acattacaataattttcaagcttttt-aagcttattacataatatcctaaatttatttcta 190  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||    
T  33951800 acattacaataattttcaagcttttttaagcttattacataagatcctaaatctatttcta 33951740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 43459009 - 43458950
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||||||||||||||||||||||||| |||| ||||||| ||||||||| ||||||||    
T  43459009 acattacaataattttcaagctttttaaacttactacataagatcctaaatctatttcta 43458950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 25528381 - 25528440
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||| |||||||| |||||||||||| ||||| ||| ||||||||    
T  25528381 acattacaataattttcaaactttttaaacttattacataagatcctcaatctatttcta 25528440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 15030424 - 15030481
Alignment:
Q  253 aagaagatggcgaggaagaagaaaccaatgttgccttacagaacatactagtagcttt 310  Q
    |||||||||||||||||||||||||||||| ||||| | || |||||| |||||||||    
T  15030424 aagaagatggcgaggaagaagaaaccaatgctgcctgataggacataccagtagcttt 15030481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 8166590 - 8166531
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||| || ||| |||||||||||||||||||| | ||||||| ||||||||    
T  8166590 acattacaataatgttgaagttttttaagcttattacataagaacctaaatctatttcta 8166531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 26525614 - 26525537
Alignment:
Q  50 ctaaatttaataagaatgaaaagcgctcgcttatgtttgtgttgtgcacttactgctgggagaaaaaagaatgaaaagggc 130  Q
    ||||||||||||| ||||||||| ||| ||||||||||||| ||||| ||   ||||| |||||| || ||||||||||||    
T  26525614 ctaaatttaataaaaatgaaaagtgcttgcttatgtttgtggtgtgccct---tgctgagagaaagaacaatgaaaagggc 26525537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 131 - 196
Target Start/End: Original strand, 24686475 - 24686540
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactctta 196  Q
    ||||||||||||| || ||||||||||||||| |||||||| | ||||||  |||||||| |||||    
T  24686475 acattacaataatgttgaagctttttaagctttttacataagaacctaaaactatttctaatctta 24686540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 27215462 - 27215417
Alignment:
Q  50 ctaaatttaataagaatgaaaagcgctcgcttatgtttgtgttgtg 95  Q
    ||||||||||||||||||||||| ||| |||| |||||||||||||    
T  27215462 ctaaatttaataagaatgaaaagtgcttgcttctgtttgtgttgtg 27215417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 35965309 - 35965245
Alignment:
Q  152 tttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatac 216  Q
    |||| |||||| |||||||| |||| |||| |||||||| ||||| |||||||||||||| ||||    
T  35965309 ttttcaagctttttacataagatcccaaatctatttctaatcttatcttattacataagctatac 35965245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 288
Target Start/End: Complemental strand, 41793434 - 41793395
Alignment:
Q  249 aggaaagaagatggcgaggaagaagaaaccaatgttgcct 288  Q
    |||||||||||||||| ||||||||||||||||| |||||    
T  41793434 aggaaagaagatggcggggaagaagaaaccaatgctgcct 41793395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 29330131 - 29330175
Alignment:
Q  266 ggaagaagaaaccaatgttgccttacagaacatactagtagcttt 310  Q
    ||||||||||||||| | ||||| | |||||||||||||||||||    
T  29330131 ggaagaagaaaccaaagctgcctgatagaacatactagtagcttt 29330175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 332 - 511
Target Start/End: Original strand, 19769824 - 19770011
Alignment:
Q  332 gcagatagagaaagatagaggtagatgtaatgttgttctatggtttgttctgc--------aagaggtaatcgcggagcatctggattcttcaatgcctc 423  Q
    |||| ||||||||| ||||||| |||||||||||||||||||||||||||| |        | ||||||||||||||||||||||||||||| |||||||    
T  19769824 gcagctagagaaaggtagaggtggatgtaatgttgttctatggtttgttcttctccaatggaggaggtaatcgcggagcatctggattcttccatgcctc 19769923  T
Q  424 gatatagcattacggcgacgattcaatttcaaacgttgaggtgatgcttagatctaattctcttatgatatcagattattcactatga 511  Q
    || |||||||||||| | |||||||||||||||||||||||||||||||| ||||  ||||||||| |||||||||||||||||||||    
T  19769924 gagatagcattacggtggcgattcaatttcaaacgttgaggtgatgcttatatctgcttctcttatcatatcagattattcactatga 19770011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 131 - 310
Target Start/End: Complemental strand, 30233621 - 30233435
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggct------ 224  Q
    |||||||||||||||||||| ||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||          
T  30233621 acattacaataattttcaagttttttaatcttattacataagatcctaaatctatttctactcttaacttattacataagcaataccggtggctccagcc 30233522  T
Q  225 -ctggtgtagaggaaagannnnnnnaggaaagaagatggcgaggaagaagaaaccaatgttgccttacagaacatactagtagcttt 310  Q
     | |||| ||||||||||       |||||||||||||||| ||||||||||||||||| ||||| | || |||||| |||||||||    
T  30233521 accggtggagaggaaagagggggggaggaaagaagatggcggggaagaagaaaccaatgctgcctaataggacataccagtagcttt 30233435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 131 - 288
Target Start/End: Original strand, 12523416 - 12523569
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggctctggtg 230  Q
    ||||||||||||||||||||||||||||||||||||||||| ||  ||||| |||||||||||||||||||||||||||||||||| |||||||   |||    
T  12523416 acattacaataattttcaagctttttaagcttattacataagatgttaaatctatttctactcttaacttattacataagcaataccggtggct---gtg 12523512  T
Q  231 tagaggaaagannnnnnnaggaaagaagatggcgaggaagaagaaaccaatgttgcct 288  Q
     ||||||||||       |||||||||||||||| ||||||||||||||||| |||||    
T  12523513 gagaggaaaga-ggggggaggaaagaagatggcggggaagaagaaaccaatgctgcct 12523569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 131 - 310
Target Start/End: Original strand, 10310244 - 10310430
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggct------ 224  Q
    |||||||||||||||||| | |||||||||| ||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||          
T  10310244 acattacaataattttcatgatttttaagctcattacataagatgctaaatctatttctactcttaacttattacataagcaatactggtggctccagcc 10310343  T
Q  225 -ctggtgtagaggaaagannnnnnnaggaaagaagatggcgaggaagaagaaaccaatgttgccttacagaacatactagtagcttt 310  Q
     | |||| ||||||||||       | |||||||||||||||||||||||||||||||| ||||| | || |||||| |||||||||    
T  10310344 accggtggagaggaaagagggggggatgaaagaagatggcgaggaagaagaaaccaatgctgcctgataggacataccagtagcttt 10310430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 131 - 310
Target Start/End: Original strand, 22333547 - 22333718
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggctctggtg 230  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||| ||||||||  |      
T  22333547 acattacaataattttcaagctttttaagcttattacataagatgctaaatctatttctactcttaacttattacataagcaataccggtggctccagcc 22333646  T
Q  231 tagaggaaagannnnnnnaggaaagaagatggcgaggaagaagaaaccaatgttgccttacagaacatactagtagcttt 310  Q
       ||  ||||        ||||||||||||||| ||||||||||||||||||||||| | || |||||| |||||||||    
T  22333647 accagtgaaga--------ggaaagaagatggcggggaagaagaaaccaatgttgcctgataggacataccagtagcttt 22333718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 131 - 310
Target Start/End: Original strand, 7197717 - 7197902
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggct------ 224  Q
    |||||||||||||||| || ||||||||||||||||||||| || |||||| ||||||||||||||| ||||| ||||||||||||||||||||          
T  7197717 acattacaataatttttaaactttttaagcttattacataagatgctaaatctatttctactcttaagttattgcataagcaatactggtggctggagcc 7197816  T
Q  225 -ctggtgtagaggaaagannnnnnnaggaaagaagatggcgaggaagaagaaaccaatgttgccttacagaacatactagtagcttt 310  Q
     | |||| ||||||||||       |||||||||||| ||| ||||||||||||||||||||||| | || |||||| | |||||||    
T  7197817 accggtggagaggaaaga-ggggggaggaaagaagattgcggggaagaagaaaccaatgttgcctgataggacataccaatagcttt 7197902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 131 - 225
Target Start/End: Original strand, 29946034 - 29946128
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggctc 225  Q
    |||||||||||||||||||||||| ||| |||||||||||| || |||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  29946034 acattacaataattttcaagctttataaacttattacataagatgctaaatctatttctactcttaacttattacataagcaataccggtggctc 29946128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 131 - 200
Target Start/End: Complemental strand, 39600587 - 39600518
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaactt 200  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  39600587 acattacaataattttcaagctttttaagcttattacataagatcctaaatctatttctactcttaactt 39600518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 48963606 - 48963666
Alignment:
Q  130 cacattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  48963606 cacattacaataattttcaagctttttaagcttattacataagatcctaaatctatttcta 48963666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 22859535 - 22859476
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  22859535 acattacaataattttcaagctttttaagcttattacataagatcctaaatctatttcta 22859476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 38861556 - 38861497
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  38861556 acattacaataattttcaagctttttaagcttattacataagatcctaaatctatttcta 38861497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 41899559 - 41899618
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  41899559 acattacaataattttcaagctttttaagcttattacataagatcctaaatctatttcta 41899618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 12699827 - 12699884
Alignment:
Q  133 attacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  12699827 attacaataattttcaagctttttaagcttattacataagatcctaaatctatttcta 12699884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 3516866 - 3516925
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||    
T  3516866 acattacaataattttcaagctttttaagcttattacataagattctaaatctatttcta 3516925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 29962261 - 29962202
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||    
T  29962261 acattacaataattttcaagctttttaagcttattacataagatcctaaacctatttcta 29962202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 33802195 - 33802136
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  33802195 acattactataattttcaagctttttaagcttattacataagatcctaaatctatttcta 33802136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 41087281 - 41087222
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||    
T  41087281 acattacaataattttcaagctttttaagcttattacataagattctaaatctatttcta 41087222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 41092049 - 41091990
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||    
T  41092049 acattacaataattttcaagctttttaagcttattacataagattctaaatctatttcta 41091990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 44754680 - 44754739
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||    
T  44754680 acattacaataattttcaagctttttaagcttattacataagatcataaatctatttcta 44754739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 41724343 - 41724284
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||||||||||||||||| ||||||| |||||||||||| ||||||||| ||||||||    
T  41724343 acattacaataattttcaagatttttaaacttattacataagatcctaaatctatttcta 41724284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 49852591 - 49852532
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||||||||||||||||||  |||||||||||||||||| ||||||||| ||||||||    
T  49852591 acattacaataattttcaagcactttaagcttattacataagatcctaaatctatttcta 49852532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 50261269 - 50261328
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||||||||||||||||| |||||||||||||||||||| ||| ||||| ||||||||    
T  50261269 acattacaataattttcaagttttttaagcttattacataagatcataaatctatttcta 50261328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 12529239 - 12529180
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||||||||||||||||||||| ||||||||||| |||| ||| ||||| ||||||||    
T  12529239 acattacaataattttcaagctttgtaagcttattatataagatcttaaatctatttcta 12529180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 14586610 - 14586668
Alignment:
Q  132 cattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||| ||||||| |||||| ||||| ||||||||| ||||||||    
T  14586610 cattacaataattttcaagttttttaaacttattgcataagatcctaaatctatttcta 14586668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 131 - 196
Target Start/End: Complemental strand, 43253520 - 43253455
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactctta 196  Q
    ||||||||||||| || |||||||||||| ||||||||||| | ||||||  |||||||| |||||    
T  43253520 acattacaataatgttgaagctttttaagtttattacataaaaacctaaaactatttctaatctta 43253455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 27217664 - 27217614
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaat 181  Q
    ||||||||||||  || |||||||||||||||||||||||| | |||||||    
T  27217664 acattacaataacgttgaagctttttaagcttattacataagaacctaaat 27217614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 310
Target Start/End: Complemental strand, 39600511 - 39600450
Alignment:
Q  249 aggaaagaagatggcgaggaagaagaaaccaatgttgccttacagaacatactagtagcttt 310  Q
    |||||||||||||| | |||||||||||||||||||| || |  | |||||| |||||||||    
T  39600511 aggaaagaagatggtggggaagaagaaaccaatgttgtctgatgggacataccagtagcttt 39600450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 8e-47; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 131 - 310
Target Start/End: Original strand, 47984204 - 47984390
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggct------ 224  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||          
T  47984204 acattacaataattttcaagctttttaagcttattacataagatcctaaatctatttctactcttaacttattacataagcaataccggtggctcccgcc 47984303  T
Q  225 -ctggtgtagaggaaagannnnnnnaggaaagaagatggcgaggaagaagaaaccaatgttgccttacagaacatactagtagcttt 310  Q
     | | || ||||||||||       |||||||||||||||| ||||||||||||||||| ||||| | || ||||||||||||||||    
T  47984304 accgatggagaggaaagagtgagggaggaaagaagatggcggggaagaagaaaccaatgctgcctgataggacatactagtagcttt 47984390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 131 - 288
Target Start/End: Complemental strand, 13753136 - 13752973
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggct------ 224  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||| |||||||||||||||||||||||  |||||||          
T  13753136 acattacaataattttcaagctttttaagcttattacataagatgctaaatctatttctacacttaacttattacataagcaatatcggtggctccagcc 13753037  T
Q  225 -ctggtgtagaggaaagannnnnnnaggaaagaagatggcgaggaagaagaaaccaatgttgcct 288  Q
     | |||| ||||||||||       |||||||||||||||| ||||||||||||||||| |||||    
T  13753036 accggtggagaggaaaga-ggggggaggaaagaagatggcggggaagaagaaaccaatgctgcct 13752973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 131 - 310
Target Start/End: Complemental strand, 51890033 - 51889847
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggct------ 224  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||| |||||| ||| ||||||||||||||||||||||| |||||||          
T  51890033 acattacaataattttcaagctttttaagcttattacataagatgctaaatctatttccactattaacttattacataagcaataccggtggctccagcc 51889934  T
Q  225 -ctggtgtagaggaaagannnnnnnaggaaagaagatggcgaggaagaagaaaccaatgttgccttacagaacatactagtagcttt 310  Q
     | |||| ||||||||||       || ||||||||||||| ||||||||||||||||  ||||| |  | |||||| |||||||||    
T  51889933 accggtggagaggaaagagggggggagaaaagaagatggcggggaagaagaaaccaatactgcctgatgggacataccagtagcttt 51889847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 131 - 222
Target Start/End: Complemental strand, 53513155 - 53513064
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtgg 222  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||| |||||||||||||||||||||||| |||||    
T  53513155 acattacaataattttcaagctttttaagcttattacataagatgctaaatctatttctacccttaacttattacataagcaataccggtgg 53513064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 131 - 225
Target Start/End: Complemental strand, 4353454 - 4353360
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggctc 225  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||| ||||||||||||| | ||||||    
T  4353454 acattacaataattttcaagctttttaagcttattacataagatcctaaatctatttctactcttatcttataacataagcaataccgatggctc 4353360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 131 - 310
Target Start/End: Original strand, 38988371 - 38988556
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggctct---- 226  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| | |||| | |||||||        
T  38988371 acattacaataattttcaagttttttaagcttattacataagatcctaaatctatttctactcttaacttattacataaacgataccgatggctctagcc 38988470  T
Q  227 ---ggtgtagaggaaagannnnnnnaggaaagaagatggcgaggaagaagaaaccaatgttgccttacagaacatactagtagcttt 310  Q
       |||| ||||||||||       |||||||||||||| | |||||||||||||||||||| || | || |||||  |||||||||    
T  38988471 accggtggagaggaaaga-ggggggaggaaagaagatggaggggaagaagaaaccaatgttgtctgataggacatatcagtagcttt 38988556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 131 - 225
Target Start/End: Complemental strand, 47605261 - 47605167
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggctc 225  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||  |||||||||| ||||||||||||||||||||||| ||||||||    
T  47605261 acattacaataattttcaagctttttaagcttattacataagatgctaaaactatttctactattaacttattacataagcaataccggtggctc 47605167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 131 - 225
Target Start/End: Original strand, 45657197 - 45657291
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggctc 225  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||| |||||||||||||| ||||  |||||||    
T  45657197 acattacaataattttcaagctttttaagcttattacataagatcctaaatctatttctaatcttatcttattacataagctataccagtggctc 45657291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 131 - 310
Target Start/End: Complemental strand, 53271715 - 53271530
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggctc----- 225  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||| |||||||||||||| |||   |||||||         
T  53271715 acattacaataattttcaagctttttaagcttattacataagatcctaaatctatttctaatcttatcttattacataagctatatcagtggctccagcc 53271616  T
Q  226 --tggtgtagaggaaagannnnnnnaggaaagaagatggcgaggaagaagaaaccaatgttgccttacagaacatactagtagcttt 310  Q
      ||||| ||||||||||       ||||||||||| |||| ||||||||||| ||||||||||| |  | |||||| |||||||||    
T  53271615 attggtggagaggaaaga-ggggggaggaaagaagacggcggggaagaagaaatcaatgttgcctgatgggacataccagtagcttt 53271530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 136 - 225
Target Start/End: Complemental strand, 44109438 - 44109349
Alignment:
Q  136 acaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggctc 225  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||| | ||||||    
T  44109438 acaataattttcaagttttttaagcttattacataagatcctaaatctatttctaatcttaacttattacataagcaataccgatggctc 44109349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 40690691 - 40690775
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaata 215  Q
    |||||||||||||||||||| |||||||||||||||||||| || |||||| ||||| |||||||||||||||||||||||||||    
T  40690691 acattacaataattttcaagttttttaagcttattacataagatgctaaatctatttttactcttaacttattacataagcaata 40690775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 131 - 225
Target Start/End: Original strand, 52917182 - 52917275
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggctc 225  Q
    |||||||||||| |||||||||||| ||||||||| ||||| ||||||||| |||||||||| ||||||||||||||||| | ||||||||||||    
T  52917182 acattacaataactttcaagctttt-aagcttattgcataagatcctaaatctatttctactattaacttattacataagtattactggtggctc 52917275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 131 - 196
Target Start/End: Original strand, 55609798 - 55609863
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactctta 196  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||    
T  55609798 acattacaataattttcaagctttttaagcttattacataagatgctaaatctatttctactctta 55609863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 1603647 - 1603588
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  1603647 acattacaataattttcaagctttttaagcttattacataagatcctaaatctatttcta 1603588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 4189160 - 4189219
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  4189160 acattacaataattttcaagctttttaagcttattacataagatcctaaatctatttcta 4189219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 6964316 - 6964257
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  6964316 acattacaataattttcaagctttttaagcttattacataagatcctaaatctatttcta 6964257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 9035372 - 9035431
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  9035372 acattacaataattttcaagctttttaagcttattacataagatcctaaatctatttcta 9035431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 31093963 - 31093904
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  31093963 acattacaataattttcaagctttttaagcttattacataagatcctaaatctatttcta 31093904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 38217557 - 38217616
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  38217557 acattacaataattttcaagctttttaagcttattacataagatcctaaatctatttcta 38217616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 45229933 - 45229874
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  45229933 acattacaataattttcaagctttttaagcttattacataagatcctaaatctatttcta 45229874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 49375180 - 49375121
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  49375180 acattacaataattttcaagctttttaagcttattacataagatcctaaatctatttcta 49375121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 52502272 - 52502213
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  52502272 acattacaataattttcaagctttttaagcttattacataagatcctaaatctatttcta 52502213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 131 - 195
Target Start/End: Complemental strand, 5419692 - 5419628
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactctt 195  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||| ||||    
T  5419692 acattacaataattttcaagctttttaagcctattacataagatcctaaatttaattctaatctt 5419628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 30004421 - 30004365
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttattt 187  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  30004421 acattacaataattttcaagctttttaagcttattacataagatcctaaatctattt 30004365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 135 - 190
Target Start/End: Original strand, 167806 - 167861
Alignment:
Q  135 tacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  167806 tacaataattttcaagctttttaagcttattacataagatcctaaatctatttcta 167861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 4049000 - 4048941
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||    
T  4049000 acattacaataattttcaagctttttaagtttattacataagatcctaaatatatttcta 4048941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 15542094 - 15542153
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||    
T  15542094 acattacaataattttcaagttttttaagcttattacataagatcctaaatctatttcta 15542153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 28780059 - 28780118
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||    
T  28780059 acattacaataattttcaagctttttaagcttatcacataagatcctaaatctatttcta 28780118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 35319151 - 35319210
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||    
T  35319151 acattacaataattttcaagttttttaagcttattacataagatcctaaatctatttcta 35319210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 35159584 - 35159525
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||| ||  ||||| ||||||||    
T  35159584 acattacaataattttcaagctttttaagcttattacataagatgttaaatctatttcta 35159525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 40728893 - 40728834
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||||||||||||||||| |||||||| ||||||||||| ||||||||| ||||||||    
T  40728893 acattacaataattttcaagttttttaagtttattacataagatcctaaatctatttcta 40728834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 45463052 - 45462993
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||||||| ||||||||||||||||| |||||||||||| ||||||||| ||||||||    
T  45463052 acattacaatcattttcaagctttttaaacttattacataagatcctaaatctatttcta 45462993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 16024730 - 16024680
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaat 181  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  16024730 acattacaataattttcaagctttttatgcttattacataagatcctaaat 16024680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 51539475 - 51539419
Alignment:
Q  133 attacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||    
T  51539475 attacaataattttcaagctttt-aagcttattacataagatcctaaatctatttcta 51539419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 38550546 - 38550605
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||| |||||||||||||||||||||||||| ||||||| ||| ||||| ||||||||    
T  38550546 acattataataattttcaagctttttaagcttaatacataagatcttaaatctatttcta 38550605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 56462942 - 56463001
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||||||||||||||||||||||||||||||| | | || ||||||||| ||||||||    
T  56462942 acattacaataattttcaagctttttaagcttatgatacaagatcctaaatctatttcta 56463001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 131 - 168
Target Start/End: Original strand, 28310158 - 28310195
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattaca 168  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28310158 acattacaataattttcaagctttttaagcttattaca 28310195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 310
Target Start/End: Complemental strand, 53513035 - 53512974
Alignment:
Q  249 aggaaagaagatggcgaggaagaagaaaccaatgttgccttacagaacatactagtagcttt 310  Q
    |||||||||||||||| ||||||||||||||||| ||||| | || |||||| |||||||||    
T  53513035 aggaaagaagatggcggggaagaagaaaccaatgctgcctgataggacataccagtagcttt 53512974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 288
Target Start/End: Original strand, 18559685 - 18559828
Alignment:
Q  152 tttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggct-------ctggtgtagaggaaagannn 244  Q
    |||| ||||||| ||||||| ||||||||| |||||||| ||||| |||||||||||||  ||||   |||||       |||||  ||||||||||       
T  18559685 ttttcaagcttagtacataagatcctaaatctatttctaatcttatcttattacataagttataccaatggctccagccactggtagagaggaaagaggg 18559784  T
Q  245 nnnnaggaaagaagatggcgaggaagaagaaaccaatgttgcct 288  Q
        |||||||||||||||| ||||||||||||||||| |||||    
T  18559785 ggggaggaaagaagatggcggggaagaagaaaccaatgctgcct 18559828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 56318638 - 56318594
Alignment:
Q  137 caataattttcaagctttttaagcttattacataatatcctaaat 181  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||    
T  56318638 caataattttcaaactttttaagcttattacataagatcctaaat 56318594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 52416206 - 52416264
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||||||||||||||||| ||| |||||||||||||||| || |||||| ||||||||    
T  52416206 acattacaataattttcaag-tttgtaagcttattacataagattctaaatctatttcta 52416264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 47605116 - 47605059
Alignment:
Q  253 aagaagatggcgaggaagaagaaaccaatgttgccttacagaacatactagtagcttt 310  Q
    |||||||||||| ||||||||||||||||| ||||| | || |||||| |||||||||    
T  47605116 aagaagatggcggggaagaagaaaccaatgctgcctgataggacataccagtagcttt 47605059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 152 - 190
Target Start/End: Original strand, 2013023 - 2013061
Alignment:
Q  152 tttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  2013023 tttttaagcttattacataagatcctaaatctatttcta 2013061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 310
Target Start/End: Original strand, 40690795 - 40690855
Alignment:
Q  250 ggaaagaagatggcgaggaagaagaaaccaatgttgccttacagaacatactagtagcttt 310  Q
    ||||||||||||| | ||||||||||||||||| ||||| | || |||||| | |||||||    
T  40690795 ggaaagaagatggtggggaagaagaaaccaatgctgcctgataggacataccactagcttt 40690855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 131 - 310
Target Start/End: Complemental strand, 48065785 - 48065599
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggct------ 224  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||  |||||||          
T  48065785 acattacaataattttcaagctttttaagcttattacataagatgctaaatctatttctactcttaacttattacataagcaatatcggtggctccagcc 48065686  T
Q  225 -ctggtgtagaggaaagannnnnnnaggaaagaagatggcgaggaagaagaaaccaatgttgccttacagaacatactagtagcttt 310  Q
     | |||| ||||||||||       |||||||||||||||| | |||||||||||||||||| || | || |||||| |||||||||    
T  48065685 accggtggagaggaaagagggggggaggaaagaagatggcgggaaagaagaaaccaatgttgtctgataggacatacaagtagcttt 48065599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 131 - 225
Target Start/End: Original strand, 49324988 - 49325082
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggctc 225  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  49324988 acattacaataattttcaagctttttaagcttattacataagatgctaaatctatttctactcttaacttattacataagcaatactggtggctc 49325082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 131 - 310
Target Start/End: Original strand, 47372446 - 47372632
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggct------ 224  Q
    ||||||||||||||||||||||||||||||||||||||| | || |||||| ||||||||||||||||||||||||||||||||||  ||||||          
T  47372446 acattacaataattttcaagctttttaagcttattacatgagatgctaaatctatttctactcttaacttattacataagcaataccagtggctccaacc 47372545  T
Q  225 -ctggtgtagaggaaagannnnnnnaggaaagaagatggcgaggaagaagaaaccaatgttgccttacagaacatactagtagcttt 310  Q
     | |||| ||||||||||       |||||||||||||||| ||||||||||||||||| ||||| |  | |||||| |||||||||    
T  47372546 accggtggagaggaaagagggggggaggaaagaagatggcggggaagaagaaaccaatgctgcctaatgggacataccagtagcttt 47372632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 133 - 288
Target Start/End: Original strand, 21448327 - 21448489
Alignment:
Q  133 attacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggctc------- 225  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||| ||           
T  21448327 attacaataattttcaagttttttaagcttattacataagatcctaaatctatttctactcttaacttattacataagcaataccggtggttccagccat 21448426  T
Q  226 tggtgtagaggaaagannnnnnnaggaaagaagatggcgaggaagaagaaaccaatgttgcct 288  Q
     |||| ||||||||||       ||||| |||||||||| ||||||| |||||||||||||||    
T  21448427 cggtggagaggaaagagggggggaggaatgaagatggcggggaagaaaaaaccaatgttgcct 21448489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 131 - 225
Target Start/End: Original strand, 8484110 - 8484203
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggctc 225  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  8484110 acattacaataattt-caagctttttaagcttattacataagatcctaaatctatttctactcttaacttattacataagcaataccggtggctc 8484203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 131 - 310
Target Start/End: Original strand, 44205128 - 44205313
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggct------ 224  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||  |||||||          
T  44205128 acattacaataattttcaagctttttaaacttattacataagatcctaaatctatttatactcttaacttattacataagcaatatcggtggctccagcc 44205227  T
Q  225 -ctggtgtagaggaaagannnnnnnaggaaagaagatggcgaggaagaagaaaccaatgttgccttacagaacatactagtagcttt 310  Q
     | |||| ||| ||||||       | |||||||||||||| ||||||||||||||||||||||| | || |||||| |||||||||    
T  44205228 accggtggagatgaaaga-ggggggacgaaagaagatggcggggaagaagaaaccaatgttgcctgatagcacataccagtagcttt 44205313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 131 - 225
Target Start/End: Original strand, 3939145 - 3939239
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggctc 225  Q
    |||||||||||||||| ||||||||||||| |||||||||| || |||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  3939145 acattacaataatttttaagctttttaagcctattacataagatgctaaatctatttctactcttaacttagtacataagcaatactggtggctc 3939239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 131 - 216
Target Start/End: Complemental strand, 30390567 - 30390482
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatac 216  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||    
T  30390567 acattacaataattttcaagttttttaagcttattacataagatcctaaatctatttttactcttaacttattacataagcaatac 30390482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 134 - 216
Target Start/End: Complemental strand, 9128499 - 9128417
Alignment:
Q  134 ttacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatac 216  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||| ||||    
T  9128499 ttacaataattttcaagctttttaagcttattacataagatcctaaatctatttctactcttatcttattacataagctatac 9128417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 134 - 216
Target Start/End: Complemental strand, 9136606 - 9136524
Alignment:
Q  134 ttacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatac 216  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||| ||||    
T  9136606 ttacaataattttcaagctttttaagcttattacataagatcctaaatctatttctactcttatcttattacataagctatac 9136524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 134 - 225
Target Start/End: Original strand, 41972442 - 41972533
Alignment:
Q  134 ttacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggctc 225  Q
    ||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||| ||| ||||    
T  41972442 ttacaataattttcaaattttttaagcttattacataaaatcctaaatttatttctactcttaatttaatacataagcaataccggtagctc 41972533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 131 - 196
Target Start/End: Complemental strand, 16479070 - 16479005
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactctta 196  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||    
T  16479070 acattacaataattttcaagctttttaagcttattacataagatgctaaatctatttctactctta 16479005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 39353972 - 39353913
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  39353972 acattacaataattttcaagctttttaagcttattacataagatcctaaatctatttcta 39353913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 47013035 - 47013094
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  47013035 acattacaataattttcaagctttttaagcttattacataagatcctaaatctatttcta 47013094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 47647781 - 47647722
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  47647781 acattacaataattttcaagctttttaagcttattacataagatcctaaatctatttcta 47647722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 49165376 - 49165435
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  49165376 acattacaataattttcaagctttttaagcttattacataagatcctaaatctatttcta 49165435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 53816799 - 53816743
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttattt 187  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  53816799 acattacaataattttcaagctttttaagcttattacataagatcctaaatctattt 53816743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 228242 - 228183
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||    
T  228242 acattacaataattttcaagctttttaaacttattacataagatcctaaatctatttcta 228183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 53226269 - 53226199
Alignment:
Q  11 gattacacatgccaagcaattcacaatatatgacttagcctaaatttaataagaatgaaaagcgctcgctt 81  Q
    ||||||||||| ||| | ||||||||||||| |||||||||||||||||||||||||||||| ||| ||||    
T  53226269 gattacacatgtcaaaccattcacaatatattacttagcctaaatttaataagaatgaaaagtgcttgctt 53226199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 41193033 - 41193092
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||| ||||||||||||| ||| ||||||||| ||||||||    
T  41193033 acattacaataattttcaagcttcttaagcttattacgtaagatcctaaatctatttcta 41193092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 36402096 - 36402154
Alignment:
Q  132 cattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||| |||| ||| ||||| ||||||||    
T  36402096 cattacaataattttcaagctttttaagcttattaaataagatcttaaatctatttcta 36402154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 140 - 190
Target Start/End: Complemental strand, 39587426 - 39587376
Alignment:
Q  140 taattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  39587426 taattttcaagctttttaagcttattacataagatcctaaatctatttcta 39587376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 26501472 - 26501530
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||| |||||||||||||||| |||| ||||||||| ||||||||    
T  26501472 acattacaataattttcaa-ctttttaagcttattatataagatcctaaatctatttcta 26501530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 6937286 - 6937231
Alignment:
Q  133 attacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||||||||||||||||||||||||||  |||||||| ||||||||| ||||||||    
T  6937286 attacaataattttcaagctttttaagct--ttacataagatcctaaatctatttcta 6937231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 31764469 - 31764525
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttattt 187  Q
    ||||||||||||| || ||||||||||||||||||| |||| | |||||||||||||    
T  31764469 acattacaataatgttgaagctttttaagcttattatataagaacctaaatttattt 31764525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 32530649 - 32530590
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||||||||||||||||||||||||||||||||  |||| ||| ||||| || |||||    
T  32530649 acattacaataattttcaagctttttaagcttattttataagatcttaaatctaattcta 32530590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 249 - 310
Target Start/End: Original strand, 3939273 - 3939334
Alignment:
Q  249 aggaaagaagatggcgaggaagaagaaaccaatgttgccttacagaacatactagtagcttt 310  Q
    |||||||||||||||  |||| |||||||||||||||||| | || |||||| |||||||||    
T  3939273 aggaaagaagatggcagggaaaaagaaaccaatgttgcctgataggacataccagtagcttt 3939334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 250 - 310
Target Start/End: Original strand, 8484237 - 8484297
Alignment:
Q  250 ggaaagaagatggcgaggaagaagaaaccaatgttgccttacagaacatactagtagcttt 310  Q
    ||||||||||||| | ||||||||||||||||| ||||| |  |||||||| |||||||||    
T  8484237 ggaaagaagatggaggggaagaagaaaccaatgctgcctaatggaacataccagtagcttt 8484297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 310
Target Start/End: Complemental strand, 30390443 - 30390382
Alignment:
Q  249 aggaaagaagatggcgaggaagaagaaaccaatgttgccttacagaacatactagtagcttt 310  Q
    |||||||||||||| | |||||| |||||||||| ||||| | || |||||| |||||||||    
T  30390443 aggaaagaagatggaggggaagatgaaaccaatgctgcctgataggacataccagtagcttt 30390382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 310
Target Start/End: Complemental strand, 9128384 - 9128324
Alignment:
Q  250 ggaaagaagatggcgaggaagaagaaaccaatgttgccttacagaacatactagtagcttt 310  Q
    ||||||||||||| | ||||||||||| ||||| ||| | | ||||||||| |||||||||    
T  9128384 ggaaagaagatgggggggaagaagaaaacaatgctgcttgatagaacataccagtagcttt 9128324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 310
Target Start/End: Complemental strand, 9136491 - 9136431
Alignment:
Q  250 ggaaagaagatggcgaggaagaagaaaccaatgttgccttacagaacatactagtagcttt 310  Q
    ||||||||||||| | ||||||||||| ||||| ||| | | ||||||||| |||||||||    
T  9136491 ggaaagaagatgggggggaagaagaaaacaatgctgcttgatagaacataccagtagcttt 9136431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 5e-39; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 133 - 310
Target Start/End: Original strand, 24853582 - 24853767
Alignment:
Q  133 attacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggct-------c 225  Q
    |||||| |||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||| |||||||       |    
T  24853582 attacattaattttcaagctttttaagcttattacatgagatcctaaatctatttctactcttaacttattacataagcaataccggtggctccagccac 24853681  T
Q  226 tggtgtagaggaaaga-nnnnnnnaggaaagaagatggcgaggaagaagaaaccaatgttgccttacagaacatactagtagcttt 310  Q
    ||||| ||||||||||        |||||||||||||||| ||||||||||| ||||| ||||| | || ||||||||||||||||    
T  24853682 tggtggagaggaaagaggggggggaggaaagaagatggcggggaagaagaaatcaatgctgcctgataggacatactagtagcttt 24853767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 131 - 310
Target Start/End: Complemental strand, 22192689 - 22192503
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggct------ 224  Q
    |||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||          
T  22192689 acattacaataattttcaagctatctaagcttattacataagatcctaaatttatttctactcttaacttattacataagcaataccggtggctccagcc 22192590  T
Q  225 -ctggtgtagaggaaagannnnnnnaggaaagaagatggcgaggaagaagaaaccaatgttgccttacagaacatactagtagcttt 310  Q
     | |||| ||||||||||        ||||||||||||||| ||||||||||| |||||||| || |  | |||||| |||||||||    
T  22192589 accggtggagaggaaagaggggggagggaaagaagatggcggggaagaagaaatcaatgttgtctgatgggacataccagtagcttt 22192503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 131 - 310
Target Start/End: Original strand, 1708979 - 1709163
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggct------ 224  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||  |||||||          
T  1708979 acattacaataattttcaagctttttaagcttattacataagatgctaaatctatttctactcttaacttattacataagcaatatcggtggctccagcc 1709078  T
Q  225 -ctggtgtagaggaaagannnnnnnaggaaagaagatggcgaggaagaagaaaccaatgttgccttacagaacatactagtagcttt 310  Q
     | |||| ||||||||||       |||||||||||||| | ||||||||||||||||| ||||| | || |||||| |||||||||    
T  1709079 accggtggagaggaaaga--gggggaggaaagaagatggtggggaagaagaaaccaatgctgcctgataggacataccagtagcttt 1709163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 133 - 310
Target Start/End: Original strand, 5336464 - 5336647
Alignment:
Q  133 attacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggct-------c 225  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||| | |||||       |    
T  5336464 attacaataattttcaagctttttaagcttattacataagatgctaaatctatttctactcttaacttattacataagcaataccgatggctccagccac 5336563  T
Q  226 tggtgtagaggaaagannnnnnnaggaaagaagatggcgaggaagaagaaaccaatgttgccttacagaacatactagtagcttt 310  Q
     |||| |||||||| |       |||||||||||||||| ||||||||||||||||||| ||| |  |||||||| |||||||||    
T  5336564 cggtggagaggaaa-aaggggggaggaaagaagatggcggggaagaagaaaccaatgtttcctgatggaacatacaagtagcttt 5336647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 131 - 225
Target Start/End: Original strand, 6430847 - 6430941
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggctc 225  Q
    |||||||||||||||||||| |||||||||||||||||||| ||  ||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  6430847 acattacaataattttcaagttttttaagcttattacataagatgttaaatctatttctactcttaacttattacataagcaataccggtggctc 6430941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 8198246 - 8198187
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  8198246 acattacaataattttcaagctttttaagcttattacataagatcctaaatctatttcta 8198187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 8735559 - 8735500
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  8735559 acattacaataattttcaagctttttaagcttattacataagatcctaaatctatttcta 8735500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 12786027 - 12785968
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  12786027 acattacaataattttcaagctttttaagcttattacataagatcctaaatctatttcta 12785968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 16512863 - 16512922
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  16512863 acattacaataattttcaagctttttaagcttattacataagatcctaaatctatttcta 16512922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 25976409 - 25976468
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  25976409 acattacaataattttcaagctttttaagcttattacataagatcctaaatctatttcta 25976468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 134 - 195
Target Start/End: Original strand, 8298526 - 8298587
Alignment:
Q  134 ttacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactctt 195  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||    
T  8298526 ttacaataattttcaagctttttaagcttattacataagatcctaaatctatttctaatctt 8298587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 38678738 - 38678795
Alignment:
Q  133 attacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  38678738 attacaataattttcaagctttttaagcttattacataagatcctaaatctatttcta 38678795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 3557487 - 3557428
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  3557487 acattataataattttcaagctttttaagcttattacataagatcctaaatctatttcta 3557428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 12724544 - 12724485
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||    
T  12724544 acattacaataattttcaagttttttaagcttattacataagatcctaaatctatttcta 12724485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 18809835 - 18809776
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||    
T  18809835 acattacaataattttcaagttttttaagcttattacataagatcctaaatctatttcta 18809776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 26279920 - 26279861
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||    
T  26279920 acattacaataattttcaagctttttaagcgtattacataagatcctaaatctatttcta 26279861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 37884284 - 37884225
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||    
T  37884284 acattacaataattttcaagctttttaagcttattacgtaagatcctaaatctatttcta 37884225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 37029572 - 37029629
Alignment:
Q  133 attacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||    
T  37029572 attacaataattttcaagctttttaagcttattacataagatccttaatctatttcta 37029629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 20336765 - 20336824
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||||||||||||||||||||||||||| |||||||||| || ||||||||| |||||    
T  20336765 acattacaataattttcaagctttttaagcctattacataagatactaaatttaattcta 20336824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 27115168 - 27115109
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||||||||||||||||||||||||| |||||||||||| ||| ||||| ||||||||    
T  27115168 acattacaataattttcaagctttttaaacttattacataagatcataaatctatttcta 27115109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 11719216 - 11719272
Alignment:
Q  134 ttacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||| |||||||||||| ||| ||||| ||||||||    
T  11719216 ttacaataattttcaagctttttaaacttattacataagatcttaaatatatttcta 11719272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 17504492 - 17504433
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||||||||||||||||||||||||| ||||||| |||| ||| ||||| ||||||||    
T  17504492 acattacaataattttcaagctttttaaacttattatataagatcataaatctatttcta 17504433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 131 - 210
Target Start/End: Original strand, 31469903 - 31469977
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataag 210  Q
    ||||||||||||| || ||||||||||||||||||||     ||||||||  |||||||| ||||| |||||||||||||    
T  31469903 acattacaataatgttgaagctttttaagcttattac-----atcctaaaactatttctaatcttatcttattacataag 31469977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 27950934 - 27950877
Alignment:
Q  133 attacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||| || |||||||||||||||||||||||| | ||||||  ||||||||    
T  27950934 attacaataatgttgaagctttttaagcttattacataagaacctaaaactatttcta 27950877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 190
Target Start/End: Complemental strand, 37013621 - 37013579
Alignment:
Q  148 aagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||| |||||||||||||||| ||||||||| ||||||||    
T  37013621 aagctttataagcttattacataagatcctaaatctatttcta 37013579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 18845326 - 18845370
Alignment:
Q  51 taaatttaataagaatgaaaagcgctcgcttatgtttgtgttgtg 95  Q
    |||||||||||||||||||||| ||| |||| |||||||| ||||    
T  18845326 taaatttaataagaatgaaaagtgcttgcttctgtttgtgatgtg 18845370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 3e-37; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 131 - 222
Target Start/End: Complemental strand, 42191622 - 42191531
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtgg 222  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  42191622 acattacaataattttcaagctttttaagcttattacataagatcctaaatctatttctactcttaacttattacataagcaataccggtgg 42191531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 131 - 225
Target Start/End: Complemental strand, 24835038 - 24834944
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggctc 225  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||| ||||||||||||| ||||||||    
T  24835038 acattacaataattttcaagctttttaagcttattacataagatcttaaatctatttctactcttaacttataacataagcaataccggtggctc 24834944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 8240655 - 8240740
Alignment:
Q  9 atgattacacatgccaagcaattcacaatatatgacttagcctaaatttaataagaatgaaaagcgctcgcttatgtttgtgttgt 94  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||    
T  8240655 atgattacacatgccaagccattcacaatatatgacttagcctaaatttaataggaatgaaaagcacttgcttatgtttgtgttgt 8240740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 8239260 - 8239319
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  8239260 acattacaataattttcaagctttttaagcttattacataatatcctaaatctacttcta 8239319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 28249608 - 28249549
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  28249608 acattacaataattttcaagctttttaagcttattacataagatcctaaatctatttcta 28249549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 39259575 - 39259634
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  39259575 acattacaataattttcaagctttttaagcttattacataagatcctaaatctatttcta 39259634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 39317891 - 39317950
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  39317891 acattacaataattttcaagctttttaagcttattacataagatcctaaatctatttcta 39317950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 43097799 - 43097858
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  43097799 acattgcaataattttcaagctttttaagcttattacataatatcctaaatctatttcta 43097858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 6348179 - 6348120
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||    
T  6348179 acattacaataattttcaagctttttaagcttattatataagatcctaaatctatttcta 6348120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 135 - 190
Target Start/End: Complemental strand, 11077046 - 11076991
Alignment:
Q  135 tacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  11077046 tacaataattttcaagctttttaagcttattacataagatcctaaatctatttcta 11076991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 13545527 - 13545586
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  13545527 acattaaaataattttcaagctttttaagcttattacataagatcctaaatctatttcta 13545586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 13678946 - 13678887
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  13678946 acattaaaataattttcaagctttttaagcttattacataagatcctaaatctatttcta 13678887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 35683289 - 35683348
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||    
T  35683289 acattacaataattttaaagctttttaagcttattacataagatcctaaatctatttcta 35683348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 40104521 - 40104581
Alignment:
Q  131 acattacaataattttcaagctttt-taagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||    
T  40104521 acattacaataattttcaagcttttttaagcttattacataagatcctaaatctatttcta 40104581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 42131197 - 42131253
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttattt 187  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||    
T  42131197 acattacaataattttcaagctttttaagcttattacataagatcttaaatatattt 42131253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 23143400 - 23143459
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||||||||||||||||| |||||||||||||||||||| || |||||| ||||||||    
T  23143400 acattacaataattttcaagttttttaagcttattacataagattctaaatctatttcta 23143459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 31700301 - 31700360
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||| ||||||||||| |||||||||||||||||||||| ||||||||| ||||||||    
T  31700301 acattataataattttcaggctttttaagcttattacataagatcctaaatctatttcta 31700360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 225533 - 225474
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||| || |||||||||||||||||||||||| | ||||||| ||||||||    
T  225533 acattacaataatgttgaagctttttaagcttattacataagaacctaaatctatttcta 225474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 701946 - 701887
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||| || |||||||||||||||||||||||| | ||||||| ||||||||    
T  701946 acattacaataatgttgaagctttttaagcttattacataagaacctaaatctatttcta 701887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 739156 - 739097
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||| || |||||||||||||||||||||||| | ||||||| ||||||||    
T  739156 acattacaataatgttgaagctttttaagcttattacataagaacctaaatctatttcta 739097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 863051 - 862992
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||| || |||||||||||||||||||||||| | ||||||| ||||||||    
T  863051 acattacaataatgttgaagctttttaagcttattacataagaacctaaatctatttcta 862992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 190
Target Start/End: Complemental strand, 20092737 - 20092682
Alignment:
Q  135 tacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||| ||||| ||| ||||| ||||||||    
T  20092737 tacaataattttcaagctttttaagcttattgcataagatcttaaatctatttcta 20092682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 32338695 - 32338636
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||| ||| ||||||||||| ||| ||||| ||||||||    
T  32338695 acattacaataattttcaagcttttaaagtttattacataagatcttaaatctatttcta 32338636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 37099187 - 37099128
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||||||||||||||||| ||||||| |||||||||| | ||||||||| ||||||||    
T  37099187 acattacaataattttcaagttttttaaccttattacatcagatcctaaatctatttcta 37099128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 38224692 - 38224751
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||| || ||| ||||||| |||||||||||||| ||||||  ||||||||    
T  38224692 acattacaataatgttgaagttttttaaacttattacataataacctaaaactatttcta 38224751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 4257952 - 4258008
Alignment:
Q  134 ttacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||||||| || ||| |||||||||||||||||||| | | |||| |||||||||    
T  4257952 ttacaataatgttgaagttttttaagcttattacataagaacttaaaattatttcta 4258008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 131 - 310
Target Start/End: Complemental strand, 43334535 - 43334350
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggct------ 224  Q
    |||||||||||||||||||||||||||| |||||||||||| || |||||| |||||||||||||||||||||||||||||||||| | |||||          
T  43334535 acattacaataattttcaagctttttaaacttattacataagatgctaaatctatttctactcttaacttattacataagcaataccgatggctccagcc 43334436  T
Q  225 -ctggtgtagaggaaagannnnnnnaggaaagaagatggcgaggaagaagaaaccaatgttgccttacagaacatactagtagcttt 310  Q
     | |||| ||||||||||       |||||||||||||||| ||||||||||||||||| ||||| | || |||||| |||||||||    
T  43334435 accggtggagaggaaaga-ggggggaggaaagaagatggcggggaagaagaaaccaatgctgcctgataggacataccagtagcttt 43334350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 131 - 310
Target Start/End: Original strand, 5462067 - 5462235
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggctctggtg 230  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||           | | ||||    
T  5462067 acattacaataattttcaagctttttaagcttattacataagatcctaaatctatttctactcttaacttattacataagc-----------caccggtg 5462155  T
Q  231 tagaggaaagannnnnnnaggaaagaagatggcgaggaagaagaaaccaatgttgccttacagaacatactagtagcttt 310  Q
     ||||||||||       |||||||||||||||| ||||||||||| ||||| ||||| | || ||||||||||||||||    
T  5462156 gagaggaaagagggggggaggaaagaagatggcggggaagaagaaatcaatgatgcctgataggacatactagtagcttt 5462235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 131 - 210
Target Start/End: Original strand, 15111007 - 15111086
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataag 210  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||| |||||| | ||||| |||||||||||||    
T  15111007 acattacaataattttcaagctttttaagcttattacataagattctaaatctatttccaatcttatcttattacataag 15111086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 1209188 - 1209247
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  1209188 acattacaataattttcaagctttttaagcttattacataagatcctaaatatatttcta 1209247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 6404979 - 6404920
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  6404979 acattacaataattttcaagctttttaagcttattacataagatcctaaatctatttcta 6404920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 45235090 - 45235031
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  45235090 acattacaataattttcaagctttttaagcttattacataagatcctaaatctatttcta 45235031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 131 - 210
Target Start/End: Original strand, 5935531 - 5935610
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataag 210  Q
    ||||||||||||| || |||||||||||||||||||||||| | |||||| ||||||||| | ||| |||||||||||||    
T  5935531 acattacaataatgttgaagctttttaagcttattacataagaacctaaaattatttctaattttatcttattacataag 5935610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 13279540 - 13279481
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  13279540 acattacattaattttcaagctttttaagcttattacataagatcctaaatctatttcta 13279481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 17136975 - 17137034
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||    
T  17136975 acattacaataattttcaagctttttaagcttattacataagttcctaaatctatttcta 17137034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 31993351 - 31993410
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||    
T  31993351 acattacaataattttcaagatttttaagcttattacataagatcctaaatctatttcta 31993410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 131 - 226
Target Start/End: Complemental strand, 34950891 - 34950796
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggctct 226  Q
    ||||||||||||| || |||||||||||||||||||||||| | ||||||  ||||| || ||||| |||||||||||||| ||||  ||||||||    
T  34950891 acattacaataatgttaaagctttttaagcttattacataagaacctaaaactatttataatcttatcttattacataagctataccagtggctct 34950796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 45117873 - 45117814
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||    
T  45117873 acattacaataattttcaagctttttaagcttattacataagatcttaaatctatttcta 45117814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 15912575 - 15912516
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||| ||||| ||||| ||||||||| ||||||||    
T  15912575 acattacaataattttcaagctttttaagtttattccataagatcctaaatctatttcta 15912516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 38209196 - 38209137
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||  ||||||||||||||||||| ||||||||| ||||||||    
T  38209196 acattacaataattttcaagtcttttaagcttattacataagatcctaaatctatttcta 38209137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 44760898 - 44760839
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||| ||||| ||||||||||||||| ||||||||| ||||||||    
T  44760898 acattacaataattttcaaccttttcaagcttattacataagatcctaaatctatttcta 44760839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 1115968 - 1115909
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||| ||||| |||||||||||||| ||||||||||||| ||||||||| ||||||||    
T  1115968 acattataataactttcaagctttttaggcttattacataagatcctaaatctatttcta 1115909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 30490042 - 30490100
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||| ||||||||||||||||||||| ||||||||||| ||||||||| ||||||||    
T  30490042 acattactataattttcaagctttttaag-ttattacataagatcctaaatctatttcta 30490100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 38702880 - 38702939
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||| ||||||| |||||||| |||| ||||||||| ||||||||    
T  38702880 acattacaataattttcaaactttttaggcttattatataagatcctaaatctatttcta 38702939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 131 - 181
Target Start/End: Original strand, 7940816 - 7940866
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaat 181  Q
    ||||||||||||||||||| |||||||||||||||| |||| |||||||||    
T  7940816 acattacaataattttcaaactttttaagcttattatataagatcctaaat 7940866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 16415336 - 16415296
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataa 171  Q
    ||||||||||||| || ||||||||||||||||||||||||    
T  16415336 acattacaataatgttgaagctttttaagcttattacataa 16415296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 310
Target Start/End: Original strand, 5935641 - 5935702
Alignment:
Q  249 aggaaagaagatggcgaggaagaagaaaccaatgttgccttacagaacatactagtagcttt 310  Q
    |||||||||||||||| |||||||||||| |||| ||||| | || |||||  |||||||||    
T  5935641 aggaaagaagatggcggggaagaagaaacaaatgctgcctaataggacatagcagtagcttt 5935702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 196
Target Start/End: Original strand, 31715168 - 31715233
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactctta 196  Q
    |||||||||||||  | || ||||||||||||||||||||| | ||||||  |||||||| |||||    
T  31715168 acattacaataatgatgaaactttttaagcttattacataagaacctaaaactatttctaatctta 31715233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 131 - 310
Target Start/End: Complemental strand, 29437371 - 29437186
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggct------ 224  Q
    |||||||||||| |||||||||||||||||||||||||||| ||  ||||| ||||| |||||||||||||||||||||||||||| |||||||          
T  29437371 acattacaataactttcaagctttttaagcttattacataagatgttaaatctatttttactcttaacttattacataagcaataccggtggctccagcc 29437272  T
Q  225 -ctggtgtagaggaaagannnnnnnaggaaagaagatggcgaggaagaagaaaccaatgttgccttacagaacatactagtagcttt 310  Q
     | |||| ||||||||||       |||||||||||||||| ||||||||||||||||| ||||| | || |||||| |||||||||    
T  29437271 accggtggagaggaaaga-ggggggaggaaagaagatggcggggaagaagaaaccaatgatgcctgataggacataccagtagcttt 29437186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 18574795 - 18574711
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaata 215  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||    
T  18574795 acattacaataattttcaagttttttaagcttattacataagatcctaaatctatttctactcttaacttattacacaagcaata 18574711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 18584676 - 18584592
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaata 215  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||    
T  18584676 acattacaataattttcaagttttttaagcttattacataagatcctaaatctatttctactcttaacttattacacaagcaata 18584592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 131 - 225
Target Start/End: Complemental strand, 481564 - 481470
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggctc 225  Q
    |||||||||||||||||||||||||||| ||||||||| || ||||||||| ||||| ||||||||||||||||||||||||||||  |||||||    
T  481564 acattacaataattttcaagctttttaatcttattacacaagatcctaaatctatttatactcttaacttattacataagcaataccagtggctc 481470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 131 - 225
Target Start/End: Complemental strand, 34951276 - 34951182
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttattacataagcaatactggtggctc 225  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||| ||| | ||||||||||||| ||||||||||| |||||||||||    
T  34951276 acattacaataattttcaagctttttaagcttattacataagatgctaaatctatctatactcttaacttactacataagcaacactggtggctc 34951182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 30710899 - 30710984
Alignment:
Q  9 atgattacacatgccaagcaattcacaatatatgacttagcctaaatttaataagaatgaaaagcgctcgcttatgtttgtgttgt 94  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | | |||| ||||||||||||    
T  30710899 atgattacacatgccaagccattcacaatatatgacttagcctaaatttaataagaatgaaaagtgtttgcttttgtttgtgttgt 30710984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 14503697 - 14503816
Alignment:
Q  9 atgattacacatgccaagcaattcacaatatatgacttagcctaaatttaataagaatgaaaagcgctcgcttatgt-ttgtgttgtgcacttactgctg 107  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||| |||| ||| ||||||||| | ||   |||||    
T  14503697 atgattacacatgccaagctattcacaatatatgactaagcctaaatttaataagaatgaaaaacgcttgcttctgtgttgtgttgttcgct---tgctg 14503793  T
Q  108 ggagaaaaaagaatgaaaagggc 130  Q
      ||||| |||||||||||||||    
T  14503794 aaagaaagaagaatgaaaagggc 14503816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 11975836 - 11975777
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  11975836 acattacaataattttcaagctttttaagcttattacataagatcctaaatctatttcta 11975777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 31319384 - 31319325
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  31319384 acattacaataattttcaagctttttaaggttattacataagatcctaaatttatttcta 31319325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 31722176 - 31722235
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  31722176 acattacaataattttcaagctttttaagcttattacataagatcctaaatctatttcta 31722235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 34540704 - 34540763
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  34540704 acattacaataattttcaagctttttaagcttattacataagatcctaaatctatttcta 34540763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 304621 - 304565
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttattt 187  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  304621 acattacaataattttcaagctttttaagcttattacataagatcctaaatctattt 304565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 16396207 - 16396148
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||    
T  16396207 acattacaataattttcaagttttttaagcttattacataagatcctaaatctatttcta 16396148  T

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Target: chr6; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 9304273 - 9304332
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    |||||||||||||||||||| |||||||||||||||||||  ||||||||| ||||||||    
T  9304273 acattacaataattttcaagttttttaagcttattacatatgatcctaaatctatttcta 9304332  T

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Target: chr6; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 31272120 - 31272061
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||||||||||||||||||| |||||| |||| ||||||||| ||||||||    
T  31272120 acattacaataattttcaagctttttaagtttattatataagatcctaaatctatttcta 31272061  T

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Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 439917 - 439858
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||| |||||||||| ||||||||||||| |||||||||| ||||||||| ||||||||    
T  439917 acattgcaataatttttaagctttttaagcctattacataagatcctaaatctatttcta 439858  T

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Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 17304352 - 17304402
Alignment:
Q  53 aatttaataagaatgaaaagcgctcgcttatgtttgtgttgtgcacttact 103  Q
    ||||||||||||||||||||  || |||| |||||||||||||| ||||||    
T  17304352 aatttaataagaatgaaaagtacttgcttctgtttgtgttgtgcgcttact 17304402  T

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Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 310
Target Start/End: Complemental strand, 481440 - 481379
Alignment:
Q  249 aggaaagaagatggcgaggaagaagaaaccaatgttgccttacagaacatactagtagcttt 310  Q
    |||||||||||||||| |||||||||||| |||| ||||| | || | |||| |||||||||    
T  481440 aggaaagaagatggcggggaagaagaaactaatgctgcctgataggatataccagtagcttt 481379  T

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Target: scaffold0168 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 17849 - 17776
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttctactcttaacttatta 204  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  17849 acattacaataattttcaagttttttaagcttattacataagatcctaaatttattcctactcttaacttatta 17776  T

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Target: scaffold0121 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 46703 - 46762
Alignment:
Q  131 acattacaataattttcaagctttttaagcttattacataatatcctaaatttatttcta 190  Q
    ||||||||||||| || |||||||||||||||||||||||| | ||||| | ||||||||    
T  46703 acattacaataatgttgaagctttttaagcttattacataagaacctaattctatttcta 46762  T

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Target: scaffold0064 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 61085 - 61123
Alignment:
Q  133 attacaataattttcaagctttttaagcttattacataa 171  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  61085 attacaataatgttgaagctttttaagcttattacataa 61123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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