View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10113_low_29 (Length: 273)

Name: NF10113_low_29
Description: NF10113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10113_low_29
NF10113_low_29
[»] chr2 (1 HSPs)
chr2 (30-256)||(32785243-32785469)
[»] chr8 (5 HSPs)
chr8 (72-227)||(18314842-18314997)
chr8 (73-227)||(18318848-18319002)
chr8 (140-185)||(32151732-32151777)
chr8 (86-185)||(17635903-17636002)
chr8 (78-185)||(17643197-17643304)
[»] chr6 (1 HSPs)
chr6 (67-193)||(6588521-6588647)
[»] chr4 (2 HSPs)
chr4 (145-227)||(532589-532671)
chr4 (66-178)||(7308244-7308356)
[»] chr3 (1 HSPs)
chr3 (146-183)||(513927-513964)
[»] chr1 (1 HSPs)
chr1 (158-191)||(9587040-9587073)


Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 30 - 256
Target Start/End: Complemental strand, 32785469 - 32785243
Alignment:
Q  30 aaggagtgtaaacaaggttgcacgtttgtcggacttgcaatattggtgtctcacggagagcagaagctataccggcattggatattttatgacagtcaaa 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32785469 aaggagtgtaaacaaggttgcacgtttgtcggacttgcaatattggtgtctcacggagagcagaagctataccggcattggatattttatgacagtcaaa 32785370  T
Q  130 tatgatggcttctttgagaagcttcaagtttttgaacaagtggaaaagcgattgattgttgatgaaatattgaccagtaagattaaccttgcggagttgg 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||    
T  32785369 tatgatggcttctttgagaagcttcaagtttttgaacaagtggaaaagcgattgattgttgatgtaataatgaccagtaagattaaccttgtggagttgg 32785270  T
Q  230 aacaatgacggtgaaagagattctatt 256  Q
    |||||||||||||||||||||||||||    
T  32785269 aacaatgacggtgaaagagattctatt 32785243  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 72 - 227
Target Start/End: Complemental strand, 18314997 - 18314842
Alignment:
Q  72 ttggtgtctcacggagagcagaagctataccggcattggatattttatgacagtcaaatatgatggcttctttgagaagcttcaagtttttgaacaagtg 171  Q
    ||||| |||||||||||||| |||| ||||| || |||| ||||| |||||||| ||||||||| |  |||| |||||||||  |||| |||||||||||    
T  18314997 ttggtctctcacggagagcaaaagcaatacccgcgttggttatttgatgacagtaaaatatgattgtctcttcgagaagcttacagttcttgaacaagtg 18314898  T
Q  172 gaaaagcgattgattgttgatgaaatattgaccagtaagattaaccttgcggagtt 227  Q
    |||||||||||||| ||||||| | || ||| |||  | ||||||||| |||||||    
T  18314897 gaaaagcgattgatcgttgatgtagtaatgatcagcgaaattaacctttcggagtt 18314842  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 73 - 227
Target Start/End: Complemental strand, 18319002 - 18318848
Alignment:
Q  73 tggtgtctcacggagagcagaagctataccggcattggatattttatgacagtcaaatatgatggcttctttgagaagcttcaagtttttgaacaagtgg 172  Q
    |||| ||||| |||| | |||||| |||||  |||||| ||||| || |||||||| ||||||||| |||| |||||||||| |||| ||||||||||||    
T  18319002 tggtctctcatggagggaagaagcaataccatcattggttatttgatcacagtcaagtatgatggcctcttcgagaagcttccagttcttgaacaagtgg 18318903  T
Q  173 aaaagcgattgattgttgatgaaatattgaccagtaagattaaccttgcggagtt 227  Q
    | ||||||||||| | ||||  | |  |||||||| |||| |||||| |||||||    
T  18318902 ataagcgattgatcggtgatatagtgatgaccagtgagatcaacctttcggagtt 18318848  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 32151732 - 32151777
Alignment:
Q  140 tctttgagaagcttcaagtttttgaacaagtggaaaagcgattgat 185  Q
    |||| |||||||||| |||| |||||||||||||||||||||||||    
T  32151732 tcttcgagaagcttccagttgttgaacaagtggaaaagcgattgat 32151777  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 185
Target Start/End: Complemental strand, 17636002 - 17635903
Alignment:
Q  86 agagcagaagctataccggcattggatattttatgacagtcaaatatgatggcttctttgagaagcttcaagtttttgaacaagtggaaaagcgattgat 185  Q
    |||||||| || ||||||||||||| |||||  ||||| |  ||||||||||||||||  |||| |||| | || |||||||||| || ||| |||||||    
T  17636002 agagcagaggcaataccggcattggttatttgttgacaattcaatatgatggcttcttcaagaaacttccaattcttgaacaagttgagaagagattgat 17635903  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 185
Target Start/End: Complemental strand, 17643304 - 17643197
Alignment:
Q  78 tctcacggagagcagaagctataccggcattggatattttatgacagtcaaatatgatggcttctttgagaagcttcaagtttttgaacaagtggaaaag 177  Q
    ||||||| ||||||||||| | ||| || |||| ||||| || ||||   ||||||||||| ||||  ||| |||| ||||| |||||||||| || |||    
T  17643304 tctcacgtagagcagaagcaacaccagcgttggttatttcatcacagcgcaatatgatggcctcttctagatgctttaagttcttgaacaagttgagaag 17643205  T
Q  178 cgattgat 185  Q
    ||||||||    
T  17643204 cgattgat 17643197  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 67 - 193
Target Start/End: Complemental strand, 6588647 - 6588521
Alignment:
Q  67 caatattggtgtctcacggagagcagaagctataccggcattggatattttatgacagtcaaatatgatggcttctttgagaagcttcaagtttttgaac 166  Q
    |||| ||||| ||||||||||||||||||| || || ||||||| || || | ||||  |||||||| || |||| | |||||||||  | || ||||||    
T  6588647 caattttggtctctcacggagagcagaagcaatgcctgcattggttaattcacgacaaccaaatatgttgacttcctggagaagcttacaattgttgaac 6588548  T
Q  167 aagtggaaaagcgattgattgttgatg 193  Q
    |||||||||||||||||||||||||||    
T  6588547 aagtggaaaagcgattgattgttgatg 6588521  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 532589 - 532671
Alignment:
Q  145 gagaagcttcaagtttttgaacaagtggaaaagcgattgattgttgatgaaatattgaccagtaagattaaccttgcggagtt 227  Q
    |||||||||  | |||||||||||||||||||||||||| | ||||||| | |  |||  || ||||||||||||||||||||    
T  532589 gagaagcttacaatttttgaacaagtggaaaagcgattggtcgttgatgtagtcatgagtagaaagattaaccttgcggagtt 532671  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 178
Target Start/End: Original strand, 7308244 - 7308356
Alignment:
Q  66 gcaatattggtgtctcacggagagcagaagctataccggcattggatattttatgacagtcaaatatgatggcttctttgagaagcttcaagtttttgaa 165  Q
    ||||| ||||| ||||| | ||||||| ||| || || || |||| || || ||||||||| ||||||||||| ||||  ||||||||  | || || ||    
T  7308244 gcaatgttggtctctcatgtagagcagtagcaatgcctgcgttggttagttgatgacagtctaatatgatggcctcttccagaagcttacaattcttaaa 7308343  T
Q  166 caagtggaaaagc 178  Q
    |||||||||||||    
T  7308344 caagtggaaaagc 7308356  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 513964 - 513927
Alignment:
Q  146 agaagcttcaagtttttgaacaagtggaaaagcgattg 183  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  513964 agaagcttacagtttttgaacaagtggaaaagcgattg 513927  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 191
Target Start/End: Original strand, 9587040 - 9587073
Alignment:
Q  158 tttttgaacaagtggaaaagcgattgattgttga 191  Q
    |||||||||||||||||||||||||| |||||||    
T  9587040 tttttgaacaagtggaaaagcgattggttgttga 9587073  T

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