View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10113_low_18 (Length: 370)

Name: NF10113_low_18
Description: NF10113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10113_low_18
NF10113_low_18
[»] chr4 (15 HSPs)
chr4 (1-355)||(3249786-3250140)
chr4 (15-99)||(30024600-30024684)
chr4 (7-82)||(19422335-19422410)
chr4 (15-98)||(49219040-49219123)
chr4 (44-90)||(24193494-24193540)
chr4 (15-90)||(3155511-3155587)
chr4 (16-56)||(27876239-27876279)
chr4 (32-99)||(41241647-41241714)
chr4 (33-92)||(54986329-54986388)
chr4 (15-65)||(3176208-3176258)
chr4 (40-82)||(27321942-27321984)
chr4 (30-99)||(485981-486050)
chr4 (31-76)||(11808192-11808237)
chr4 (7-100)||(24443937-24444030)
chr4 (16-80)||(35743223-35743287)
[»] chr8 (22 HSPs)
chr8 (40-99)||(12496578-12496637)
chr8 (16-91)||(39392748-39392823)
chr8 (33-90)||(31884503-31884560)
chr8 (15-99)||(14482102-14482186)
chr8 (16-88)||(36643958-36644030)
chr8 (7-90)||(34563159-34563242)
chr8 (41-99)||(2107438-2107496)
chr8 (16-77)||(40728505-40728566)
chr8 (16-80)||(38561645-38561709)
chr8 (15-99)||(40280291-40280375)
chr8 (35-99)||(43208239-43208303)
chr8 (15-90)||(2364559-2364634)
chr8 (16-59)||(12224986-12225029)
chr8 (20-99)||(35453714-35453793)
chr8 (18-99)||(4762417-4762492)
chr8 (16-98)||(29699155-29699237)
chr8 (22-99)||(12972756-12972833)
chr8 (63-92)||(31875693-31875722)
chr8 (7-100)||(35869736-35869829)
chr8 (16-56)||(26820142-26820182)
chr8 (16-96)||(34788514-34788594)
chr8 (15-99)||(41336731-41336815)
[»] chr6 (18 HSPs)
chr6 (16-99)||(32975878-32975961)
chr6 (30-99)||(33068662-33068731)
chr6 (20-99)||(2206490-2206569)
chr6 (15-70)||(24836285-24836340)
chr6 (15-89)||(32206106-32206181)
chr6 (15-87)||(4248870-4248942)
chr6 (30-81)||(5554866-5554917)
chr6 (16-99)||(9833184-9833267)
chr6 (32-99)||(28130028-28130095)
chr6 (40-99)||(31337923-31337982)
chr6 (16-90)||(2514611-2514685)
chr6 (18-64)||(34544539-34544585)
chr6 (15-100)||(3217276-3217361)
chr6 (33-90)||(31668789-31668846)
chr6 (15-99)||(8349750-8349834)
chr6 (15-87)||(22742278-22742350)
chr6 (14-82)||(28531626-28531694)
chr6 (35-99)||(33027543-33027607)
[»] chr2 (20 HSPs)
chr2 (19-99)||(15173426-15173506)
chr2 (16-99)||(15171150-15171233)
chr2 (16-99)||(28803593-28803676)
chr2 (19-90)||(43431534-43431605)
chr2 (44-99)||(43808476-43808531)
chr2 (17-99)||(42817464-42817546)
chr2 (30-99)||(13869196-13869265)
chr2 (18-75)||(40672885-40672942)
chr2 (16-91)||(25790036-25790109)
chr2 (30-82)||(32694130-32694181)
chr2 (20-95)||(5867282-5867357)
chr2 (34-80)||(35809852-35809898)
chr2 (17-90)||(33197327-33197400)
chr2 (41-90)||(43965242-43965291)
chr2 (15-83)||(3423854-3423922)
chr2 (63-95)||(6561271-6561303)
chr2 (30-82)||(10150672-10150724)
chr2 (9-85)||(19629213-19629289)
chr2 (15-87)||(31461350-31461422)
chr2 (15-90)||(39567811-39567887)
[»] chr5 (15 HSPs)
chr5 (17-99)||(20982223-20982305)
chr5 (7-99)||(6738485-6738577)
chr5 (30-99)||(26516198-26516267)
chr5 (40-90)||(40534103-40534153)
chr5 (16-97)||(6739774-6739855)
chr5 (30-90)||(4991044-4991104)
chr5 (10-99)||(10363060-10363153)
chr5 (40-90)||(19093957-19094007)
chr5 (16-82)||(29117017-29117083)
chr5 (15-61)||(42583087-42583133)
chr5 (50-99)||(33961603-33961652)
chr5 (30-75)||(40097504-40097549)
chr5 (63-99)||(6725137-6725173)
chr5 (17-73)||(18704124-18704179)
chr5 (15-90)||(42582820-42582896)
[»] scaffold0024 (1 HSPs)
scaffold0024 (15-90)||(27485-27560)
[»] chr7 (18 HSPs)
chr7 (15-90)||(49060449-49060524)
chr7 (20-78)||(44241781-44241839)
chr7 (15-90)||(1431394-1431469)
chr7 (7-82)||(29574679-29574754)
chr7 (16-90)||(18749897-18749971)
chr7 (17-90)||(25511536-25511609)
chr7 (30-99)||(28844386-28844455)
chr7 (15-90)||(42656423-42656499)
chr7 (30-81)||(10079441-10079492)
chr7 (15-90)||(26024078-26024153)
chr7 (40-87)||(27389295-27389342)
chr7 (17-99)||(30133951-30134031)
chr7 (6-99)||(36532254-36532344)
chr7 (16-90)||(31341103-31341177)
chr7 (30-76)||(39551649-39551695)
chr7 (53-90)||(40371720-40371757)
chr7 (15-83)||(27121672-27121740)
chr7 (15-55)||(39591553-39591593)
[»] chr3 (12 HSPs)
chr3 (44-90)||(9279441-9279487)
chr3 (30-90)||(16790189-16790249)
chr3 (16-59)||(24605103-24605146)
chr3 (31-95)||(36445636-36445700)
chr3 (3-75)||(52450126-52450198)
chr3 (16-86)||(38462194-38462264)
chr3 (17-90)||(41028939-41029012)
chr3 (30-95)||(43116529-43116594)
chr3 (15-59)||(1395611-1395655)
chr3 (19-90)||(27888693-27888765)
chr3 (16-84)||(44284145-44284213)
chr3 (15-59)||(48364965-48365009)
[»] chr1 (17 HSPs)
chr1 (17-99)||(4200129-4200211)
chr1 (15-89)||(7274025-7274099)
chr1 (16-86)||(23895249-23895319)
chr1 (16-58)||(42556718-42556760)
chr1 (30-100)||(46504318-46504388)
chr1 (15-99)||(49516969-49517054)
chr1 (30-82)||(11218183-11218235)
chr1 (47-99)||(49282822-49282874)
chr1 (20-83)||(16982027-16982090)
chr1 (41-99)||(30237857-30237916)
chr1 (15-74)||(36641800-36641859)
chr1 (34-88)||(26679185-26679239)
chr1 (17-82)||(4202217-4202282)
chr1 (41-90)||(47885120-47885169)
chr1 (14-99)||(49557041-49557126)
chr1 (63-99)||(15558112-15558148)
chr1 (19-99)||(17420103-17420183)
[»] scaffold0590 (1 HSPs)
scaffold0590 (16-99)||(1161-1244)
[»] scaffold0275 (1 HSPs)
scaffold0275 (16-99)||(2731-2814)
[»] scaffold0455 (1 HSPs)
scaffold0455 (32-99)||(8615-8682)
[»] scaffold0085 (1 HSPs)
scaffold0085 (63-99)||(26175-26211)


Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 3249786 - 3250140
Alignment:
Q  1 agtatttgaaaagtatttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaata 100  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||    
T  3249786 agtatttgaaaagtatttgactttatttcatcttttatcatagaaataacttacacatacacacttatatgataagcgcttatgctataaaaacttaata 3249885  T
Q  101 tgtccaaagaagacctaaaaagcattctagtaataaagataaaggtgttcaatctaaataaaatcaaatccttataaggaagagataaaacactttattc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3249886 tgtccaaagaagacctaaaaagcattctagtaataaagataaaggtgttcaatctaaataaaatcaaatccttataaggaagagataaaacactttattc 3249985  T
Q  201 taaggttgtctgataaactacaactacgaaggacatgatatcaacaacaattgaaagtttaatgtgcttttggatttcagacatcgacaatgtatatcaa 300  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3249986 taaggttgtctgataagctacaactaagaaggacatgatatcaacaacaattgaaagtttaatgtgcttttggatttcagacatcgacaatgtatatcaa 3250085  T
Q  301 atatcaatgtcctaatcttcaacaaacttcaacaactaggaacaagtgttgcttt 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3250086 atatcaatgtcctaatcttcaacaaacttcaacaactaggaacaagtgttgcttt 3250140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 30024684 - 30024600
Alignment:
Q  15 atttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaat 99  Q
    |||| |||||| || ||||||||| ||||||||||||||| ||||  |||||||||||||| ||||| | |||||||||||||||    
T  30024684 attttactttattttatcttttgttatagaaataacttatgcataagtacttatatgataaacgcttctactataaacacttaat 30024600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 19422410 - 19422335
Alignment:
Q  7 tgaaaagtatttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgctta 82  Q
    |||||| | |||||||||| |  ||||||||| ||||||||||||||||||||   | ||||||||||||||||||    
T  19422410 tgaaaaatgtttgactttattatatcttttgttatagaaataacttatacataagcatttatatgataagcgctta 19422335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 49219123 - 49219040
Alignment:
Q  15 atttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaa 98  Q
    ||||||||||| || || |||||| ||||||||||||||||| ||   ||| |||||||||||||  ||||||||| |||||||    
T  49219123 atttgactttattttatattttgttatagaaataacttatacctaaccactcatatgataagcgccaatgctataagcacttaa 49219040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 24193540 - 24193494
Alignment:
Q  44 aaataacttatacatacatacttatatgataagcgcttatgctataa 90  Q
    ||||||||||||||||  ||||||||||||||||| |||||||||||    
T  24193540 aaataacttatacataagtacttatatgataagcgtttatgctataa 24193494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 3155587 - 3155511
Alignment:
Q  15 atttgactttacttcatcttttgtcatagaaataacttatacatacatacttat-atgataagcgcttatgctataa 90  Q
    |||| |||||| || ||||||||  ||||||||| ||||||||||||| ||||| ||||||||||||| | ||||||    
T  3155587 atttaactttattttatcttttgctatagaaatagcttatacatacatgcttatcatgataagcgcttgtactataa 3155511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 27876279 - 27876239
Alignment:
Q  16 tttgactttacttcatcttttgtcatagaaataacttatac 56  Q
    ||||||||||||| ||||||||||||| |||||||||||||    
T  27876279 tttgactttactttatcttttgtcataaaaataacttatac 27876239  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 41241647 - 41241714
Alignment:
Q  32 cttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaat 99  Q
    ||||||| ||||||||| |||| ||| |  |||||||||||||  |||||||||||||| ||||||||    
T  41241647 cttttgttatagaaatagcttaaacacaagtacttatatgatagacgcttatgctataagcacttaat 41241714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 54986388 - 54986329
Alignment:
Q  33 ttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaac 92  Q
    |||||| ||||||||| |||||||||| | |||||||||||  ||| |||||||||||||    
T  54986388 ttttgttatagaaatagcttatacataaaaacttatatgattggcgtttatgctataaac 54986329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 3176208 - 3176258
Alignment:
Q  15 atttgactttacttcatcttttgtcatagaaataacttatacatacatact 65  Q
    |||||| |||| || ||||||||| |||||||||||||||||||| |||||    
T  3176208 atttgattttatttaatcttttgttatagaaataacttatacataaatact 3176258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 27321942 - 27321984
Alignment:
Q  40 atagaaataacttatacatacatacttatatgataagcgctta 82  Q
    |||||||||||||||||||| | ||||||||||||||| ||||    
T  27321942 atagaaataacttatacataaacacttatatgataagccctta 27321984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 486050 - 485981
Alignment:
Q  30 atcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaat 99  Q
    |||||||||  |||||||| | ||||||||   |||| ||||||||||||||||||||||| | ||||||    
T  486050 atcttttgttttagaaatagcatatacataagcacttttatgataagcgcttatgctataagcgcttaat 485981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 11808237 - 11808192
Alignment:
Q  31 tcttttgtcatagaaataacttatacatacatacttatatgataag 76  Q
    |||||| |||||||||| ||||||||||| || |||||||||||||    
T  11808237 tcttttatcatagaaattacttatacataaatgcttatatgataag 11808192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 24444030 - 24443937
Alignment:
Q  7 tgaaaagtatttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaata 100  Q
    |||||| | ||||| |||| || || ||||||  |||||||  ||||||||||   |||||||||||||| ||||||||||||| | |||||||    
T  24444030 tgaaaattgtttgaatttattttatattttgttgtagaaatcgcttatacataagaacttatatgataagtgcttatgctataagcgcttaata 24443937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 35743287 - 35743223
Alignment:
Q  16 tttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgct 80  Q
    |||| ||||| || ||||||||| ||||||||||||| |||||  | || |||||||||||||||    
T  35743287 tttgcctttattttatcttttgttatagaaataacttgtacatcaacacatatatgataagcgct 35743223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 12496637 - 12496578
Alignment:
Q  40 atagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaat 99  Q
    ||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||    
T  12496637 atagaaataacttatacatacgtacttatatgataagcgttaatgctataaacacttaat 12496578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 39392748 - 39392823
Alignment:
Q  16 tttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaa 91  Q
    |||||||||| || ||||||||| |||||||||  |||||||||   ||||||||||||||| |||||||||||||    
T  39392748 tttgactttattttatcttttgttatagaaatagtttatacatagccacttatatgataagcacttatgctataaa 39392823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 31884560 - 31884503
Alignment:
Q  33 ttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataa 90  Q
    |||||| ||||||||||||||||||||   |||| |||||||||||||||||||||||    
T  31884560 ttttgttatagaaataacttatacatatgcacttgtatgataagcgcttatgctataa 31884503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 14482186 - 14482102
Alignment:
Q  15 atttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaat 99  Q
    ||||||||||| || ||||||||| |||||||||  |||||||||   ||||||||||||||| || |||||||||  |||||||    
T  14482186 atttgactttattttatcttttgttatagaaatagtttatacataagcacttatatgataagcactaatgctataagaacttaat 14482102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 36643958 - 36644030
Alignment:
Q  16 tttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctat 88  Q
    ||||||||||||  ||||||| | ||||||||| |||||||||| |||| ||||| |||||||||||| ||||    
T  36643958 tttgactttactgtatcttttattatagaaatagcttatacatagatacgtatattataagcgcttatactat 36644030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 90
Target Start/End: Complemental strand, 34563242 - 34563159
Alignment:
Q  7 tgaaaagtatttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataa 90  Q
    |||||| | |||||||||| || ||| |||||||||||||||||||||| |||   |||||||||||||  | |||||||||||    
T  34563242 tgaaaattgtttgactttattttatcctttgtcatagaaataacttatatataagcacttatatgataaatgtttatgctataa 34563159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 2107438 - 2107496
Alignment:
Q  41 tagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaat 99  Q
    |||||||||||||||||||   ||||||||||||||||| || ||||||||| ||||||    
T  2107438 tagaaataacttatacataagaacttatatgataagcgcataagctataaacgcttaat 2107496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 40728505 - 40728566
Alignment:
Q  16 tttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagc 77  Q
    |||||||||| || ||||||||| ||||||||||||||| |||  | |||||||||||||||    
T  40728505 tttgactttattttatcttttgttatagaaataacttatgcatgaacacttatatgataagc 40728566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 38561709 - 38561645
Alignment:
Q  16 tttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgct 80  Q
    |||||||||| || ||||||||| ||| |||||||||||| ||| | |||||||| |||||||||    
T  38561709 tttgactttattttatcttttgttatataaataacttatatatagacacttatataataagcgct 38561645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 40280291 - 40280375
Alignment:
Q  15 atttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaat 99  Q
    |||| |||||| || |||||||||  ||||||||||||||| |||   ||||||||||||||||||  |||||||| | ||||||    
T  40280291 attttactttattttatcttttgttgtagaaataacttatatataggcacttatatgataagcgctattgctataagcgcttaat 40280375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 43208239 - 43208303
Alignment:
Q  35 ttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaat 99  Q
    |||| ||||||||| |||||||||| ||||||||||||| | || |||| |||||| ||||||||    
T  43208239 ttgttatagaaatagcttatacataaatacttatatgatgaacgtttatactataagcacttaat 43208303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 2364559 - 2364634
Alignment:
Q  15 atttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataa 90  Q
    ||||||||||| || ||||||||  ||| ||||| | |||||||| ||| ||||||||||| | ||||||||||||    
T  2364559 atttgactttattttatcttttgctataaaaatagcgtatacataaatagttatatgataaacacttatgctataa 2364634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 12224986 - 12225029
Alignment:
Q  16 tttgactttacttcatcttttgtcatagaaataacttatacata 59  Q
    |||||||||| || |||||||||| |||||||||||||||||||    
T  12224986 tttgactttattttatcttttgtcttagaaataacttatacata 12225029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 35453714 - 35453793
Alignment:
Q  20 actttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaat 99  Q
    |||||| || |||||||||  |||||| |  ||||| |||  ||||||||||| ||||||||||||||||| ||||||||    
T  35453714 actttattttatcttttgttgtagaaacagattatatataagtacttatatgacaagcgcttatgctataatcacttaat 35453793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 4762492 - 4762417
Alignment:
Q  18 tgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaat 99  Q
    |||||||| |||||||||||| ||||||||||||||| |      ||| |||| |||||||||||||||||||  |||||||    
T  4762492 tgactttatttcatcttttgtaatagaaataacttatgc------actaatataataagcgcttatgctataagtacttaat 4762417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 29699237 - 29699155
Alignment:
Q  16 tttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaa 98  Q
    |||||||||| || ||||||||| ||||||||||||| ||||||   | |||||||||||    ||||||||||| |||||||    
T  29699237 tttgactttattttatcttttgttatagaaataacttgtacataagcatttatatgataaatatttatgctataagcacttaa 29699155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 12972833 - 12972756
Alignment:
Q  22 tttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaat 99  Q
    |||| |||||||| ||| || |||||| ||||||||||   |||||||||||||  ||||||||||||| | ||||||    
T  12972833 tttatttcatcttctgttattgaaatagcttatacataagcacttatatgataaatgcttatgctataagcgcttaat 12972756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 92
Target Start/End: Original strand, 31875693 - 31875722
Alignment:
Q  63 acttatatgataagcgcttatgctataaac 92  Q
    ||||||||||||||||||||||||||||||    
T  31875693 acttatatgataagcgcttatgctataaac 31875722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 35869829 - 35869736
Alignment:
Q  7 tgaaaagtatttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaata 100  Q
    |||||| | ||||| |||| || || ||||||  |||||||  ||||||||||   |||||||||||||| ||||||||||||| | |||||||    
T  35869829 tgaaaattgtttgaatttattttatattttgttgtagaaatcgcttatacataagaacttatatgataagtgcttatgctataagcgcttaata 35869736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 26820182 - 26820142
Alignment:
Q  16 tttgactttacttcatcttttgtcatagaaataacttatac 56  Q
    |||||||||| || ||||||||| |||||||||||||||||    
T  26820182 tttgactttattttatcttttgttatagaaataacttatac 26820142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 34788514 - 34788594
Alignment:
Q  16 tttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacactt 96  Q
    |||||||||| || |||||| |||||| ||||| ||||||| ||   | ||||||||||||||||||| || || ||||||    
T  34788514 tttgactttattttatctttggtcataaaaatagcttatacgtaagcatttatatgataagcgcttatactttacacactt 34788594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 41336731 - 41336815
Alignment:
Q  15 atttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaat 99  Q
    |||||||| || || ||||||||||||| |||| | |||||||||   | |||| |||||| |||||||||||||| || |||||    
T  41336731 atttgactatattttatcttttgtcataaaaatgatttatacataagcatttatttgataaacgcttatgctataagcaattaat 41336815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 32975961 - 32975878
Alignment:
Q  16 tttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaat 99  Q
    |||||||||| || || |||||| | |||||||||||||||||| | |||||||||| ||||||||||||||||||| ||||||    
T  32975961 tttgactttattttatattttgttacagaaataacttatacataaacacttatatgagaagcgcttatgctataaacgcttaat 32975878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 33068662 - 33068731
Alignment:
Q  30 atcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaat 99  Q
    ||||||||| ||||||||||||||||||||   | |||| ||||||||||||||||||||||||||||||    
T  33068662 atcttttgttatagaaataacttatacataagcatttatttgataagcgcttatgctataaacacttaat 33068731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 2206569 - 2206490
Alignment:
Q  20 actttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaat 99  Q
    |||||| || ||||||||| ||| |||||||||||||| | || |||||| |||||| ||||||||||||| ||||||||    
T  2206569 actttattttatcttttgttataaaaataacttatacagaaatgcttatacgataagagcttatgctataagcacttaat 2206490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 24836285 - 24836340
Alignment:
Q  15 atttgactttacttcatcttttgtcatagaaataacttatacatacatacttatat 70  Q
    ||||||||||| || ||||||||| |||||||||||||||||||| ||||||||||    
T  24836285 atttgactttattttatcttttgttatagaaataacttatacataaatacttatat 24836340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 32206106 - 32206181
Alignment:
Q  15 atttgactttacttcatcttttgtcatagaaataacttatacatacatacttat-atgataagcgcttatgctata 89  Q
    |||| |||||| |||||||||||||||||| ||| |||| |||||  | ||||| |||||||||||||||||||||    
T  32206106 atttaactttatttcatcttttgtcatagagatagcttacacataagtgcttatcatgataagcgcttatgctata 32206181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 4248942 - 4248870
Alignment:
Q  15 atttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgcta 87  Q
    ||||||||||| || ||||||||| || |||||| |||||| |||   |||||||||| ||||||||||||||    
T  4248942 atttgactttattttatcttttgttattgaaatagcttatatataagcacttatatgacaagcgcttatgcta 4248870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 5554866 - 5554917
Alignment:
Q  30 atcttttgtcatagaaataacttatacatacatacttatatgataagcgctt 81  Q
    ||||||||| |||||||||||||||||||| | || ||||||||| ||||||    
T  5554866 atcttttgttatagaaataacttatacataaacacgtatatgatatgcgctt 5554917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 9833184 - 9833267
Alignment:
Q  16 tttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaat 99  Q
    |||||||||| || || | |||| ||||||||| |||||| | |   ||||||||||||| |||||||| ||||||||||||||    
T  9833184 tttgactttattttatttattgtaatagaaatatcttatagagaagcacttatatgataaacgcttatgttataaacacttaat 9833267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 28130028 - 28130095
Alignment:
Q  32 cttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaat 99  Q
    ||||||| ||||||||| |||| ||| |  |||||||||||||  |||||||||||||| ||||||||    
T  28130028 cttttgttatagaaatagcttaaacacaagtacttatatgatagacgcttatgctataagcacttaat 28130095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 31337982 - 31337923
Alignment:
Q  40 atagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaat 99  Q
    |||||||||  |||||||||  ||||||||  |||||||||||||||||||||| |||||    
T  31337982 atagaaatagtttatacataagtacttatacaataagcgcttatgctataaacatttaat 31337923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 2514685 - 2514611
Alignment:
Q  16 tttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataa 90  Q
    |||||||||| || ||||||| | ||||||||| ||||||||||   ||||| |||||||||  |||||||||||    
T  2514685 tttgactttattttatcttttattatagaaatagcttatacataagcacttacatgataagcatttatgctataa 2514611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 34544539 - 34544585
Alignment:
Q  18 tgactttacttcatcttttgtcatagaaataacttatacatacatac 64  Q
    |||||||| || ||||||||| |||||||||||||||||||| ||||    
T  34544539 tgactttagtttatcttttgttatagaaataacttatacataaatac 34544585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 3217276 - 3217361
Alignment:
Q  15 atttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaata 100  Q
    ||||||||||| || ||||| | | | | ||||| ||||||||||   ||||||||||||| ||||||| |||||| |||||||||    
T  3217276 atttgactttattttatcttctcttacaaaaatagcttatacataagcacttatatgataatcgcttatactataagcacttaata 3217361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 31668789 - 31668846
Alignment:
Q  33 ttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataa 90  Q
    |||||| ||||||||| ||||||||||   |||||||||||||  |||||||||||||    
T  31668789 ttttgttatagaaatagcttatacataagcacttatatgataattgcttatgctataa 31668846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 8349750 - 8349834
Alignment:
Q  15 atttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaat 99  Q
    |||| |||||| || ||||||||| | |||||||  ||||||| | | |||||||||||||| | ||||||||||| | ||||||    
T  8349750 atttaactttattttatcttttgttagagaaatagtttatacacaaacacttatatgataagtggttatgctataagcgcttaat 8349834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 22742350 - 22742278
Alignment:
Q  15 atttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgcta 87  Q
    ||||||||||| || ||| ||||| ||| ||||| |||||| |||   ||||||| |||||||||||||||||    
T  22742350 atttgactttattttatcctttgttatacaaatagcttatagataagaacttatacgataagcgcttatgcta 22742278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 28531626 - 28531694
Alignment:
Q  14 tatttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgctta 82  Q
    |||||||||||| || ||||||||| ||| ||||||||||||||     |||| |||||||||||||||    
T  28531626 tatttgactttattttatcttttgttatataaataacttatacaagagcacttttatgataagcgctta 28531694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 99
Target Start/End: Complemental strand, 33027607 - 33027543
Alignment:
Q  35 ttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaat 99  Q
    |||| ||||||||| | ||||||||    |||||||| |||||||||||||||||||| ||||||    
T  33027607 ttgttatagaaatagcatatacataagagcttatatggtaagcgcttatgctataaactcttaat 33027543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 15173506 - 15173426
Alignment:
Q  19 gactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaat 99  Q
    ||||||| |||||||||||| |||||||||||||||||||| | |||| || |||||||| ||||||||| ||| ||||||    
T  15173506 gactttatttcatcttttgttatagaaataacttatacatagacacttgtacgataagcgtttatgctatcaacgcttaat 15173426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 15171233 - 15171150
Alignment:
Q  16 tttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaat 99  Q
    |||||||||| || ||||| ||| ||||||| |||||||||||| | |||||||  ||| | ||||||||||||||||||||||    
T  15171233 tttgactttaatttatcttctgttatagaaaaaacttatacataaacacttataaaatacgagcttatgctataaacacttaat 15171150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 28803593 - 28803676
Alignment:
Q  16 tttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaat 99  Q
    |||||||||| || ||||||||| || ||||||||||||| |||   |||||||||||||||  |||||| |||||||||||||    
T  28803593 tttgactttattttatcttttgttatcgaaataacttatatataagcacttatatgataagcatttatgccataaacacttaat 28803676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 43431534 - 43431605
Alignment:
Q  19 gactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataa 90  Q
    |||||||||| ||||||||| || ||||||||||||||||  | ||||||||||||||||| ||| ||||||    
T  43431534 gactttactttatcttttgttattgaaataacttatacattaacacttatatgataagcgcctatcctataa 43431605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 43808531 - 43808476
Alignment:
Q  44 aaataacttatacatacatacttatatgataagcgcttatgctataaacacttaat 99  Q
    ||||| |||||||||| | |||||||||||| ||||||||||||||||||||||||    
T  43808531 aaatagcttatacataaacacttatatgatacgcgcttatgctataaacacttaat 43808476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 42817464 - 42817546
Alignment:
Q  17 ttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaat 99  Q
    ||||||| | || ||||||||  ||||||||||| |||| ||  | ||||||||||||| |||||||||||||| ||||||||    
T  42817464 ttgacttcattttatcttttggtatagaaataacatataaatcaacacttatatgataaacgcttatgctataagcacttaat 42817546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 13869196 - 13869265
Alignment:
Q  30 atcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaat 99  Q
    |||| |||||||||||||| ||||| |||| |||||| ||||||||| | ||||||||||| | ||||||    
T  13869196 atctcttgtcatagaaatagcttatgcataaatacttctatgataagtgtttatgctataagcgcttaat 13869265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 40672885 - 40672942
Alignment:
Q  18 tgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataa 75  Q
    |||||||| || ||||||| |||||||||||||||||||||| | ||||| |||||||    
T  40672885 tgactttattttatcttttttcatagaaataacttatacataaaaacttaaatgataa 40672942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 25790109 - 25790036
Alignment:
Q  16 tttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaa 91  Q
    |||||||| |||| ||||||| | |||||||||  ||||||||| |  |||||||||||||||||||| |||||||    
T  25790109 tttgacttcactttatctttttttatagaaatatattatacataaa--cttatatgataagcgcttatactataaa 25790036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 32694181 - 32694130
Alignment:
Q  30 atcttttgtcatagaaataacttatacatacatacttatatgataagcgctta 82  Q
    ||||||||  ||||||||| |||||||||| ||||||||||||||||||||||    
T  32694181 atcttttgatatagaaatagcttatacata-atacttatatgataagcgctta 32694130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 5867282 - 5867357
Alignment:
Q  20 actttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacact 95  Q
    |||||| ||| | ||||||  |||||||| |||| ||||| |||||||||||||||| | | ||||||||||||||    
T  5867282 actttatttctttttttgttttagaaatagcttagacataaatacttatatgataagtgttgatgctataaacact 5867357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 35809898 - 35809852
Alignment:
Q  34 tttgtcatagaaataacttatacatacatacttatatgataagcgct 80  Q
    |||||||| |||||||||||||||||   ||||||||||||||||||    
T  35809898 tttgtcatggaaataacttatacataagcacttatatgataagcgct 35809852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 33197327 - 33197400
Alignment:
Q  17 ttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataa 90  Q
    ||||||||| |  ||||||||| ||||||||| |||||| |||   |||||||||||||||| ||||| |||||    
T  33197327 ttgactttattctatcttttgttatagaaatagcttatagataagcacttatatgataagcgtttatgttataa 33197400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 43965242 - 43965291
Alignment:
Q  41 tagaaataacttatacatacatacttatatgataagcgcttatgctataa 90  Q
    |||||||| ||||| |||| | |||||||||||||| |||||||||||||    
T  43965242 tagaaatagcttattcataaacacttatatgataagtgcttatgctataa 43965291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 3423854 - 3423922
Alignment:
Q  15 atttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttat 83  Q
    ||||||||||| || ||||||||  | | |||||||||||||||| | |||| |||||||||| |||||    
T  3423854 atttgactttattttatcttttggtacaaaaataacttatacataaacacttgtatgataagcacttat 3423922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 95
Target Start/End: Complemental strand, 6561303 - 6561271
Alignment:
Q  63 acttatatgataagcgcttatgctataaacact 95  Q
    ||||||||||||||| |||||||||||||||||    
T  6561303 acttatatgataagctcttatgctataaacact 6561271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 10150724 - 10150672
Alignment:
Q  30 atcttttgtcatagaaataacttatacatacatacttatatgataagcgctta 82  Q
    ||||||| | |||||||||||||||||||| | |||||||| ||||| |||||    
T  10150724 atcttttattatagaaataacttatacataaacacttatataataagtgctta 10150672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 19629289 - 19629213
Alignment:
Q  9 aaaagtatttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgc 85  Q
    |||| |||||||||||| || || |||||| ||||||||| ||| |||||| || |||| |||||||  ||||||||    
T  19629289 aaaactatttgactttaatttattttttgttatagaaatagcttctacatatatgcttacatgataaatgcttatgc 19629213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 31461422 - 31461350
Alignment:
Q  15 atttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgcta 87  Q
    ||||||||||| || ||||||||| ||||||||| |||||| |||   ||||||||||||  || ||||||||    
T  31461422 atttgactttattttatcttttgttatagaaatagcttatatataaccacttatatgatatacgtttatgcta 31461350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 39567887 - 39567811
Alignment:
Q  15 atttgactttacttcatcttttgtcatagaaataacttatacatacatacttat-atgataagcgcttatgctataa 90  Q
    |||| |||||| || ||||||||| ||||||||| |||||||| |  | ||||| ||||||||||||||||| ||||    
T  39567887 atttaactttattttatcttttgttatagaaatatcttatacacaagtgcttatcatgataagcgcttatgcaataa 39567811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 20982223 - 20982305
Alignment:
Q  17 ttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaat 99  Q
    ||||||||| || ||| ||||| ||||||||| ||||||||||   ||||||||||||||| |||||||||||| ||||||||    
T  20982223 ttgactttattttatcctttgttatagaaatagcttatacataagcacttatatgataagcacttatgctataagcacttaat 20982305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 6738485 - 6738577
Alignment:
Q  7 tgaaaagtatttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaat 99  Q
    ||||||| ||||||||||| ||  |||||| | || |||||| ||||||||||  ||||||||||||||| | ||||||||||||| ||||||    
T  6738485 tgaaaagaatttgactttattttgtcttttattattgaaatagcttatacataagtacttatatgataagtgtttatgctataaactcttaat 6738577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 26516267 - 26516198
Alignment:
Q  30 atcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaat 99  Q
    |||||||||  |||||||| ||||||||||   |||||||||||||||||||||||||||| | ||||||    
T  26516267 atcttttgttttagaaatagcttatacataagcacttatatgataagcgcttatgctataagcgcttaat 26516198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 40534153 - 40534103
Alignment:
Q  40 atagaaataacttatacatacatacttatatgataagcgcttatgctataa 90  Q
    ||||||||| ||||||||||  | |||||||||||||||||||||||||||    
T  40534153 atagaaatagcttatacataagtccttatatgataagcgcttatgctataa 40534103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 6739855 - 6739774
Alignment:
Q  16 tttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacactta 97  Q
    |||||||||| || ||||||  | |||||||| ||||||||||| |  |||||||||||| |||||||| ||||| ||||||    
T  6739855 tttgactttattttatctttatttatagaaatgacttatacataaacgcttatatgataaacgcttatgatataagcactta 6739774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 4991044 - 4991104
Alignment:
Q  30 atcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataa 90  Q
    ||||||||| ||| ||||| |||||||| | | ||||||||||||| ||||||||||||||    
T  4991044 atcttttgttataaaaatagcttatacacaaacacttatatgataatcgcttatgctataa 4991104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 99
Target Start/End: Complemental strand, 10363153 - 10363060
Alignment:
Q  10 aaagtatttgactttacttcatcttttgtcatagaaataacttatacatacata----cttatatgataagcgcttatgctataaacacttaat 99  Q
    |||| ||||||||||| || ||||||| ||||| |||||  ||||| |||||||    |||||||||||| | |||| ||||||||||||||||    
T  10363153 aaagaatttgactttattttatcttttatcatataaatagattatatatacataaacacttatatgataaccacttaagctataaacacttaat 10363060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 19093957 - 19094007
Alignment:
Q  40 atagaaataacttatacatacatacttatatgataagcgcttatgctataa 90  Q
    ||||||||| |||| | ||| || |||||||||||||||||||||||||||    
T  19093957 atagaaatagcttacatataaatgcttatatgataagcgcttatgctataa 19094007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 29117017 - 29117083
Alignment:
Q  16 tttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgctta 82  Q
    |||||||||| || ||||||||| ||||||||||| ||||||||   |  |||||||||||||||||    
T  29117017 tttgactttattttatcttttgttatagaaataacatatacataatcagctatatgataagcgctta 29117083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 42583133 - 42583087
Alignment:
Q  15 atttgactttacttcatcttttgtcatagaaataacttatacataca 61  Q
    |||| |||||| |||||||||||| ||||||||| ||||||||||||    
T  42583133 atttaactttatttcatcttttgttatagaaataccttatacataca 42583087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 33961652 - 33961603
Alignment:
Q  50 cttatacatacatacttatatgataagcgcttatgctataaacacttaat 99  Q
    |||||||| | | |||||||||||||| |||||| |||||||||||||||    
T  33961652 cttatacaaaaacacttatatgataagtgcttatactataaacacttaat 33961603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 40097504 - 40097549
Alignment:
Q  30 atcttttgtcatagaaataacttatacatacatacttatatgataa 75  Q
    ||||| ||| |||||||||||||||||||||  |||||||||||||    
T  40097504 atcttctgttatagaaataacttatacatacgcacttatatgataa 40097549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 6725173 - 6725137
Alignment:
Q  63 acttatatgataagcgcttatgctataaacacttaat 99  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  6725173 acttatatgataagcacttatgctataagcacttaat 6725137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 18704124 - 18704179
Alignment:
Q  17 ttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgat 73  Q
    ||||||||| || ||||||||| ||||||||||||||||||||   |||||||||||    
T  18704124 ttgactttattt-atcttttgttatagaaataacttatacataagaacttatatgat 18704179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 42582896 - 42582820
Alignment:
Q  15 atttgactttacttcatcttttgtcatagaaataacttatacatacatacttat-atgataagcgcttatgctataa 90  Q
    |||| |||||| |||||||||| |||| |||||| ||||||||||    ||||| ||||||| ||||||||||||||    
T  42582896 atttaactttatttcatcttttatcatggaaatagcttatacataagcgcttattatgataaacgcttatgctataa 42582820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 27560 - 27485
Alignment:
Q  15 atttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataa 90  Q
    ||||||||||| || ||||| ||| ||||||||||||||||||||   ||||| |||||||| |||||||||||||    
T  27560 atttgactttattttatcttctgttatagaaataacttatacataagcacttacatgataagagcttatgctataa 27485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 49060524 - 49060449
Alignment:
Q  15 atttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataa 90  Q
    ||||||||||| || || |||||| ||||||||| |||||||||| |||||||||||||||||  |||| ||||||    
T  49060524 atttgactttattttattttttgttatagaaatagcttatacataaatacttatatgataagccattatactataa 49060449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 44241839 - 44241781
Alignment:
Q  20 actttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcg 78  Q
    |||||| || |||| |||| |||||||||||||||||||||| ||||||||||||||||    
T  44241839 actttattttatctgttgttatagaaataacttatacatacacacttatatgataagcg 44241781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 1431394 - 1431469
Alignment:
Q  15 atttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataa 90  Q
    ||||||||||| || || |||  | || ||||||||||||||||| | ||||||||||||||| ||||||||||||    
T  1431394 atttgactttattttatttttcattatggaaataacttatacataaacacttatatgataagcacttatgctataa 1431469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 29574679 - 29574754
Alignment:
Q  7 tgaaaagtatttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgctta 82  Q
    ||||||||  ||||||||| |||||||||||||||| ||||| ||||||||||   | ||||||||||| ||||||    
T  29574679 tgaaaagttcttgactttatttcatcttttgtcataaaaatagcttatacataagcatttatatgataaacgctta 29574754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 18749897 - 18749971
Alignment:
Q  16 tttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataa 90  Q
    ||||||||||||| ||||||||| ||||||||   || |||| |  ||||||||||||||| |||||||||||||    
T  18749897 tttgactttactttatcttttgttatagaaatgggttttacacaagtacttatatgataagagcttatgctataa 18749971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 25511609 - 25511536
Alignment:
Q  17 ttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataa 90  Q
    ||||||||| |||||||||||| |||||||||| |||||||   | |||||||||||||||   ||||||||||    
T  25511609 ttgactttatttcatcttttgttatagaaataatttatacaacaacacttatatgataagcttgtatgctataa 25511536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 28844455 - 28844386
Alignment:
Q  30 atcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaat 99  Q
    ||||||| | || |||||| ||||||||||   |||||||  ||||||||||||||||||||||||||||    
T  28844455 atctttttttatcgaaatatcttatacataagcacttatacaataagcgcttatgctataaacacttaat 28844386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 42656499 - 42656423
Alignment:
Q  15 atttgactttacttcatcttttgtcatagaaataacttatacatacatactta-tatgataagcgcttatgctataa 90  Q
    ||||||||||| || ||||||||| ||||||||| |||||| |||  | |||| | |||||||||||||||||||||    
T  42656499 atttgactttattttatcttttgttatagaaatagcttatatataagtgcttattttgataagcgcttatgctataa 42656423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 10079441 - 10079492
Alignment:
Q  30 atcttttgtcatagaaataacttatacatacatacttatatgataagcgctt 81  Q
    ||||||||| |||||| || |||||||||||| |||||| ||||||||||||    
T  10079441 atcttttgttatagaagtagcttatacatacaaacttatttgataagcgctt 10079492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 26024078 - 26024153
Alignment:
Q  15 atttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataa 90  Q
    ||||||||||| |||||||| | | ||||||||||||||| ||||  |  ||||||||||| | ||||||||||||    
T  26024078 atttgactttatttcatcttatataatagaaataacttattcataagtgtttatatgataatcccttatgctataa 26024153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 27389342 - 27389295
Alignment:
Q  40 atagaaataacttatacatacatacttatatgataagcgcttatgcta 87  Q
    ||||||||| |||||||||| | ||||||||||||||| |||||||||    
T  27389342 atagaaatagcttatacataaacacttatatgataagcacttatgcta 27389295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 30134031 - 30133951
Alignment:
Q  17 ttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaat 99  Q
    ||||||||| || |||||||||  || ||||| |||||||||| | ||||||  |||||||||||||||||||| || |||||    
T  30134031 ttgactttattttatcttttgttgtaaaaatagcttatacataaacacttat--gataagcgcttatgctataagcatttaat 30133951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 6 - 99
Target Start/End: Complemental strand, 36532344 - 36532254
Alignment:
Q  6 ttgaaaagtatttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaat 99  Q
    |||||||  ||||||||||  || ||||||||| ||||  |||||||||||||| ||   ||||||||||||| ||||| ||||| ||||||||    
T  36532344 ttgaaaataatttgactttgttttatcttttgttatagggataacttatacataaat---tatatgataagcgtttatggtataatcacttaat 36532254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 31341177 - 31341103
Alignment:
Q  16 tttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataa 90  Q
    |||||||||| || ||||||||| ||| ||||| ||||||||||   | ||| ||||||||||||||||| ||||    
T  31341177 tttgactttattttatcttttgttatacaaatagcttatacataagcatttagatgataagcgcttatgcaataa 31341103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 39551649 - 39551695
Alignment:
Q  30 atcttttgtcatagaaataacttatacatacatacttatatgataag 76  Q
    ||||||||| ||||||||| ||||||| || ||||||||||||||||    
T  39551649 atcttttgttatagaaatagcttatacttaaatacttatatgataag 39551695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 40371720 - 40371757
Alignment:
Q  53 atacatacatacttatatgataagcgcttatgctataa 90  Q
    ||||||||| ||||||||||| ||||||||||||||||    
T  40371720 atacatacacacttatatgattagcgcttatgctataa 40371757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 27121672 - 27121740
Alignment:
Q  15 atttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttat 83  Q
    ||||||||||| || ||| ||| | ||||||||| ||||||||||   | |||||||||||||||||||    
T  27121672 atttgactttattttatcatttattatagaaatatcttatacataaggaattatatgataagcgcttat 27121740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 39591553 - 39591593
Alignment:
Q  15 atttgactttacttcatcttttgtcatagaaataacttata 55  Q
    ||||||||||| || ||||||||| ||||||||||||||||    
T  39591553 atttgactttattttatcttttgttatagaaataacttata 39591593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 9279441 - 9279487
Alignment:
Q  44 aaataacttatacatacatacttatatgataagcgcttatgctataa 90  Q
    |||||||||||||||| || |||||||||||||||||||||||||||    
T  9279441 aaataacttatacataaatgcttatatgataagcgcttatgctataa 9279487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 16790189 - 16790249
Alignment:
Q  30 atcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataa 90  Q
    ||||||||| |||||||||||||||| |||   ||||||||||||| ||||||||||||||    
T  16790189 atcttttgttatagaaataacttatatataagcacttatatgataaacgcttatgctataa 16790249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 24605103 - 24605146
Alignment:
Q  16 tttgactttacttcatcttttgtcatagaaataacttatacata 59  Q
    |||||||||| |||||||||||| ||||||||||||||||||||    
T  24605103 tttgactttatttcatcttttgttatagaaataacttatacata 24605146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 36445700 - 36445636
Alignment:
Q  31 tcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacact 95  Q
    |||||||| ||||||||| |||||||||| | ||| ||||||||||| ||||||| |||| ||||    
T  36445700 tcttttgttatagaaatagcttatacataaaaactcatatgataagcacttatgcaataagcact 36445636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 52450126 - 52450198
Alignment:
Q  3 tatttgaaaagtatttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataa 75  Q
    |||||||||| | |||||||||| |||||||||||| ||||||||  ||||| ||||  ||||| ||||||||    
T  52450126 tatttgaaaactgtttgactttatttcatcttttgttatagaaattgcttatgcataagtacttgtatgataa 52450198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 38462264 - 38462194
Alignment:
Q  16 tttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgct 86  Q
    |||||||||| || ||||||||  ||||||||| |||||| ||| | |||||||||||||| | |||||||    
T  38462264 tttgactttattttatcttttggtatagaaatagcttataaataaacacttatatgataagtgtttatgct 38462194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 41028939 - 41029012
Alignment:
Q  17 ttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataa 90  Q
    ||||||||| ||  |||||||| ||||||||| ||||||||||   |||||||||||||||  ||| |||||||    
T  41028939 ttgactttattttttcttttgttatagaaatagcttatacataagcacttatatgataagcatttaagctataa 41029012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 43116529 - 43116594
Alignment:
Q  30 atcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacact 95  Q
    ||||||||| ||||||||| |||| ||||| | |||| |||||||| |  ||||||||||||||||    
T  43116529 atcttttgttatagaaatagcttacacataaacacttgtatgataaacatttatgctataaacact 43116594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 1395655 - 1395611
Alignment:
Q  15 atttgactttacttcatcttttgtcatagaaataacttatacata 59  Q
    ||||||||||| || ||||||||| ||||||||| ||||||||||    
T  1395655 atttgactttattttatcttttgttatagaaatagcttatacata 1395611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 27888693 - 27888765
Alignment:
Q  19 gactttacttcatcttttgtcatagaaataacttat-acatacatacttatatgataagcgcttatgctataa 90  Q
    ||||||| || ||||||||| ||| ||||| | ||| ||||| ||| ||||||||||| ||||||||||||||    
T  27888693 gactttattttatcttttgttatacaaatagcctattacataaataattatatgataaacgcttatgctataa 27888765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 44284145 - 44284213
Alignment:
Q  16 tttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatg 84  Q
    |||||||||  || || |||||| ||||||||| |||||||||   |||||||||||||| ||||||||    
T  44284145 tttgactttgttttattttttgttatagaaatagcttatacattagtacttatatgataatcgcttatg 44284213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 48364965 - 48365009
Alignment:
Q  15 atttgactttacttcatcttttgtcatagaaataacttatacata 59  Q
    ||||||||||| || ||||||||| || |||||||||||||||||    
T  48364965 atttgactttattttatcttttgttatcgaaataacttatacata 48365009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 4200211 - 4200129
Alignment:
Q  17 ttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaat 99  Q
    ||||||||| || ||||||||| ||| |||||||||||| ||| | ||||| |||||||| ||||||||||||  ||||||||    
T  4200211 ttgactttattttatcttttgttataaaaataacttatatataaacacttagatgataagtgcttatgctatacgcacttaat 4200129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 7274025 - 7274099
Alignment:
Q  15 atttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctata 89  Q
    ||||||||||| |||||||||||| ||| ||||||| ||||||||   | ||||||||||||| |||||||||||    
T  7274025 atttgactttatttcatcttttgttataaaaataacatatacataagcatttatatgataagcacttatgctata 7274099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 23895319 - 23895249
Alignment:
Q  16 tttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgct 86  Q
    ||||| |||| || ||||||||| ||||||||| ||||||||||   |||||||||||||| |||||||||    
T  23895319 tttgaatttattttatcttttgttatagaaatagcttatacataataacttatatgataagggcttatgct 23895249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 42556718 - 42556760
Alignment:
Q  16 tttgactttacttcatcttttgtcatagaaataacttatacat 58  Q
    ||||| |||| ||||||||||||||||||||||||||||||||    
T  42556718 tttgattttatttcatcttttgtcatagaaataacttatacat 42556760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 46504318 - 46504388
Alignment:
Q  30 atcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaata 100  Q
    ||||||||| ||| |||||  ||||| | | | |||||||||||||| |||||||||||||||||||||||    
T  46504318 atcttttgttataaaaatagtttatagacaaacacttatatgataagagcttatgctataaacacttaata 46504388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 49517054 - 49516969
Alignment:
Q  15 atttgactttacttcatcttttgtcatagaaataacttatacataca-tacttatatgataagcgcttatgctataaacacttaat 99  Q
    ||||||||||| || ||||||||| |||||||||||||||||| | |  | ||||||||||| |||||||| | ||| ||||||||    
T  49517054 atttgactttattttatcttttgttatagaaataacttatacacaaacaatttatatgataaacgcttatgttttaagcacttaat 49516969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 11218183 - 11218235
Alignment:
Q  30 atcttttgtcatagaaataacttatacatacatacttatatgataagcgctta 82  Q
    |||||||| |||| |||||||||||||||| | ||||||||||||| ||||||    
T  11218183 atcttttgacatataaataacttatacataaacacttatatgataaacgctta 11218235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 49282822 - 49282874
Alignment:
Q  47 taacttatacatacatacttatatgataagcgcttatgctataaacacttaat 99  Q
    ||||||||||||| | ||||||| ||||||| ||||||||||||||| |||||    
T  49282822 taacttatacataaacacttatacgataagcacttatgctataaacaattaat 49282874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 16982027 - 16982090
Alignment:
Q  20 actttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttat 83  Q
    |||||| || ||||||||| || ||||||| ||||||||| | ||||||||||||||| |||||    
T  16982027 actttattttatcttttgttatcgaaataagttatacataaacacttatatgataagctcttat 16982090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 30237857 - 30237916
Alignment:
Q  41 tagaaataacttatacatacat-acttatatgataagcgcttatgctataaacacttaat 99  Q
    ||||||||||||||||||| |  |||||||| ||||| |||||||||||| |||||||||    
T  30237857 tagaaataacttatacataaaacacttatataataagtgcttatgctatagacacttaat 30237916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 36641859 - 36641800
Alignment:
Q  15 atttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgata 74  Q
    ||||||||||| || ||||||||| |||||||||||||||| |||  || ||||||||||    
T  36641859 atttgactttattttatcttttgttatagaaataacttatatataagtaattatatgata 36641800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 26679239 - 26679185
Alignment:
Q  34 tttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctat 88  Q
    ||||| |||||||||||||| ||||| | |||||||| ||||||| |||||||||    
T  26679239 tttgttatagaaataacttacacataaacacttatatcataagcgtttatgctat 26679185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 4202217 - 4202282
Alignment:
Q  17 ttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgctta 82  Q
    ||||||||  || ||||||||| ||||||||||||||||| ||   ||||||||||||| ||||||    
T  4202217 ttgactttggtttatcttttgttatagaaataacttatacttaagcacttatatgataaacgctta 4202282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 47885120 - 47885169
Alignment:
Q  41 tagaaataacttatacatacatacttatatgataagcgcttatgctataa 90  Q
    |||||||||||||| ||||   | ||||||||||||||||||||||||||    
T  47885120 tagaaataacttattcataagcaattatatgataagcgcttatgctataa 47885169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 49557126 - 49557041
Alignment:
Q  14 tatttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaat 99  Q
    ||||| |||||| || ||||||||| ||||||||||||||||||     |||||||||||||| | ||| | ||||| ||||||||    
T  49557126 tatttaactttattttatcttttgttatagaaataacttatacagcagcacttatatgataagtgattacgttataagcacttaat 49557041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 15558148 - 15558112
Alignment:
Q  63 acttatatgataagcgcttatgctataaacacttaat 99  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  15558148 acttatatgataagcgcttattctataaacccttaat 15558112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 17420183 - 17420103
Alignment:
Q  19 gactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaat 99  Q
    ||||||| || ||||||| | ||| |||||  |||||||||  ||||||| || ||||||||||| |||||| ||||||||    
T  17420183 gactttattttatcttttcttataaaaatagtttatacataagtacttatgtgctaagcgcttatactataatcacttaat 17420103  T

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Target: scaffold0590 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 1161 - 1244
Alignment:
Q  16 tttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaat 99  Q
    |||||||||| || ||||||||| ||||||||| ||||||||||   ||||||||||||  || |||||||||||  |||||||    
T  1161 tttgactttattttatcttttgttatagaaatagcttatacataagcacttatatgatagacgtttatgctataagtacttaat 1244  T

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Target: scaffold0275 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 2814 - 2731
Alignment:
Q  16 tttgactttacttcatcttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaat 99  Q
    |||||||||| || ||||||||| ||||||||| ||||||||||   ||||||||||||  || |||||||||||  |||||||    
T  2814 tttgactttattttatcttttgttatagaaatagcttatacataagcacttatatgatagacgtttatgctataagtacttaat 2731  T

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Target: scaffold0455 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 8615 - 8682
Alignment:
Q  32 cttttgtcatagaaataacttatacatacatacttatatgataagcgcttatgctataaacacttaat 99  Q
    ||||||| ||||||||| |||| ||| |  |||||||||||||  |||||||||||||| ||||||||    
T  8615 cttttgttatagaaatagcttaaacacaagtacttatatgatagacgcttatgctataagcacttaat 8682  T

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Target: scaffold0085 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 26175 - 26211
Alignment:
Q  63 acttatatgataagcgcttatgctataaacacttaat 99  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  26175 acttatatgataagtgcttatgctataagcacttaat 26211  T

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