View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10113_low_10 (Length: 427)
Name: NF10113_low_10
Description: NF10113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10113_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 133 - 425
Target Start/End: Complemental strand, 40891402 - 40891110
Alignment:
| Q |
133 |
aaaattctcctttcatcgtataaattttatagggcaagtaacttaaggtgcttacgacttgattcatgcgatagaatatcatatgaagggtggtgtgaag |
232 |
Q |
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| T |
40891402 |
aaaattctcctttcatcgtataaattttatagggcaagtaacttaaggtgcttacaacttgattcatgcgatagaatatcatatgaagggtggtgcgaat |
40891303 |
T |
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| Q |
233 |
ttgcaaagaaatttcccctgttagaggagatttacatttcagaatgcttagaatctaatatatctcttgaagttattggccaaagttgtccttcgttgaa |
332 |
Q |
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| T |
40891302 |
ttgtaaagaaatttcccctgttagaggagatttacatttcataatgcttagaatctaatatatctcttgaagttattgggcaaagttgtcctgcgttgaa |
40891203 |
T |
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| Q |
333 |
atcactaacattctatgggatgtcggatggagaacgtttcacgtgtgatgataaggcatttattattgcaaaaacaatgcctatgctactcca |
425 |
Q |
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| T |
40891202 |
atcactaacattctatgcgatgtcggatggagaacacttcacgtgtgatgataaggcatttattattgcaaaaaaaatgcatgggctactcca |
40891110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 140 - 414
Target Start/End: Complemental strand, 30621860 - 30621588
Alignment:
| Q |
140 |
tcctttcatcgtataaattttatagggcaagtaacttaaggtgcttacgacttgattcatgcgatagaatatcatatgaagggtggtgtgaagttgcaaa |
239 |
Q |
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| T |
30621860 |
tcctttcatcatata--ttttacagggaaagtaatttaaggtgcatatgacttgattcatgcagtagagtttcaaatgaaggttggtgcaaagttgcaaa |
30621763 |
T |
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| Q |
240 |
gaaatttcccctgttagaggagatttacatttcagaatgcttagaatctaatatatctcttgaagttattggccaaagttgtccttcgttgaaatcacta |
339 |
Q |
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| T |
30621762 |
gaagtttcccctgttagaggagattaacatttcatatggcatccaatctgggaaatctcttgaagttattggtcaaagttgtcctcttttgagatcgcta |
30621663 |
T |
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| Q |
340 |
acattctatgggatgtcggatggagaacgtttcacgtgtgatgataaggcatttattattgcaaaaacaatgcct |
414 |
Q |
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| T |
30621662 |
acatttaacggggcgtcgtatagaggccgcttcaagtgtgatgatgaggcatttattattgcaaaaacaatgcct |
30621588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 162 - 320
Target Start/End: Complemental strand, 51946319 - 51946161
Alignment:
| Q |
162 |
tagggcaagtaacttaaggtgcttacgacttgattcatgcgatagaatatcatatgaagggtggtgtgaagttgcaaagaaatttcccctgttagaggag |
261 |
Q |
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| T |
51946319 |
tagggcaggtcacttaagatgcctacaacttgaatccttcgagagaatttcagataaaggatggtgtgaagttgcaaagaagtttccactattagaggag |
51946220 |
T |
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| Q |
262 |
atttacatttcagaatgcttagaatctaatatatctcttgaagttattggccaaagttg |
320 |
Q |
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| T |
51946219 |
gttgacatttcacatggcttccaatctgagaaatctcttgaagttgttggccaaagttg |
51946161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 157 - 414
Target Start/End: Original strand, 38285416 - 38285670
Alignment:
| Q |
157 |
ttttatagggcaagtaacttaaggtgcttacgacttgattcatgcgatagaatatcatatgaagggtggtgtgaagttgcaaagaaatttcccctgttag |
256 |
Q |
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| T |
38285416 |
ttttacagggcaagtaacttaaggcatatacaacttgcttcatgcatgagagtttcagatgaaggatggtgtgaagctgcaaagaaatttcccctgttag |
38285515 |
T |
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| Q |
257 |
aggagatttacatttcagaatgcttagaatctaatatatctcttgaagttattggccaaagttgtccttcgttgaaatcactaacattctatgggatgtc |
356 |
Q |
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| T |
38285516 |
aggagattgacatttcacacggcttccaaactaagatatctcttgaagttattggccaaaattgtcctttgttgaaatcactagtatataatgggatgtc |
38285615 |
T |
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| Q |
357 |
ggatggagaacgtttcacgtgtgatgataaggcatttattattgcaaaaacaatgcct |
414 |
Q |
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| T |
38285616 |
ctatggaggccgcagcaagtgcgatg---aggcatttattattgcaaagacaatgcct |
38285670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 273
Target Start/End: Complemental strand, 16644256 - 16644210
Alignment:
| Q |
227 |
gtgaagttgcaaagaaatttcccctgttagaggagatttacatttca |
273 |
Q |
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| T |
16644256 |
gtgaagttgcaaacaaatttccactgttagaggagcttgacatttca |
16644210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 273
Target Start/End: Complemental strand, 17618617 - 17618571
Alignment:
| Q |
227 |
gtgaagttgcaaagaaatttcccctgttagaggagatttacatttca |
273 |
Q |
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| T |
17618617 |
gtgaagttgcaaacaaatttccactgttagaggagcttgacatttca |
17618571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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