View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10113_low_21 (Length: 320)
Name: NF10113_low_21
Description: NF10113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10113_low_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 16 - 310
Target Start/End: Complemental strand, 37613384 - 37613090
Alignment:
| Q |
16 |
caataaggttaaaaataagactcagtgcagatgattgctttaaatcatcacgctcaaaggatgcttcaagtctcctacatgaagcatatgttttcctagg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37613384 |
caataaggttaaaaataagactcagtgcagatgattgctttaaatcatcacgctcaaaggatgcttcaagtctcctacatgaagcatatgttttcctagg |
37613285 |
T |
|
| Q |
116 |
gcaacttttctgttgccaagttcatcaaccacactcaaatctttacaaacatctactttgaaactgaccagtgcttctgattttcctgtaaagtgtactt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37613284 |
gcaacttttctgttgccaagttcatcaaccacactcaaatctttacaaacatctactttgaaactgaccagtgcttctgattttcctgtaaagtgtactt |
37613185 |
T |
|
| Q |
216 |
tttcgaaagccaacaagtgtttctgaggtgcattgtgcactgcaggaggagtagagaacaaaaacactgtttggctactgctcattttccctttg |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37613184 |
tttcgaaagccaacaagtgtttctgaggtgcattgtgcactgcaggaggagtagagaacaaaaacactgtttggctactgctcattttccctttg |
37613090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 57 - 306
Target Start/End: Original strand, 1367289 - 1367538
Alignment:
| Q |
57 |
aaatcatcacgctcaaaggatgcttcaagtctcctacatgaagcatatgttttcctagggcaacttttctgttgccaagttcatcaaccacactcaaatc |
156 |
Q |
| |
|
||||| |||| ||||| | ||||||||||| ||| ||||||||||| || | || | | |||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
1367289 |
aaatcctcacactcaatgaatgcttcaagtttccaacatgaagcatgtggtcccccaatggaacttttctgttaccaagttcatcaacaacactcaaatc |
1367388 |
T |
|
| Q |
157 |
tttacaaacatctactttgaaactgaccagtgcttctgattttcctgtaaagtgtactttttcgaaagccaacaagtgtttctgaggtgcattgtgcact |
256 |
Q |
| |
|
|| ||||||||||| ||||| || |||| | ||||||||||||||| || || || ||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1367389 |
attgcaaacatctaccttgaacctaaccattccttctgattttcctgccaattgcaccttttcaaaacccaacaagtgtttctgaggtgcattgtgcaca |
1367488 |
T |
|
| Q |
257 |
gcaggaggagtagagaacaaaaacactgtttggctactgctcattttccc |
306 |
Q |
| |
|
|||||| ||| |||| || ||||||| |||||||| ||||||||||| |
|
|
| T |
1367489 |
ttaggaggggtaaagaataacaacactgaatggctactactcattttccc |
1367538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University