View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10113_low_15 (Length: 384)
Name: NF10113_low_15
Description: NF10113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10113_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 289 - 372
Target Start/End: Complemental strand, 10396884 - 10396801
Alignment:
| Q |
289 |
attattattttaatgttaaagagaaaggaaaataaaaaatctccaaaattgatcctcataatcgtggcagcatatgattctagt |
372 |
Q |
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| T |
10396884 |
attattattttaatgttaaagagaaaggaaaataaaaaatctccaaaattgatcctcataatcgtggcagcatatgattctagt |
10396801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 15 - 156
Target Start/End: Complemental strand, 10397325 - 10397184
Alignment:
| Q |
15 |
tggacatcaaacgatgattctagttttttggaaactttaannnnnnngacaaatctacctttgatgttctataaaatgttacttaannnnnnnnnnnnaa |
114 |
Q |
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| T |
10397325 |
tggacattaaaagatgattctagttttttggaaactttaatttttttgacaaatctacctttgatgttctataaaatgttacttatatttttttttttaa |
10397226 |
T |
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| Q |
115 |
tgttacttaatgattaatgtgattttaattagatgcatgtgt |
156 |
Q |
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| T |
10397225 |
tgttacttaatgatgaatgtgattttaattagatgcatgtgt |
10397184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 289 - 372
Target Start/End: Complemental strand, 48069322 - 48069238
Alignment:
| Q |
289 |
attattattttaatgttaaagagaaaggaaaataaaaaat-ctccaaaattgatcctcataatcgtggcagcatatgattctagt |
372 |
Q |
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|||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48069322 |
attattattttaatattaaagagaaaggcaaataaaaaatgctccaaaattgatcctcataatcgtggcagcatatgattctagt |
48069238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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