View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10113_low_16 (Length: 380)
Name: NF10113_low_16
Description: NF10113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10113_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 15 - 365
Target Start/End: Original strand, 337437 - 337787
Alignment:
| Q |
15 |
ggtagtgaaaatgaatcaattggtaacaagtttctaagagatgctgcattcaatctctttgtagcggggagagataccataacttccgcgcttacatggt |
114 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
337437 |
ggtagtgaaagtgaatcaattggtaacaagtttctaagagatgctgcattcaatctctttgtagcggggagagataccataacttccgcgcttacatggt |
337536 |
T |
|
| Q |
115 |
tattttatcttgtcgctacacatcctttggtggaagccaagattgttgaagagataaaagaaaattttggacacaaagagaagccttggattttaagtgt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
337537 |
tattttatcttgtcgctacacatcctttggtggaagccaagattgttgaagagataaaagaaaattttggacacaaagagaagccttggattttaagtgt |
337636 |
T |
|
| Q |
215 |
tgatgatgtgaaaaagcttgtttatcttcacggcgctatatgtgaggcgttaaggctttttccgcctataccttttgagagaaagcaagcaattgaagcc |
314 |
Q |
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|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
337637 |
tgatgaggtgaaaaagcttgtttatcttcacggcgctatatgtgaggcgttaaggctttttccgcctataccttttgagagaaagcaagcaattgaagcc |
337736 |
T |
|
| Q |
315 |
gatatacttccaagtggtcatcatgttttcccgaataagatggtatttttt |
365 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
337737 |
gatatacttccaagtggtcatcatgttttcccgaataagatggtatttttt |
337787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 361
Target Start/End: Original strand, 341475 - 341821
Alignment:
| Q |
15 |
ggtagtgaaaatgaatcaattggtaacaagtttctaagagatgctgcattcaatctctttgtagcggggagagataccataacttccgcgcttacatggt |
114 |
Q |
| |
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|||||||||| |||| || ||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||| |
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|
| T |
341475 |
ggtagtgaaagtgaagcacttggtgacaagtttctaagagatgctgcattcaatctctttgtagctggaagagataccataacttctgcgcttacatggc |
341574 |
T |
|
| Q |
115 |
tattttatcttgtcgctacacatcctttggtggaagccaagattgttgaagagataaaagaaaattttggacacaaagagaagccttggattttaagtgt |
214 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||||||||||||||| |||||||||| ||||||||||| ||| |||||||||||||||||||||||||||| |
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|
| T |
341575 |
tattttatcttgttgctacacaccctttagtggaagccaagattcttgaagagatcaaagaaaatttcggatacaaagagaagccttggattttaagtgt |
341674 |
T |
|
| Q |
215 |
tgatgatgtgaaaaagcttgtttatcttcacggcgctatatgtgaggcgttaaggctttttccgcctataccttttgagagaaagcaagcaattgaagcc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||| || |||||||||||||||||| |||| || || || |
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| T |
341675 |
tgatgatgtgaaaaagcttgtttatcttcatggtgctatatgtgaggcattaaggctttttccaccaataccttttgagagaaaggaagcggttaaaccc |
341774 |
T |
|
| Q |
315 |
gatatacttccaagtggtcatcatgttttcccgaataagatggtatt |
361 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||| ||| |||| |
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|
| T |
341775 |
gatatacttccaagtggtcatcatgtttatccgaataatatgatatt |
341821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 333185 - 333329
Alignment:
| Q |
17 |
tagtgaaaatgaatcaattggtaacaagtttctaagagatgctgcattcaatctctttgtagcggggagagataccataacttccgcgcttacatggtta |
116 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
333185 |
tagtgaaagtgaatcaattatcgacaagtttctaagagatgctgcattcaatctctttgtagcggggagagataccataacttccgcccttacatggtta |
333284 |
T |
|
| Q |
117 |
ttttatcttgtcgctacacatcctttggtggaagccaagattgtt |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
333285 |
ttttatcttgtcgctacacatcctttggtggaagccaagattgtt |
333329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 40 - 335
Target Start/End: Original strand, 377213 - 377511
Alignment:
| Q |
40 |
acaagtttctaagagatgctgcattcaatctctttgtagcggggagagataccataacttccgcgcttacatggttattttatcttgtcgctacacatcc |
139 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| || |||||||| |||||||| ||||||||||||||||||||||| || ||||||||||| |
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|
| T |
377213 |
acaagtttctaagagatgctgctttcaatctctttgtagccggaagagatactataacttcagcgcttacatggttattttatctcgttgctacacatcc |
377312 |
T |
|
| Q |
140 |
tttggtggaagccaagattgttgaagagataaaagaaaattttggacacaaagaga---agccttggattttaagtgttgatgatgtgaaaaagcttgtt |
236 |
Q |
| |
|
||| || ||| |||||||| |||||||||| |||||| |||||||| || | | | | || ||| | |||||||| ||||| ||||| ||| |
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|
| T |
377313 |
tttagtagaaaccaagattcttgaagagattaaagaacattttggaaccattaatattgatcaaaagaagttaggggttgatgaagtgaagaagctagtt |
377412 |
T |
|
| Q |
237 |
tatcttcacggcgctatatgtgaggcgttaaggctttttccgcctataccttttgagagaaagcaagcaattgaagccgatatacttccaagtggtcat |
335 |
Q |
| |
|
|||||||| || |||||||||||||| ||||||||||||| |||||||| |||||| | ||| |||||||| ||| ||| ||||||||||||||||| |
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|
| T |
377413 |
tatcttcatggtgctatatgtgaggctataaggctttttcctcctataccctttgagcgcaagaaagcaattaaaggtgatgtacttccaagtggtcat |
377511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 54 - 331
Target Start/End: Complemental strand, 355931 - 355654
Alignment:
| Q |
54 |
gatgctgcattcaatctctttgtagcggggagagataccataacttccgcgcttacatggttattttatcttgtcgctacacatcctttggtggaagcca |
153 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||| | || ||||| | |||||||| ||||| ||||| || | |
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|
| T |
355931 |
gatgttgcattcaatctctttgtagcggggagagatactataacttcagcgcttacatggctcttctatctcattgctacacaccctttagtggaggcta |
355832 |
T |
|
| Q |
154 |
agattgttgaagagataaaagaaaattttggacacaaagagaagccttggattttaagtgttgatgatgtgaaaaagcttgtttatcttcacggcgctat |
253 |
Q |
| |
|
||||| |||| ||||| |||||||||||||| || | | || ||| | ||||||| |||||||||| ||||||||||| || ||||| |
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|
| T |
355831 |
agattcttgaggagattaaagaaaattttgggaccatcaatattgaaaagaaattagggattgatgagttgaaaaagctagtttatcttcatggtgctat |
355732 |
T |
|
| Q |
254 |
atgtgaggcgttaaggctttttccgcctataccttttgagagaaagcaagcaattgaagccgatatacttccaagtgg |
331 |
Q |
| |
|
|||||| || ||||||||||||| || ||||| ||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
355731 |
atgtgaagctctaaggctttttcctccaataccctttgagagaaagcaagcaattaaaggtgatatacttccaagtgg |
355654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 42 - 331
Target Start/End: Complemental strand, 347284 - 346995
Alignment:
| Q |
42 |
aagtttctaagagatgctgcattcaatctctttgtagcggggagagataccataacttccgcgcttacatggttattttatcttgtcgctacacatcctt |
141 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||| ||||||||||| |||||||| |||||||||||| | || |||||| | |||||||| |||| |
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|
| T |
347284 |
aagtttctaagagatgtcgcattcaatctttttgtagccgggagagatactataacttcagcgcttacatggcttttatatcttattgctacacaccctt |
347185 |
T |
|
| Q |
142 |
tggtggaagccaagattgttgaagagataaaagaaaattttggacacaaagagaagccttggattttaagtgttgatgatgtgaaaaagcttgtttatct |
241 |
Q |
| |
|
| ||||| || |||||| |||| |||| |||||||||||||| || | | || ||| | || |||| |||||||||| |||||||| |
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|
| T |
347184 |
tagtggaggctaagattcttgagcagattaaagaaaattttgggaccattaacattgaaaagaaattagggatttatgagttgaaaaagctagtttatct |
347085 |
T |
|
| Q |
242 |
tcacggcgctatatgtgaggcgttaaggctttttccgcctataccttttgagagaaagcaagcaattgaagccgatatacttccaagtgg |
331 |
Q |
| |
|
||| || ||||||||||| || ||||||||||||| || ||||| ||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
347084 |
tcatggtgctatatgtgaagctctaaggctttttcctccaataccctttgagagaaagcaagcaattaaaggtgatatacttccaagtgg |
346995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 12963809 - 12963873
Alignment:
| Q |
228 |
aagcttgtttatcttcacggcgctatatgtgaggcgttaaggctttttccgcctataccttttga |
292 |
Q |
| |
|
||||||||||||||||| || ||||| ||||| || |||||||||| ||| |||||||| ||||| |
|
|
| T |
12963809 |
aagcttgtttatcttcatggagctatttgtgaagctttaaggctttatcctcctataccatttga |
12963873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 19279102 - 19279166
Alignment:
| Q |
228 |
aagcttgtttatcttcacggcgctatatgtgaggcgttaaggctttttccgcctataccttttga |
292 |
Q |
| |
|
||||| ||||||||||| || ||||||||||| || |||||||||| ||| ||| |||| ||||| |
|
|
| T |
19279102 |
aagctagtttatcttcatggagctatatgtgaagccttaaggctttatccacctgtaccatttga |
19279166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 12164630 - 12164581
Alignment:
| Q |
132 |
acacatcctttggtggaagccaagattgttgaagagataaaagaaaattt |
181 |
Q |
| |
|
|||||||||||| | ||||| |||||| |||||||||| ||||||||||| |
|
|
| T |
12164630 |
acacatcctttgattgaagctaagattcttgaagagatcaaagaaaattt |
12164581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 12176155 - 12176106
Alignment:
| Q |
132 |
acacatcctttggtggaagccaagattgttgaagagataaaagaaaattt |
181 |
Q |
| |
|
||||| ||||| || |||||||||||| |||||||||| ||||||||||| |
|
|
| T |
12176155 |
acacacccttttgttgaagccaagattcttgaagagatcaaagaaaattt |
12176106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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