View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10113_low_24 (Length: 304)

Name: NF10113_low_24
Description: NF10113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10113_low_24
NF10113_low_24
[»] chr5 (1 HSPs)
chr5 (15-290)||(6466330-6466605)


Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 15 - 290
Target Start/End: Original strand, 6466330 - 6466605
Alignment:
15 tggacatcagttagcgacccttattttatattaaaaacatttcataatctttcaatactttttctccaaacctcaaaatatttcagagttatgtttgtaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
6466330 tggacatcagttagcgacccttattttatattaaaaacatttcataatctttcaatactttttctccaaacctcaaaatatttcagagttatgtttgtaa 6466429  T
115 caattattcttactatttttattttcaggaaacaatgaagatggacgtatgatgttaaatcaaaccttcacgattggtaannnnnnnncaatacaatata 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||    
6466430 caattattcttactatttttattttcaggaaacaatgaagatggacgtatgatgttaaatcaaaccttcacgattggtaattttttttcaatacaatata 6466529  T
215 gattgttatgaactaatgcttatgattattgtttgcgaagctggaatctttgcatttgttttgctcttgttctctg 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
6466530 gattgttatgaactaatgcttatgattattgtttgcgaagctggaatctttgcatttgttttgctcttgttctctg 6466605  T

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