View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10113_low_30 (Length: 272)
Name: NF10113_low_30
Description: NF10113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10113_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 43 - 266
Target Start/End: Complemental strand, 46748521 - 46748308
Alignment:
| Q |
43 |
ttattgttatgatcatttgttccatcattaattattacacacataagataaaccatacttcaacatcaatcaacattttatacacatttgccatgaggct |
142 |
Q |
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| T |
46748521 |
ttattgttatgatcatttgttccatcattaattattacacacataagataaaccatacttcaacag----------tttatatacatttgccatgaggtt |
46748432 |
T |
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| Q |
143 |
ttccatataatgcctcggttatgcctctaatagttttgggagtggtcctacagcagccaccaaaaagggtagccccagcataacgccactttcctatgta |
242 |
Q |
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| T |
46748431 |
ttccatataatgcctcggttatgcctctaatagttttgggagtggtcctacagcagccaccaaaaagggtagccccagcataacgccactttcctatgta |
46748332 |
T |
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| Q |
243 |
agggacaaaatcttcctttgcttc |
266 |
Q |
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| T |
46748331 |
agggacaaaatcttcctctgcttc |
46748308 |
T |
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