View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10113_low_12 (Length: 407)
Name: NF10113_low_12
Description: NF10113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10113_low_12 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 379; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 746360 - 745954
Alignment:
| Q |
1 |
agcatcaatatgcttgctagggcaatagtaggagctttgtgcacttgaaaccataagagaatgttgagagctttgtcccaatcgaattggccaaaaccct |
100 |
Q |
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| T |
746360 |
agcatcaatatgcttgctagggtaatagtaggagctttgtgcactggaaaccataagagaatgttgagagctttgtcccaatcgaattggccaaaaccct |
746261 |
T |
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| Q |
101 |
aagggatttttatcacaaatattcatcaatggagagtaaattttctcttgagatatgttggtatgcatgagattgaagttggtacctgaatttgaggtca |
200 |
Q |
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| T |
746260 |
aagggatttttatcacaaatattcatcaatggagagtaaattttaacttgagatatgttggtatgcatgagattgaagttggtacctgaatttgaggtca |
746161 |
T |
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| Q |
201 |
agtaaggagaactaataaggttattgaccttgtatgattcatcttttcgcatattcatcttttgatcacatgcgtcaagcttagaatccaaaaacctaac |
300 |
Q |
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| T |
746160 |
agtaaggagaactaataaggttattgaccttgtatgattcatcttttcgcatattcatcttttgatcacatgcgtcaagcttagaatccaaaaacctaac |
746061 |
T |
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| Q |
301 |
aaatgacctcaattgttcatatccaaaggaattgtaagattcatcccaagttggatacttcatctttaacctctctttacgcactttgtaaatctccgat |
400 |
Q |
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| T |
746060 |
aaatgacctcaattgttcatttccaaaagaattgtaagattcatcccaagttggatacttcatctttaacctctctttacgcactttgtaaatctccaat |
745961 |
T |
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| Q |
401 |
tcaactt |
407 |
Q |
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| T |
745960 |
tcaactt |
745954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 32 - 224
Target Start/End: Complemental strand, 752259 - 752067
Alignment:
| Q |
32 |
gagctttgtgcacttgaaaccataagagaatgttgagagctttgtcccaatcgaattggccaaaaccctaagggatttttatcacaaatattcatcaatg |
131 |
Q |
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| T |
752259 |
gagctttgtgcagttgaaaccatatgagagggttgagagctttgtcctgatataagtggccaaaaccctaaagggtttttatcattgatattcatcaatg |
752160 |
T |
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| Q |
132 |
gagagtaaattttctcttgagatatgttggtatgcatgagattgaagttggtacctgaatttgaggtcaagtaaggagaactaataaggttat |
224 |
Q |
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| T |
752159 |
gtggataaatgtgtgcttgagacatgttgttttgcgggagattgaagtagctacttggatttgagtccaagtaaggagaactattaaggttat |
752067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 249 - 407
Target Start/End: Complemental strand, 752015 - 751857
Alignment:
| Q |
249 |
gcatattcatcttttgatcacatgcgtcaagcttagaatccaaaaacctaacaaatgacctcaattgttcatatccaaaggaattgtaagattcatccca |
348 |
Q |
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| T |
752015 |
gcatattcatctttagattgcatgcatcaagcttaaaatccaagatgctagcaaataaccttaattgttcatcttcaagaaaattgaatgattcatccca |
751916 |
T |
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| Q |
349 |
agttggatacttcatctttaacctctctttacgcactttgtaaatctccgattcaactt |
407 |
Q |
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| T |
751915 |
agtttgatacttcatcttaaacttctctttgcgcactttggaaatctcaaattcaactt |
751857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 243 - 396
Target Start/End: Original strand, 7327412 - 7327565
Alignment:
| Q |
243 |
cttttcgcatattcatcttttgatcacatgcgtcaagcttagaatccaaaaacctaacaaatgacctcaattgttcatatccaaaggaattgtaagattc |
342 |
Q |
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| T |
7327412 |
cttttagcatatgcatcctttgattacaagcatcaagcttggaatccaacatgctagcaaatgacctcacttgttccactccaagtgaattgtaagattc |
7327511 |
T |
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| Q |
343 |
atcccaagttggatacttcatctttaacctctctttacgcactttgtaaatctc |
396 |
Q |
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| T |
7327512 |
atcccaggatggatacatcatctttatcttctctttgcgcactttggaaatctc |
7327565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 179
Target Start/End: Original strand, 7327168 - 7327321
Alignment:
| Q |
26 |
tagtaggagctttgtgcacttgaaaccataagagaatgttgagagctttgtcccaatcgaattggccaaaaccctaagggatttttatcacaaatattca |
125 |
Q |
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| T |
7327168 |
tagtatgagctttgcgcattggaaatcatagaagaaggttgagagctttgtccgagttgaagttgccaaaaccctaatggggttttatcattaatattca |
7327267 |
T |
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| Q |
126 |
tcaatggagagtaaattttctcttgagatatgttggtatgcatgagattgaagt |
179 |
Q |
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| T |
7327268 |
tcaatggaggatgaatttttgcttcaaacatgttgttttgcatgagattgaagt |
7327321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 752299 - 752251
Alignment:
| Q |
28 |
gtaggagctttgtgcacttgaaaccataagagaatgttgagagctttgt |
76 |
Q |
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|||| ||||||||||||| ||||||||| ||||| |||||||||||||| |
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| T |
752299 |
gtagaagctttgtgcactagaaaccataggagaaggttgagagctttgt |
752251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 58 - 242
Target Start/End: Original strand, 51792290 - 51792474
Alignment:
| Q |
58 |
agaatgttgagagctttgtcccaatcgaattggccaaaaccctaagggatttttatcacaaatattcatcaatggagagtaaattttctcttgagatatg |
157 |
Q |
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| T |
51792290 |
agaaggttgagagctttgtcccgattgaagtggccaaaaccctaaggggtttttatcactaatattcatcattggaggataagtttgtgcttgagacatg |
51792389 |
T |
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| Q |
158 |
ttggtatgcatgagattgaagttggtacctgaatttgaggtcaagtaaggagaactaataaggttattgaccttgtatgattcat |
242 |
Q |
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| T |
51792390 |
gaattttgcatgagattgaagtagtaacttggatttggggtcaaggaaggagtactgataagtttatctaccttgtgtgattcat |
51792474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 329 - 388
Target Start/End: Original strand, 51792588 - 51792647
Alignment:
| Q |
329 |
gaattgtaagattcatcccaagttggatacttcatctttaacctctctttacgcactttg |
388 |
Q |
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| T |
51792588 |
gaattgaaagattcattccaagttggatacatcatctttaacttctctttacgcactttg |
51792647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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