View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10113_low_26 (Length: 296)

Name: NF10113_low_26
Description: NF10113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10113_low_26
NF10113_low_26
[»] chr5 (1 HSPs)
chr5 (19-282)||(35690706-35690969)
[»] chr3 (1 HSPs)
chr3 (64-221)||(31823254-31823411)


Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 35690706 - 35690969
Alignment:
19 acaaaatcaatgaaggtgccagtgtatttccttaacatcacaaccttatcagagtatcgaaaagatgcacatacctctgtttataccatacgtcaaggga 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
35690706 acaaaatcaatgaaggtgccagtgtatttccttaacatcacaaccttatcagagtatcgaaaagatgcgcatacctctgtttataccatacgtcaaggga 35690805  T
119 agatgctaacacctgaacaacaagctgatccaactacttatgcagattgtattcattggtgtttaccaggcttaccagacatttggaacgagttccttta 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35690806 agatgctaacacctgaacaacaagctgatccaactacttatgcagattgtattcattggtgtttaccaggcttaccagacatttggaacgagttccttta 35690905  T
219 tacgcaaatcatctctcaatcttgacaaataacgtacatatatatcttcatacacgataccttt 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35690906 tacgcaaatcatctctcaatcttgacaaataacgtacatatatatcttcatacacgataccttt 35690969  T

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Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 64 - 221
Target Start/End: Original strand, 31823254 - 31823411
Alignment:
64 ttatcagagtatcgaaaagatgcacatacctctgtttataccatacgtcaagggaagatgctaacacctgaacaacaagctgatccaactacttatgcag 163  Q
    |||||||| ||| |||||||||||||||| |||||||| || ||||||||||| ||  || |||| || || ||||||||| | ||  ||||||||||||    
31823254 ttatcagaatatagaaaagatgcacatacttctgtttacacaatacgtcaaggcaaagtgttaactccagagcaacaagctaaccctgctacttatgcag 31823353  T
164 attgtattcattggtgtttaccaggcttaccagacatttggaacgagttcctttatac 221  Q
    ||||||| ||||||||||||||||| ||||| || |  ||||| ||||| ||||||||    
31823354 attgtatccattggtgtttaccagggttacctgatacatggaatgagttgctttatac 31823411  T

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