View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10113_low_3 (Length: 620)

Name: NF10113_low_3
Description: NF10113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10113_low_3
NF10113_low_3
[»] chr3 (1 HSPs)
chr3 (19-603)||(3435411-3435978)
[»] chr4 (1 HSPs)
chr4 (22-324)||(17964068-17964370)


Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 19 - 603
Target Start/End: Complemental strand, 3435978 - 3435411
Alignment:
19 cgtcatctcattcaccatattttctacatcattattcacaacaaaaacaacatgtacttccgctttttcactttcatcacaaatcgaagcatcctcaaac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
3435978 cgtcatctcattcaccatattttctacatcattattcacaacaaaaacaacatgtacttccgctttttcactttcatcacaaatcgaagcatcctcaaac 3435879  T
119 aaacaagcatcctcgcctaatgagaatccccattcctccattattttaatattcaccaaatcatcatcaaccaacaaatcagcttcgtcattaataacct 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
3435878 aaacaagcatcctcgcctaatgagaatccccattcctccattattttaatattcaccaaatcatcatcaaccaacaaatcagcttcgtcattaataatct 3435779  T
219 ctagggatgaagttgccaataaaatacgaacataatcaaaccattctctagcaaccgtgcagttatctaccctcaacaatcgaccaaaatcaaaagcaca 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
3435778 ctagggatgaagttgccaataaaatacgaacataatcaaaccattctctagcaaccgtgcaattatctaccctcaacaatcgaccaaaatcaaaagcaca 3435679  T
319 taatctnnnnnnnnttccattccatgcttgcaaagaaactccataaattcgaatccgtgcacctccttcaaatttttaaaatatatattccaattaaaag 418  Q
    ||||||        | |||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||  |||| | | || ||               
3435678 taatctaaaaaatttcccattccatgcttgcaaagaaactccgtaaattcgaatccgtgaacctctttcaaat--ttaacaca-atctt----------- 3435593  T
419 atactattccacgcaatagtatctcttatactctctttaatccaatttttattatcccaaaaataactaatgttgagatttcatttaaaatatatattac 518  Q
        ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
3435592 ----tattccatgcaatagtatctcttatactctctttaatccaatttttattatcccaaaaataactaatgttgagattccatttaaaatatatattac 3435497  T
519 gaaatcgtt-ttgtaaaaagattcgttttggaaatgaagttggctcctttannnnnnnaatgttattaaaaaactaagtaaacttt 603  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||    
3435496 gaaatcgttgttgtaaaaagattcgttttggaaatgaagttggctcctttatttttttaatgttattaaaaaactaagtaaacttt 3435411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 22 - 324
Target Start/End: Original strand, 17964068 - 17964370
Alignment:
22 catctcattcaccatattttctacatcattattcacaacaaaaacaacatgtacttccgctttttcactttcatcacaaatcgaagcatcctcaaacaaa 121  Q
    |||||||||||||| ||| ||||| |||||||||||||| ||  || ||||  | || |||| |||| | ||| |||||  || | |||||||||| |||    
17964068 catctcattcaccaaattatctacgtcattattcacaactaagtcaccatgatcctctgcttcttcattatcaccacaacccggatcatcctcaaataaa 17964167  T
122 caagcatcctcgcctaatgagaatccccattcctccattattttaatattcaccaaatcatcatcaaccaacaaatcagcttcgtcattaataacctcta 221  Q
    |||||||||||||| || |  || ||| | ||||| |  ||||||||||||| |||| ||||||||||||||||||| || ||| | || |||||||| |    
17964168 caagcatcctcgccgaacggaaaacccaaatcctctacaattttaatattcatcaaagcatcatcaaccaacaaatctgcgtcggcttttataacctcca 17964267  T
222 gggatgaagttgccaataaaatacgaacataatcaaaccattctctagcaaccgtgcagttatctaccctcaacaatcgaccaaaatcaaaagcacataa 321  Q
     ||| |||| || ||||||||||||| | |||||| ||| |||||||  |||||||||  |||| ||||  |||| ||||| ||||||||||||||||||    
17964268 aggaagaagctggcaataaaatacgagcgtaatcatacctttctctataaaccgtgcaactatccacccgtaacattcgactaaaatcaaaagcacataa 17964367  T
322 tct 324  Q
    |||    
17964368 tct 17964370  T

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