View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10113_low_19 (Length: 362)
Name: NF10113_low_19
Description: NF10113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10113_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 42 - 334
Target Start/End: Original strand, 35690171 - 35690463
Alignment:
| Q |
42 |
ttcatatcttcattactgtccaattgttttttaatacaaaaagcacacatcatgtgattggaaaataaaatatctatgatactttttgtttaacacatga |
141 |
Q |
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| T |
35690171 |
ttcatatctccattactgtccagttgttttttaatacaaaaagcacacatcatgtgattggaaaataaaatatctatgatactttttttttaacacatga |
35690270 |
T |
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| Q |
142 |
tatcgatgatgatgtattaaactttcttttatgagaatcatgactgttgcataaatatatattatcataattttactccaccaaataaccactcctaatt |
241 |
Q |
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| T |
35690271 |
tatcgatgatgatgtattaaactttcttttatgagaatcatgactgttgcataaatatatattatcataattttactccaccaaataaccactcctaatt |
35690370 |
T |
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| Q |
242 |
tagaatattaaggaatcaaattcttggtatagttggtgacccattcccgtgggagttggtaacattttattgtttgtacttgacctttaaact |
334 |
Q |
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| T |
35690371 |
tagaatatcaaggaatcaaattcttggtatagttggtgacccattcccttgggagttggtaacattttattgtttgtacttgacctttaaact |
35690463 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 357
Target Start/End: Original strand, 32896639 - 32896668
Alignment:
| Q |
328 |
ttaaactagttactttctgttccctctctg |
357 |
Q |
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| T |
32896639 |
ttaaactagttactttctgttccctctctg |
32896668 |
T |
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