View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10113_low_2 (Length: 832)
Name: NF10113_low_2
Description: NF10113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10113_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 271 - 485
Target Start/End: Original strand, 8235998 - 8236212
Alignment:
| Q |
271 |
cgggccctttatagtaataataaatcctttggacgctttcacccttcattcaatgctttaccaaacttcctatcctcttctctttcaatttcatcctttg |
370 |
Q |
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| T |
8235998 |
cgggcactttatagtaataataaatcctttggacgctttcacccttcattcaatgctttaccaaacttcctatcctcttctctttcaatttcatcctctg |
8236097 |
T |
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| Q |
371 |
cattcttcttccaccaccattcctctctcaaccatatcaccacaaaaactttctctcttttctcatcttcctcatcctcactcacaggtataacactatt |
470 |
Q |
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| T |
8236098 |
cattcttcttccaccaccattcctctctcaaccatatcaccacaaaaactttctctcttttctcatcttcctcatcctcactcacaggtataacactatt |
8236197 |
T |
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| Q |
471 |
caaatatcaattatc |
485 |
Q |
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| T |
8236198 |
cacatatgaattatc |
8236212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 8235750 - 8235947
Alignment:
| Q |
23 |
tcaaacagttttaaaatgtacatacgctaagtacaatcgtcctgttcctacaaaacataataaggaatcctcactcgaaacttcatttcaggtttatgtt |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8235750 |
tcaaacagttttaaaatgtacatacgctaagtacaatcgtcctgttcctacaaaacataataaggaatcctcactcgaaacttcatttcaggtttatgtt |
8235849 |
T |
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| Q |
123 |
aaaaaatttccctaatttattgtagcatctaccgttatgtatgaaaaccataaacgtatttgaaatgttaacacataaatatactttagtttagggat |
220 |
Q |
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| T |
8235850 |
aaaaaatttccctaatttattgtagcatctaccgttatgtatgaaaaccataaacgtatttgaaatgttaacacataaatatactttagtttagggat |
8235947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 554 - 722
Target Start/End: Original strand, 8236281 - 8236449
Alignment:
| Q |
554 |
ggtttcaaaaacggaaatggagtgcgttgttgaaacagcgttgaaaaccagtttaaggaaagatataactcctcaaacatttgttgatgaaatttcagta |
653 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
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| T |
8236281 |
ggtttcaaaaacggtaatggagtgcgttgttgaaacagcgttgaaaaccagtttaaggaaagacataactcctcaaacatttgttgatgaaatttcagca |
8236380 |
T |
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| Q |
654 |
ctcaatgcacaaaatggaacaacttctgatgattttttcgttgacgacctccttgacttttctcacgtt |
722 |
Q |
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| T |
8236381 |
ctcaatgctcaaaatggaacaacttctgatgattttttcgttgacgacctccttgacttttctcacgtt |
8236449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 782 - 818
Target Start/End: Original strand, 8236506 - 8236542
Alignment:
| Q |
782 |
ctctctttgtctctccctcaaacaaaaccatgaaact |
818 |
Q |
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| T |
8236506 |
ctctctttgtctctccctcaaacaaaaccatgaaact |
8236542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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