View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10113_low_3 (Length: 620)
Name: NF10113_low_3
Description: NF10113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10113_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 19 - 603
Target Start/End: Complemental strand, 3435978 - 3435411
Alignment:
| Q |
19 |
cgtcatctcattcaccatattttctacatcattattcacaacaaaaacaacatgtacttccgctttttcactttcatcacaaatcgaagcatcctcaaac |
118 |
Q |
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| T |
3435978 |
cgtcatctcattcaccatattttctacatcattattcacaacaaaaacaacatgtacttccgctttttcactttcatcacaaatcgaagcatcctcaaac |
3435879 |
T |
|
| Q |
119 |
aaacaagcatcctcgcctaatgagaatccccattcctccattattttaatattcaccaaatcatcatcaaccaacaaatcagcttcgtcattaataacct |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3435878 |
aaacaagcatcctcgcctaatgagaatccccattcctccattattttaatattcaccaaatcatcatcaaccaacaaatcagcttcgtcattaataatct |
3435779 |
T |
|
| Q |
219 |
ctagggatgaagttgccaataaaatacgaacataatcaaaccattctctagcaaccgtgcagttatctaccctcaacaatcgaccaaaatcaaaagcaca |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3435778 |
ctagggatgaagttgccaataaaatacgaacataatcaaaccattctctagcaaccgtgcaattatctaccctcaacaatcgaccaaaatcaaaagcaca |
3435679 |
T |
|
| Q |
319 |
taatctnnnnnnnnttccattccatgcttgcaaagaaactccataaattcgaatccgtgcacctccttcaaatttttaaaatatatattccaattaaaag |
418 |
Q |
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| T |
3435678 |
taatctaaaaaatttcccattccatgcttgcaaagaaactccgtaaattcgaatccgtgaacctctttcaaat--ttaacaca-atctt----------- |
3435593 |
T |
|
| Q |
419 |
atactattccacgcaatagtatctcttatactctctttaatccaatttttattatcccaaaaataactaatgttgagatttcatttaaaatatatattac |
518 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3435592 |
----tattccatgcaatagtatctcttatactctctttaatccaatttttattatcccaaaaataactaatgttgagattccatttaaaatatatattac |
3435497 |
T |
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| Q |
519 |
gaaatcgtt-ttgtaaaaagattcgttttggaaatgaagttggctcctttannnnnnnaatgttattaaaaaactaagtaaacttt |
603 |
Q |
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| T |
3435496 |
gaaatcgttgttgtaaaaagattcgttttggaaatgaagttggctcctttatttttttaatgttattaaaaaactaagtaaacttt |
3435411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 22 - 324
Target Start/End: Original strand, 17964068 - 17964370
Alignment:
| Q |
22 |
catctcattcaccatattttctacatcattattcacaacaaaaacaacatgtacttccgctttttcactttcatcacaaatcgaagcatcctcaaacaaa |
121 |
Q |
| |
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|||||||||||||| ||| ||||| |||||||||||||| || || |||| | || |||| |||| | ||| ||||| || | |||||||||| ||| |
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| T |
17964068 |
catctcattcaccaaattatctacgtcattattcacaactaagtcaccatgatcctctgcttcttcattatcaccacaacccggatcatcctcaaataaa |
17964167 |
T |
|
| Q |
122 |
caagcatcctcgcctaatgagaatccccattcctccattattttaatattcaccaaatcatcatcaaccaacaaatcagcttcgtcattaataacctcta |
221 |
Q |
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|||||||||||||| || | || ||| | ||||| | ||||||||||||| |||| ||||||||||||||||||| || ||| | || |||||||| | |
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| T |
17964168 |
caagcatcctcgccgaacggaaaacccaaatcctctacaattttaatattcatcaaagcatcatcaaccaacaaatctgcgtcggcttttataacctcca |
17964267 |
T |
|
| Q |
222 |
gggatgaagttgccaataaaatacgaacataatcaaaccattctctagcaaccgtgcagttatctaccctcaacaatcgaccaaaatcaaaagcacataa |
321 |
Q |
| |
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||| |||| || ||||||||||||| | |||||| ||| ||||||| ||||||||| |||| |||| |||| ||||| |||||||||||||||||| |
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| T |
17964268 |
aggaagaagctggcaataaaatacgagcgtaatcatacctttctctataaaccgtgcaactatccacccgtaacattcgactaaaatcaaaagcacataa |
17964367 |
T |
|
| Q |
322 |
tct |
324 |
Q |
| |
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||| |
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|
| T |
17964368 |
tct |
17964370 |
T |
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Back To:
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