View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10113_high_8 (Length: 276)
Name: NF10113_high_8
Description: NF10113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10113_high_8 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 5 - 259
Target Start/End: Complemental strand, 13660562 - 13660308
Alignment:
| Q |
5 |
gaatatgatatagaatcattgttattcacggctttcagtctaaatgaatttacatattcttcgtctagatccttctgcttctcattatccattacaacag |
104 |
Q |
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| T |
13660562 |
gaatatgatatagaatcattgttattcactgctttcagtctaaatgaatttacatattcttcgtctagatccttctgcttctcattatccattacaacag |
13660463 |
T |
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| Q |
105 |
ataatacaccttgtacttcataatgacttataatatttacttcggctgcttcgtcaaacaagagcatccgaaccaatgataatcgggttcctgggtgccc |
204 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13660462 |
ataatatgccttgtacttcataatgacttataatatttacttcggctgcttcgtcaaacaagagcatccgaaccaatgataatcgggttcctgggtgccc |
13660363 |
T |
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| Q |
205 |
caccatcctccatgcaacagctaaggcttcatgatcatcaggacctccaataaag |
259 |
Q |
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| T |
13660362 |
caccatcctccatgcaacagctaaggcttcatgatcatcaggacctccaataaag |
13660308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 5 - 246
Target Start/End: Complemental strand, 13653062 - 13652821
Alignment:
| Q |
5 |
gaatatgatatagaatcattgttattcacggctttcagtctaaatgaatttacatattcttcgtctagatccttctgcttctcattatccattacaacag |
104 |
Q |
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||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13653062 |
gaataggatataaaatcattgttattcactgctttcagtctaaatgaatttacatattcttcgtctagatccttctgcttctcattatccattacaacag |
13652963 |
T |
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| Q |
105 |
ataatacaccttgtacttcataatgacttataatatttacttcggctgcttcgtcaaacaagagcatccgaaccaatgataatcgggttcctgggtgccc |
204 |
Q |
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| T |
13652962 |
ataatactccttgtgtttcattatgacttttagtgtctacttcagcagctacatctaacaggagcattcgaaccactgataatcgagttcttgggtgctc |
13652863 |
T |
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| Q |
205 |
caccatcctccatgcaacagctaaggcttcatgatcatcagg |
246 |
Q |
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| T |
13652862 |
cgccatcctccatgcaacagttaaggcttcatggtcatcagg |
13652821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 259
Target Start/End: Original strand, 437713 - 437967
Alignment:
| Q |
5 |
gaatatgatatagaatcattgttattcacggctttcagtctaaatgaatttacatattcttcgtctagatccttctgcttctcattatccattacaacag |
104 |
Q |
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||||| ||||||||||||||||| |||| ||| ||| ||||||| ||| ||||| || || |||| ||||||||||||||| |||||||||||| || |
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| T |
437713 |
gaataagatatagaatcattgttgttcatcgctgtcaatctaaatccattcacatactcatcatctaactccttctgcttctcactatccattacaatag |
437812 |
T |
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| Q |
105 |
ataatacaccttgtacttcataatgacttataatatttacttcggctgcttcgtcaaacaagagcatccgaaccaatgataatcgggttcctgggtgccc |
204 |
Q |
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||| || |||||| |||| ||||||| | | |||| | || | ||||||| |||||||||||||| ||||||| |||||||| | | || |
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| T |
437813 |
atagtatcccttgtggttcagcatgacttgaggtgtctactatttcagcattatcaaacaggagcatccgaaccactgataattgggttcctatgcgtcc |
437912 |
T |
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| Q |
205 |
caccatcctccatgcaacagctaaggcttcatgatcatcaggacctccaataaag |
259 |
Q |
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|||| ||||||||||||||||||||||| ||||||||||||| |||| |||| |
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| T |
437913 |
tgccattctccatgcaacagctaaggcttcgcgatcatcaggaccaccaacaaag |
437967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 110
Target Start/End: Complemental strand, 28609191 - 28609086
Alignment:
| Q |
5 |
gaatatgatatagaatcattgttattcacggctttcagtctaaatgaatttacatattcttcgtctagatccttctgcttctcattatccattacaacag |
104 |
Q |
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||||| ||||||||||||||||| |||| | | ||| ||||||| ||| ||||| || || |||| ||||| ||||||||| |||||||||||| || |
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| T |
28609191 |
gaataagatatagaatcattgttgttcatcgttgtcaatctaaatccattaacatactcatcatctaattccttttgcttctcactatccattacaatag |
28609092 |
T |
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| Q |
105 |
ataata |
110 |
Q |
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|||||| |
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| T |
28609091 |
ataata |
28609086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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