View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10113_low_11 (Length: 418)

Name: NF10113_low_11
Description: NF10113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10113_low_11
NF10113_low_11
[»] chr2 (6 HSPs)
chr2 (1-403)||(15870284-15870686)
chr2 (211-319)||(45196540-45196648)
chr2 (26-113)||(18835986-18836073)
chr2 (40-93)||(17511485-17511538)
chr2 (50-102)||(2010434-2010486)
chr2 (189-281)||(21979637-21979729)
[»] chr4 (3 HSPs)
chr4 (132-320)||(53074260-53074448)
chr4 (234-289)||(48435839-48435894)
chr4 (70-102)||(52906437-52906469)
[»] chr3 (4 HSPs)
chr3 (372-403)||(21754772-21754803)
chr3 (41-88)||(24882240-24882287)
chr3 (24-93)||(47364811-47364880)
chr3 (70-102)||(13806160-13806192)
[»] chr7 (1 HSPs)
chr7 (70-112)||(29906649-29906691)
[»] chr1 (1 HSPs)
chr1 (271-320)||(1495853-1495902)


Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 15870686 - 15870284
Alignment:
Q  1 ttcagaaacaacgaaaaaatgcaaaagaaaattgtgatgaaaatattcgatctatattagtttatgtcaattagttgaagtgaaaatgaaaaccgaaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15870686 ttcagaaacaacgaaaaaatgcaaaagaaaattgtgatgaaaatattcgatctatattagtttatgtcaattagttgaagtgaaaatgaaaaccgaaaac 15870587  T
Q  101 atgaaaagtaaactgctagaaatttgggaattaccttgttttcaagaagatttgtccaagctttgccgctcaagccatagcgaattgcaaacttgataat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15870586 atgaaaagtaaactgctagaaatttgggaattaccttgttttcaagaagatttgtccaagctttgccgctcaagccatagcgaattgcaaacttgataat 15870487  T
Q  201 gtcaagaggaatatagaaaatgatactgtaaagccagatgactcctgcccatccccaaccaattccttggattcttgcaaatccccagttggcatatact 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15870486 gtcaagaggaatatagaaaatgatactgtaaagccagatgactcctgcccatccccaaccaattccttggattcttgcaaatccccagttggcatatact 15870387  T
Q  301 gctattaatgtagcaatctgaaaagaaaaacaaaacctcaaaacaagtccaattggcatatacgcagttatactgatgaacatgtcataagttgttttca 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||    
T  15870386 gctattaatgtagcaatctgaaaagaaaaacaaaacctcaaaacaagtccaattcgcatatacgcagttataccgatgaacatatcataagttgttttca 15870287  T
Q  401 tat 403  Q
    |||    
T  15870286 tat 15870284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 319
Target Start/End: Original strand, 45196540 - 45196648
Alignment:
Q  211 atatagaaaatgatactgtaaagccagatgactcctgcccatccccaaccaattccttggattcttgcaaatccccagttggcatatactgctattaatg 310  Q
    ||||||||||| || ||||| ||||| ||||| |||||||| ||||| ||||||||||  || ||||||||  |||| || ||||| || ||||| | ||    
T  45196540 atatagaaaataatgctgtagagccaaatgacacctgcccaaccccatccaattcctttcatacttgcaaactcccaatttgcatacacagctatcagtg 45196639  T
Q  311 tagcaatct 319  Q
    | |||||||    
T  45196640 tggcaatct 45196648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 18835986 - 18836073
Alignment:
Q  26 agaaaattgtgatgaaaatattcgatctatattagtttatgtcaattagttgaagtgaaaatgaaaaccgaaaacatgaaaagtaaac 113  Q
    |||||||  |||||| |||| | | ||||||||| ||||| |  |||||||||||||||||| ||||| | || ||||||||||||||    
T  18835986 agaaaatgatgatgagaatagtgggtctatattattttatatttattagttgaagtgaaaataaaaacaggaatcatgaaaagtaaac 18836073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 17511538 - 17511485
Alignment:
Q  40 aaaatattcgatctatattagtttatgtcaattagttgaagtgaaaatgaaaac 93  Q
    ||||| || ||||||||||| |||||||  || |||||||||||||||||||||    
T  17511538 aaaatgttggatctatattattttatgtttatcagttgaagtgaaaatgaaaac 17511485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 2010434 - 2010486
Alignment:
Q  50 atctatattagtttatgtcaattagttgaagtgaaaatgaaaaccgaaaacat 102  Q
    ||||||||||  ||||||  ||||||||||| |||||||||||| ||||||||    
T  2010434 atctatattatattatgtttattagttgaagagaaaatgaaaacagaaaacat 2010486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 281
Target Start/End: Original strand, 21979637 - 21979729
Alignment:
Q  189 aaacttgataatgtcaagaggaatatagaaaatgatactgtaaagccagatgactcctgcccatccccaaccaattccttggattcttgcaaa 281  Q
    |||||||| ||||||||||||||| ||   ||| || ||||| | |||||| ||||| ||||||| ||| |||||||| | |||||| |||||    
T  21979637 aaacttgagaatgtcaagaggaatgtatgtaataatgctgtagatccagataactccagcccatctccacccaattccattgattctagcaaa 21979729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 132 - 320
Target Start/End: Original strand, 53074260 - 53074448
Alignment:
Q  132 taccttgttttcaagaagatttgtccaagctttgccgctcaagccatagcgaattgcaaacttgataatgtcaagaggaatatagaaaatgatactgtaa 231  Q
    ||||||||| || || |||||  ||||||| ||||| |||||    ||||| || |||||||| || | ||| || ||||||||||| |  || |||||     
T  53074260 taccttgttgtctaggagattgttccaagccttgccactcaatatgtagcggatggcaaacttcatcacgtcgagtggaatatagaagacaatgctgtag 53074359  T
Q  232 agccagatgactcctgcccatccccaaccaattccttggattcttgcaaatccccagttggcatatactgctattaatgtagcaatctg 320  Q
    |||||||| ||||||||||| ||||||||||||||||| |   |||| ||||||||||||||||||||||||||||  |||||||||||    
T  53074360 agccagattactcctgcccaaccccaaccaattccttgtacctttgcgaatccccagttggcatatactgctattatggtagcaatctg 53074448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 234 - 289
Target Start/End: Original strand, 48435839 - 48435894
Alignment:
Q  234 ccagatgactcctgcccatccccaaccaattccttggattcttgcaaatccccagt 289  Q
    |||||| ||||| ||||||| |||||||||||| | |||||| |||||||||||||    
T  48435839 ccagattactccagcccatctccaaccaattccattgattctagcaaatccccagt 48435894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 102
Target Start/End: Original strand, 52906437 - 52906469
Alignment:
Q  70 attagttgaagtgaaaatgaaaaccgaaaacat 102  Q
    |||||||||||||||||||||||| ||||||||    
T  52906437 attagttgaagtgaaaatgaaaacagaaaacat 52906469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 372 - 403
Target Start/End: Original strand, 21754772 - 21754803
Alignment:
Q  372 actgatgaacatgtcataagttgttttcatat 403  Q
    ||||||||||||||||||||||||||||||||    
T  21754772 actgatgaacatgtcataagttgttttcatat 21754803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 41 - 88
Target Start/End: Original strand, 24882240 - 24882287
Alignment:
Q  41 aaatattcgatctatattagtttatgtcaattagttgaagtgaaaatg 88  Q
    ||||||| ||||||||||| |||||||  |||||||||||||||||||    
T  24882240 aaatattagatctatattattttatgtttattagttgaagtgaaaatg 24882287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 47364811 - 47364880
Alignment:
Q  24 aaagaaaattgtgatgaaaatattcgatctatattagtttatgtcaattagttgaagtgaaaatgaaaac 93  Q
    ||||||||| |||| |||||||||  || ||| ||  |||||||  ||||||||||||||||||||||||    
T  47364811 aaagaaaatggtgaggaaaatattaaatttattttcttttatgtttattagttgaagtgaaaatgaaaac 47364880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 102
Target Start/End: Original strand, 13806160 - 13806192
Alignment:
Q  70 attagttgaagtgaaaatgaaaaccgaaaacat 102  Q
    |||||||||||||||||||||||| ||||||||    
T  13806160 attagttgaagtgaaaatgaaaacagaaaacat 13806192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 112
Target Start/End: Original strand, 29906649 - 29906691
Alignment:
Q  70 attagttgaagtgaaaatgaaaaccgaaaacatgaaaagtaaa 112  Q
    |||||||||||||||||||||||| | |||||||| |||||||    
T  29906649 attagttgaagtgaaaatgaaaacagtaaacatgagaagtaaa 29906691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 320
Target Start/End: Original strand, 1495853 - 1495902
Alignment:
Q  271 attcttgcaaatccccagttggcatatactgctattaatgtagcaatctg 320  Q
    ||||||||||||||||| || ||||| |||||||| ||||| ||||||||    
T  1495853 attcttgcaaatccccaattagcatacactgctataaatgttgcaatctg 1495902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University