View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10113_low_20 (Length: 359)
Name: NF10113_low_20
Description: NF10113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10113_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 14 - 314
Target Start/End: Original strand, 7238216 - 7238516
Alignment:
| Q |
14 |
gaaaagaccgtcatggtaagaagtcccttcactcccttgcgctccaatagttacagcccgcgtgacattcatcattgattcataaactcgaacaaatatt |
113 |
Q |
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| T |
7238216 |
gaaaagaccgtcatggtaagaagtcccttcactcccttgtgctccaatagttacagcccgcgtgacattcatcattgattcataaactcgaacaaatatt |
7238315 |
T |
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| Q |
114 |
gaatctaatgagaataaaagaaaagcgtcaaagaaagctaaaagcatgttgaattctatggtattcagaccacaattttacatagttatctacttatagt |
213 |
Q |
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| T |
7238316 |
gaatctaatgagaataaaagaaaagcgtcaaagaaagctaaaagcatgttgaattctatggtattcagaccacaattttacatagttatctacttatagt |
7238415 |
T |
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| Q |
214 |
aagttctaaattcaaatttcaatcattgaggaaaaaattgacaagcttttgataaggatatatcacaaaaaataagcctaagaccctttggatattacaa |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7238416 |
aagttctaaattcaaatttcaatcattgaggaaaaaattgacaagcttttgataaggatatatcacaaaaaataagcctaagaccctttggatatgacaa |
7238515 |
T |
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| Q |
314 |
g |
314 |
Q |
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| T |
7238516 |
g |
7238516 |
T |
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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 149
Target Start/End: Original strand, 5839322 - 5839417
Alignment:
| Q |
54 |
gctccaatagttacagcccgcgtgacattcatcattgattcataaactcgaacaaatattgaatctaatgagaataaaagaaaagcgtcaaagaaa |
149 |
Q |
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| T |
5839322 |
gctccaataattacagccctcatgagatccattcttgattcataaactcgaacaaatattgaatctgatgaggataaaaagaaagagtcaaagaaa |
5839417 |
T |
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