View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10113_low_14 (Length: 399)
Name: NF10113_low_14
Description: NF10113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10113_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 101; Significance: 6e-50; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 12298672 - 12298816
Alignment:
| Q |
1 |
gatagttagcagtattacttgatgtacaagttacttagtatagcttagctttctaattgagattagcatgtaattaggagctttgtatccatataaatac |
100 |
Q |
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| T |
12298672 |
gatagctagcaggattacttgatgtataagttacttagtatagcttagtttactaattgagattagcatctaattgggagctttgtattcatataaatac |
12298771 |
T |
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| Q |
101 |
tccttctacctgcttttccatctatgagaaatgagagtttattca |
145 |
Q |
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| T |
12298772 |
tccttgtacttgcttttccatctaggagaaatgagagtttattca |
12298816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 61 - 164
Target Start/End: Original strand, 31962830 - 31962933
Alignment:
| Q |
61 |
gattagcatgtaattaggagctttgtatccatataaatactccttctacctgcttttccatctatgagaaatgagagtttattcattctacaattttcat |
160 |
Q |
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|||||||||| |||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| | || |||||| |
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| T |
31962830 |
gattagcatgaaattaggagctttgtatctctataaatactccttgtacttgcttttccatctatgagaaatgagagtttattcattttgcacatttcat |
31962929 |
T |
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| Q |
161 |
aaca |
164 |
Q |
| |
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|||| |
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| T |
31962930 |
aaca |
31962933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 67 - 147
Target Start/End: Original strand, 31960931 - 31961011
Alignment:
| Q |
67 |
catgtaattaggagctttgtatccatataaatactccttctacctgcttttccatctatgagaaatgagagtttattcatt |
147 |
Q |
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| T |
31960931 |
catgtaattaggagccttgtatctctataaatactccttgtacttgcttttccatctatgagaaatgagagtttattcatt |
31961011 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 14 - 162
Target Start/End: Original strand, 28557779 - 28557926
Alignment:
| Q |
14 |
attacttgatgtacaagttacttagtatagcttagctttctaattgagattagcatgtaattaggagctttgtatccatataaatactccttctacctgc |
113 |
Q |
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| T |
28557779 |
attacttgatgtacaagttactatgtttagcttag-ttaataattgagattagcatgtaattaggagctttgtacactaataaatactccatgtacttgt |
28557877 |
T |
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| Q |
114 |
ttttccatctatgagaaatgagagtttattcattctacaattttcataa |
162 |
Q |
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| | ||||| ||||| ||||||| |||| |||| |||| |||||||| |
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| T |
28557878 |
taattcatctgtgagacatgagagcttatccattttacacatttcataa |
28557926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 147
Target Start/End: Original strand, 28562473 - 28562605
Alignment:
| Q |
15 |
ttacttgatgtacaagttacttagtatagcttagctttctaattgagattagcatgtaattaggagctttgtat-cca-tataaatactccttctacctg |
112 |
Q |
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||||||||||||||| ||||| || || ||||| || |||||||||||||||||| |||||||||||||||| ||| |||||||||||| | ||| || |
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| T |
28562473 |
ttacttgatgtacaatttactatgtttaacttag-ttaataattgagattagcatgt-attaggagctttgtataccattataaatactccatgtacttg |
28562570 |
T |
|
| Q |
113 |
cttttccatctatgagaaatgagagtttattcatt |
147 |
Q |
| |
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| | |||||||| |||||||||| |||| |||| |
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| T |
28562571 |
ttaattcatctatgtgaaatgagagcttatccatt |
28562605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 15 - 162
Target Start/End: Original strand, 45094660 - 45094807
Alignment:
| Q |
15 |
ttacttgatgtacaagttacttagtatagcttagctttctaattgagattagcatgtaattaggagctttgtatccatataaatactccttctacctgct |
114 |
Q |
| |
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|||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| | ||| |||| |
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| T |
45094660 |
ttacttgaagtacaagttacttaatatagcttagcttactaattgagattagcatgtaattaggagctttgtattcatataaatactttatgtacttgct |
45094759 |
T |
|
| Q |
115 |
tttccatctatgagaaatgagagtttattcattctacaattttcataa |
162 |
Q |
| |
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||||||||||||| ||||||||||||||||||| |||| ||| ||||| |
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| T |
45094760 |
tttccatctatgaaaaatgagagtttattcattttacactttccataa |
45094807 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 221 - 330
Target Start/End: Complemental strand, 14719016 - 14718911
Alignment:
| Q |
221 |
caaatcctttaaagcttgaacataactttcttataaataatataggatctgtttgatccccagaggactgatcgatcgattcacttcataaaatctgttt |
320 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||| |||||||||| |
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| T |
14719016 |
caaatcctttaaagcttgaacataactttcttataaataatataggatctgtttgattcccagagggc----cgatcgattcacttcatcaaatctgttt |
14718921 |
T |
|
| Q |
321 |
ttcagctttt |
330 |
Q |
| |
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||||| |||| |
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| T |
14718920 |
ttcagttttt |
14718911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 14720244 - 14720189
Alignment:
| Q |
168 |
cttaccttggatatgcccgacaaatgtttcccgtgttgaagaagatgttcgcccaa |
223 |
Q |
| |
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||||||||||| | ||||||||||||||| |||||| ||||||||||||| |||| |
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|
| T |
14720244 |
cttaccttggagacgcccgacaaatgttttccgtgtgaaagaagatgttcggccaa |
14720189 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 18962470 - 18962352
Alignment:
| Q |
14 |
attacttgatgtacaagttacttagtatagcttagctttctaattgagattagcatgtaattaggagctttgtatccatataaatactccttctacctgc |
113 |
Q |
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||||||||||||||||||||||||| ||| ||||| || |||||||||||| ||||||||||||||||||||| | |||||||||||||| || ||| |
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| T |
18962470 |
attacttgatgtacaagttacttagcataacttag-ttaataattgagattaacatgtaattaggagctttgtactcttataaatactccttgtagttgc |
18962372 |
T |
|
| Q |
114 |
ttttccatctatgagaaatg |
133 |
Q |
| |
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|| | ||||||||||||||| |
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| T |
18962371 |
ttattcatctatgagaaatg |
18962352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 275
Target Start/End: Original strand, 10942787 - 10942839
Alignment:
| Q |
223 |
aatcctttaaagcttgaacataactttcttataaataatataggatctgtttg |
275 |
Q |
| |
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|||||||||||||||| |||||||||||||| ||||| |||||| ||||||| |
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|
| T |
10942787 |
aatcctttaaagcttgcacataactttcttagaaatactatagggcctgtttg |
10942839 |
T |
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