View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10113_low_26 (Length: 296)
Name: NF10113_low_26
Description: NF10113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10113_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 35690706 - 35690969
Alignment:
| Q |
19 |
acaaaatcaatgaaggtgccagtgtatttccttaacatcacaaccttatcagagtatcgaaaagatgcacatacctctgtttataccatacgtcaaggga |
118 |
Q |
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| T |
35690706 |
acaaaatcaatgaaggtgccagtgtatttccttaacatcacaaccttatcagagtatcgaaaagatgcgcatacctctgtttataccatacgtcaaggga |
35690805 |
T |
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| Q |
119 |
agatgctaacacctgaacaacaagctgatccaactacttatgcagattgtattcattggtgtttaccaggcttaccagacatttggaacgagttccttta |
218 |
Q |
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| T |
35690806 |
agatgctaacacctgaacaacaagctgatccaactacttatgcagattgtattcattggtgtttaccaggcttaccagacatttggaacgagttccttta |
35690905 |
T |
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| Q |
219 |
tacgcaaatcatctctcaatcttgacaaataacgtacatatatatcttcatacacgataccttt |
282 |
Q |
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| T |
35690906 |
tacgcaaatcatctctcaatcttgacaaataacgtacatatatatcttcatacacgataccttt |
35690969 |
T |
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Back To:
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Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 64 - 221
Target Start/End: Original strand, 31823254 - 31823411
Alignment:
| Q |
64 |
ttatcagagtatcgaaaagatgcacatacctctgtttataccatacgtcaagggaagatgctaacacctgaacaacaagctgatccaactacttatgcag |
163 |
Q |
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|||||||| ||| |||||||||||||||| |||||||| || ||||||||||| || || |||| || || ||||||||| | || |||||||||||| |
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| T |
31823254 |
ttatcagaatatagaaaagatgcacatacttctgtttacacaatacgtcaaggcaaagtgttaactccagagcaacaagctaaccctgctacttatgcag |
31823353 |
T |
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| Q |
164 |
attgtattcattggtgtttaccaggcttaccagacatttggaacgagttcctttatac |
221 |
Q |
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| T |
31823354 |
attgtatccattggtgtttaccagggttacctgatacatggaatgagttgctttatac |
31823411 |
T |
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