View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10113_low_32 (Length: 264)

Name: NF10113_low_32
Description: NF10113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10113_low_32
NF10113_low_32
[»] chr7 (11 HSPs)
chr7 (1-259)||(39564298-39564556)
chr7 (3-249)||(39547529-39547775)
chr7 (10-249)||(39338553-39338792)
chr7 (2-249)||(39365898-39366145)
chr7 (4-259)||(39353390-39353645)
chr7 (10-259)||(39538061-39538310)
chr7 (19-249)||(39589357-39589587)
chr7 (18-249)||(39575119-39575350)
chr7 (38-259)||(39622115-39622336)
chr7 (102-249)||(1084865-1085013)
chr7 (99-161)||(1085062-1085123)
[»] chr2 (4 HSPs)
chr2 (35-243)||(44223212-44223420)
chr2 (35-243)||(44234034-44234242)
chr2 (35-240)||(44211053-44211258)
chr2 (179-243)||(43457605-43457669)
[»] chr4 (2 HSPs)
chr4 (35-246)||(2877111-2877322)
chr4 (35-249)||(2886878-2887092)
[»] chr3 (1 HSPs)
chr3 (35-259)||(49773066-49773290)
[»] chr1 (1 HSPs)
chr1 (35-207)||(2160941-2161113)
[»] chr8 (1 HSPs)
chr8 (188-240)||(4501297-4501349)


Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 39564556 - 39564298
Alignment:
Q  1 aagaaacctaggtgttgttgaggataagttggttcttttgaagggtgtaagtggagctttcagacctggtgttctcactgctctgatgggtgtgaccggt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39564556 aagaaacctaggtgttgttgaggataagttggttcttttgaagggtgtaagtggagctttcagacctggtgttctcactgctctaatgggtgtgaccggt 39564457  T
Q  101 gctggcaaaacaactctgatggatgtgctttctggtaggaaaaccggaggatatattggtgggaacatcacaatttccggctttccaaagaagcaagaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39564456 gctggcaaaacaactctgatggatgtgctttctggtaggaaaaccggaggatatattggtgggaacatcacaatttccggctttccaaagaagcaagaaa 39564357  T
Q  201 cctttgcaagaatttctgggtactgtgagcaaaatgatatccactctccctatgctact 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  39564356 cctttgcaagaatttctgggtactgtgagcaaaatgatatccactctccttatgttact 39564298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 3 - 249
Target Start/End: Complemental strand, 39547775 - 39547529
Alignment:
Q  3 gaaacctaggtgttgttgaggataagttggttcttttgaagggtgtaagtggagctttcagacctggtgttctcactgctctgatgggtgtgaccggtgc 102  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39547775 gaaaccgaggtgttgttgaggataagttggttcttttgaagggtgtaagtggagctttcagacctggtgttctcactgctctgatgggtgtgactggtgc 39547676  T
Q  103 tggcaaaacaactctgatggatgtgctttctggtaggaaaaccggaggatatattggtgggaacatcacaatttccggctttccaaagaagcaagaaacc 202  Q
     ||||||||||||||||||||||| ||||||||||| ||||| || |||||||||||||||||||||||||| || |||| ||||||||||||||| |||    
T  39547675 aggcaaaacaactctgatggatgtactttctggtagaaaaactggtggatatattggtgggaacatcacaatatctggctatccaaagaagcaagatacc 39547576  T
Q  203 tttgcaagaatttctgggtactgtgagcaaaatgatatccactctcc 249  Q
    |||||||||||||| || ||||||||||||| ||||||||| |||||    
T  39547575 tttgcaagaatttcaggatactgtgagcaaactgatatccattctcc 39547529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 10 - 249
Target Start/End: Original strand, 39338553 - 39338792
Alignment:
Q  10 aggtgttgttgaggataagttggttcttttgaagggtgtaagtggagctttcagacctggtgttctcactgctctgatgggtgtgaccggtgctggcaaa 109  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||  | ||||||||||| |||    
T  39338553 aggtgttcttgaggataagttagttcttttgaagggtgtaagtggagctttcagaccaggtgttctcaccgctctgatgggcatcaccggtgctgggaaa 39338652  T
Q  110 acaactctgatggatgtgctttctggtaggaaaaccggaggatatattggtgggaacatcacaatttccggctttccaaagaagcaagaaacctttgcaa 209  Q
    ||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  39338653 acaactctgatggatgtgctttctggtagaaaaactggtggatatattggtgggaacatcaaaatttccggctttccaaagaagcaagaaacctttgcaa 39338752  T
Q  210 gaatttctgggtactgtgagcaaaatgatatccactctcc 249  Q
    |||||||||| ||||||||||||| ||||||||| |||||    
T  39338753 gaatttctggatactgtgagcaaactgatatccattctcc 39338792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 2 - 249
Target Start/End: Original strand, 39365898 - 39366145
Alignment:
Q  2 agaaacctaggtgttgttgaggataagttggttcttttgaagggtgtaagtggagctttcagacctggtgttctcactgctctgatgggtgtgaccggtg 101  Q
    ||||||| ||||||| ||||||||||||| |||||| |||||||| | ||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  39365898 agaaaccgaggtgttattgaggataagttagttcttctgaagggtcttagtggagctttcagaccaggtgttctcacggctctgatgggtgtgaccggtg 39365997  T
Q  102 ctggcaaaacaactctgatggatgtgctttctggtaggaaaaccggaggatatattggtgggaacatcacaatttccggctttccaaagaagcaagaaac 201  Q
    ||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||| || |||| ||||||||||||||||||    
T  39365998 ctggcaaaacaactctgatggatgtgctttctggtagaaaaactggtggatatattggtgggaacatcacaatatctggctatccaaagaagcaagaaac 39366097  T
Q  202 ctttgcaagaatttctgggtactgtgagcaaaatgatatccactctcc 249  Q
    |||||||||||||||||| ||||| ||||||| ||||||||| |||||    
T  39366098 ctttgcaagaatttctggatactgcgagcaaactgatatccattctcc 39366145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 4 - 259
Target Start/End: Original strand, 39353390 - 39353645
Alignment:
Q  4 aaacctaggtgttgttgaggataagttggttcttttgaagggtgtaagtggagctttcagacctggtgttctcactgctctgatgggtgtgaccggtgct 103  Q
    ||||| ||| ||| |||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||  | || ||||||    
T  39353390 aaaccgaggcgttcttgaagataagttagttcttttaaagggtgtaagtggagctttcagaccaggtgttctcacggctctgatgggcatcactggtgct 39353489  T
Q  104 ggcaaaacaactctgatggatgtgctttctggtaggaaaaccggaggatatattggtgggaacatcacaatttccggctttccaaagaagcaagaaacct 203  Q
    || ||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  39353490 ggaaaaacaactctaatggatgtgctttctggtagaaaaaccggtggatatattggtgggaacatcacaatttccggctatccaaaaaagcaagaaacct 39353589  T
Q  204 ttgcaagaatttctgggtactgtgagcaaaatgatatccactctccctatgctact 259  Q
    |||||||||||||||| ||||||||||||| ||||||||| ||||| |||| ||||    
T  39353590 ttgcaagaatttctggatactgtgagcaaactgatatccattctccttatgttact 39353645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 39538310 - 39538061
Alignment:
Q  10 aggtgttgttgaggataagttggttcttttgaagggtgtaagtggagctttcagacctggtgttctcactgctctgatgggtgtgaccggtgctggcaaa 109  Q
    ||||||||||||| ||| ||||||||||||||| ||| | ||||||||||||||||| ||||||||||||||||||||||| || || ||||| ||||||    
T  39538310 aggtgttgttgagaatatgttggttcttttgaaaggtctcagtggagctttcagaccaggtgttctcactgctctgatgggcgtcacgggtgcaggcaaa 39538211  T
Q  110 acaactctgatggatgtgctttctggtaggaaaaccggaggatatattggtgggaacatcacaatttccggctttccaaagaagcaagaaacctttgcaa 209  Q
    ||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||    
T  39538210 acaactctgatggatgtgctttctggtagaaaaactggtggatatattggtgggaacatcacaatttctggctatccaaagaagcaagatacctttgcaa 39538111  T
Q  210 gaatttctgggtactgtgagcaaaatgatatccactctccctatgctact 259  Q
    ||||||| || ||||||||||||| ||||||||| ||||| |||| ||||    
T  39538110 gaatttcaggatactgtgagcaaactgatatccattctccttatgttact 39538061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 39589587 - 39589357
Alignment:
Q  19 tgaggataagttggttcttttgaagggtgtaagtggagctttcagacctggtgttctcactgctctgatgggtgtgaccggtgctggcaaaacaactctg 118  Q
    |||||||||||||||||||||||| ||||| ||||||  ||| || |||||||||||||||||| | ||||| || || |||||||| ||||| ||| ||    
T  39589587 tgaggataagttggttcttttgaaaggtgtcagtggaatttttaggcctggtgttctcactgctttaatgggcgtcacgggtgctggaaaaactactttg 39589488  T
Q  119 atggatgtgctttctggtaggaaaaccggaggatatattggtgggaacatcacaatttccggctttccaaagaagcaagaaacctttgcaagaatttctg 218  Q
     ||||||||||||||||||| ||||| || |||||||||||||||| |||||||||||| || | ||| |||||||||||||| ||||||||||||||||    
T  39589487 ttggatgtgctttctggtagaaaaactggtggatatattggtgggaccatcacaatttctggatatcctaagaagcaagaaacatttgcaagaatttctg 39589388  T
Q  219 ggtactgtgagcaaaatgatatccactctcc 249  Q
    | |||||||||||||||||||||||||||||    
T  39589387 gatactgtgagcaaaatgatatccactctcc 39589357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 39575350 - 39575119
Alignment:
Q  18 ttgaggataagttggttcttttgaagggtgtaagtggagctttcagacctggtgttctcactgctctgatgggtgtgaccggtgctggcaaaacaactct 117  Q
    |||| |||||||||||||||||||| ||||| || |||||||| || || |||||||||||||| || |||||||| || |||||||||||||||||| |    
T  39575350 ttgaagataagttggttcttttgaacggtgtcagcggagcttttaggccaggtgttctcactgcacttatgggtgtcactggtgctggcaaaacaacttt 39575251  T
Q  118 gatggatgtgctttctggtaggaaaaccggaggatatattggtgggaacatcacaatttccggctttccaaagaagcaagaaacctttgcaagaatttct 217  Q
    ||||||||| ||| ||||||||||||  || ||||||||| |||||||||||||| |||||||   ||| || ||||||||||||||||||||||||||     
T  39575250 gatggatgtacttgctggtaggaaaagtgggggatatattagtgggaacatcacagtttccgggcatcccaaaaagcaagaaacctttgcaagaatttcc 39575151  T
Q  218 gggtactgtgagcaaaatgatatccactctcc 249  Q
    || |||||||||||||||||||| ||||||||    
T  39575150 ggatactgtgagcaaaatgatatacactctcc 39575119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 38 - 259
Target Start/End: Complemental strand, 39622336 - 39622115
Alignment:
Q  38 ttgaagggtgtaagtggagctttcagacctggtgttctcactgctctgatgggtgtgaccggtgctggcaaaacaactctgatggatgtgctttctggta 137  Q
    ||||| ||||| |||||  | |||||||| | ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||  |||| |    
T  39622336 ttgaatggtgtcagtggttcattcagaccggctgttctcacagctctgatgggtgtgactggtgctggcaaaacaactctgatggatgtactagctggaa 39622237  T
Q  138 ggaaaaccggaggatatattggtgggaacatcacaatttccggctttccaaagaagcaagaaacctttgcaagaatttctgggtactgtgagcaaaatga 237  Q
    | |||||| |||||||||||||||||| |||||||||||| |||| | |||||||||| ||||||||||||||| ||| ||| |||||||| |||||| |    
T  39622236 gaaaaaccagaggatatattggtgggaccatcacaatttctggctattcaaagaagcaggaaacctttgcaagagtttgtggatactgtgaacaaaatta 39622137  T
Q  238 tatccactctccctatgctact 259  Q
    |||||| ||||| |||| ||||    
T  39622136 tatccattctccttatgttact 39622115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 102 - 249
Target Start/End: Complemental strand, 1085013 - 1084865
Alignment:
Q  102 ctggcaaaacaactctgatggatgtgctttctggtaggaaaaccggaggatatattggtgggaacatcacaatttccggctttccaaagaa--gcaagaa 199  Q
    |||||||||||||| |||||||||||||| ||||||| ||||| |  |||||||||||||||||||||| |||||| |||| |||| ||||  |||||||    
T  1085013 ctggcaaaacaactttgatggatgtgctt-ctggtagaaaaactgatggatatattggtgggaacatcataatttctggctatccatagaaaagcaagaa 1084915  T
Q  200 acctttgcaagaatttctgggtactgtgagcaaaatgatatccactctcc 249  Q
    || ||| ||||||||||||| |||||||||||||  |||||||| |||||    
T  1084914 acatttacaagaatttctggatactgtgagcaaatagatatccattctcc 1084865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 161
Target Start/End: Complemental strand, 1085123 - 1085062
Alignment:
Q  99 gtgctggcaaaacaactctgatggatgtgctttctggtaggaaaaccggaggatatattggtg 161  Q
    ||||||||||||||||| |||||||||||| ||||||||| ||||| |  ||||| |||||||    
T  1085123 gtgctggcaaaacaactttgatggatgtgc-ttctggtagaaaaactgatggatacattggtg 1085062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 35 - 243
Target Start/End: Complemental strand, 44223420 - 44223212
Alignment:
Q  35 cttttgaagggtgtaagtggagctttcagacctggtgttctcactgctctgatgggtgtgaccggtgctggcaaaacaactctgatggatgtgctttctg 134  Q
    |||||||||||||| ||||| || ||||| || ||||||||||| ||| |||||||||| |  || ||||| |||||||||||||||||||| ||  |||    
T  44223420 cttttgaagggtgttagtggtgcattcaggcccggtgttctcacagctttgatgggtgtaagtggagctggtaaaacaactctgatggatgttctggctg 44223321  T
Q  135 gtaggaaaaccggaggatatattggtgggaacatcacaatttccggctttccaaagaagcaagaaacctttgcaagaatttctgggtactgtgagcaaaa 234  Q
    |||||||||| || |||||||||| |||  ||||||   |||| || |  || || ||||||||||| ||||| ||||||||||| ||||||||||| ||    
T  44223320 gtaggaaaacaggtggatatattgatggagacatcaaggtttctgggtaccctaaaaagcaagaaacatttgctagaatttctggctactgtgagcagaa 44223221  T
Q  235 tgatatcca 243  Q
    |||||||||    
T  44223220 tgatatcca 44223212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 35 - 243
Target Start/End: Complemental strand, 44234242 - 44234034
Alignment:
Q  35 cttttgaagggtgtaagtggagctttcagacctggtgttctcactgctctgatgggtgtgaccggtgctggcaaaacaactctgatggatgtgctttctg 134  Q
    |||||||||||||| ||||| || ||||| |||||||| || || ||| |||||||||| |  || ||||| |||||||||||||||||||| ||  |||    
T  44234242 cttttgaagggtgttagtggcgcattcaggcctggtgtacttacggctttgatgggtgtaagtggagctggtaaaacaactctgatggatgttctggctg 44234143  T
Q  135 gtaggaaaaccggaggatatattggtgggaacatcacaatttccggctttccaaagaagcaagaaacctttgcaagaatttctgggtactgtgagcaaaa 234  Q
    |||||||||| || |||||||||| |||  ||||||   |||| || | ||| || ||||||||||| ||||| ||||| || || ||||||||||| ||    
T  44234142 gtaggaaaacaggtggatatattgatggagacatcaaggtttctgggtatcctaaaaagcaagaaacatttgctagaatctccggttactgtgagcagaa 44234043  T
Q  235 tgatatcca 243  Q
    |||||||||    
T  44234042 tgatatcca 44234034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 35 - 240
Target Start/End: Complemental strand, 44211258 - 44211053
Alignment:
Q  35 cttttgaagggtgtaagtggagctttcagacctggtgttctcactgctctgatgggtgtgaccggtgctggcaaaacaactctgatggatgtgctttctg 134  Q
    |||||||||||||| || || || ||||| || ||||||||||| ||| |||||||||| |  || ||||| |||||||||||||||||||| ||  |||    
T  44211258 cttttgaagggtgttagcggtgcattcaggcccggtgttctcacagctttgatgggtgtaagtggagctggtaaaacaactctgatggatgttctggctg 44211159  T
Q  135 gtaggaaaaccggaggatatattggtgggaacatcacaatttccggctttccaaagaagcaagaaacctttgcaagaatttctgggtactgtgagcaaaa 234  Q
    |||||||||| || |||||||||| |||  ||||||   |||| || |  || || ||||||||||| ||||| ||||| ||||| |||||||| || ||    
T  44211158 gtaggaaaacaggtggatatattgatggagacatcaaggtttctgggtaccctaaaaagcaagaaacatttgctagaatatctggctactgtgaacagaa 44211059  T
Q  235 tgatat 240  Q
    ||||||    
T  44211058 tgatat 44211053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 243
Target Start/End: Complemental strand, 43457669 - 43457605
Alignment:
Q  179 ggctttccaaagaagcaagaaacctttgcaagaatttctgggtactgtgagcaaaatgatatcca 243  Q
    ||||| || ||||| |||||||| ||||||||||||||||| ||||| || ||||  ||||||||    
T  43457669 ggcttccctaagaatcaagaaacatttgcaagaatttctggatactgcgaacaaaccgatatcca 43457605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 246
Target Start/End: Original strand, 2877111 - 2877322
Alignment:
Q  35 cttttgaagggtgtaagtggagctttcagacctggtgttctcactgctctgatgggtgtgaccggtgctggcaaaacaactctgatggatgtgctttctg 134  Q
    ||||||||||| || ||||| || || ||||||||||||||||| ||| |||||||||| |  || ||||| ||||| ||| ||||||||||  |  |||    
T  2877111 cttttgaagggagttagtggtgcatttagacctggtgttctcacagctttgatgggtgttagtggagctggtaaaactactttgatggatgtattggctg 2877210  T
Q  135 gtaggaaaaccggaggatatattggtgggaacatcacaatttccggctttccaaagaagcaagaaacctttgcaagaatttctgggtactgtgagcaaaa 234  Q
    ||||||||||  | || ||||||| ||||| ||| | |||||| || |  || || ||||||||||| ||||| ||||| ||||| || |||||||| ||    
T  2877211 gtaggaaaactagtggttatattgatgggagcataaaaatttctggttaccctaaaaagcaagaaacatttgctagaatctctggctattgtgagcagaa 2877310  T
Q  235 tgatatccactc 246  Q
    ||||||||||||    
T  2877311 tgatatccactc 2877322  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 249
Target Start/End: Original strand, 2886878 - 2887092
Alignment:
Q  35 cttttgaagggtgtaagtggagctttcagacctggtgttctcactgctctgatgggtgtgaccggtgctggcaaaacaactctgatggatgtgctttctg 134  Q
    |||||||||||||| ||||| || || || |||||||||||||| ||  | ||||| || |  || ||||| ||||| ||| | ||||||||  |  |||    
T  2886878 cttttgaagggtgttagtggtgcatttaggcctggtgttctcacagccttaatgggagttagtggagctggtaaaactactttaatggatgttttggctg 2886977  T
Q  135 gtaggaaaaccggaggatatattggtgggaacatcacaatttccggctttccaaagaagcaagaaacctttgcaagaatttctgggtactgtgagcaaaa 234  Q
    |||||||||| || || |||||||  |||| ||| | |||||| || |  || || || |||||||| |||||  |||| ||||| || |||||||| ||    
T  2886978 gtaggaaaactggtggttatattgacgggagcataaaaatttctgggtaccctaaaaaacaagaaacgtttgctcgaatctctggttattgtgagcagaa 2887077  T
Q  235 tgatatccactctcc 249  Q
    ||||||||| |||||    
T  2887078 tgatatccattctcc 2887092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 259
Target Start/End: Original strand, 49773066 - 49773290
Alignment:
Q  35 cttttgaagggtgtaagtggagctttcagacctggtgttctcactgctctgatgggtgtgaccggtgctggcaaaacaactctgatggatgtgctttctg 134  Q
    |||||||  ||||| | ||||||||| ||||| || ||||| || ||||| |||||| | |  || ||||| ||||||||||| ||||||||||| ||||    
T  49773066 cttttgacaggtgttaatggagcttttagaccaggagttctgacagctctaatgggtataagtggagctggtaaaacaactctaatggatgtgctgtctg 49773165  T
Q  135 gtaggaaaaccggaggatatattggtgggaacatcacaatttccggctttccaaagaagcaagaaacctttgcaagaatttctgggtactgtgagcaaaa 234  Q
    | ||||||||   ||||||| ||   ||  | ||||| || ||||| |  || |||||||||||||| ||| |  | || || || |||||||||||||     
T  49773166 gaaggaaaacaacaggatatgttcaaggacaaatcactatatccgggtaccctaagaagcaagaaacattttctcggatatcaggatactgtgagcaaac 49773265  T
Q  235 tgatatccactctccctatgctact 259  Q
    |||||||||||||||| ||| ||||    
T  49773266 tgatatccactctccccatgttact 49773290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 207
Target Start/End: Complemental strand, 2161113 - 2160941
Alignment:
Q  35 cttttgaagggtgtaagtggagctttcagacctggtgttctcactgctctgatgggtgtgaccggtgctggcaaaacaactctgatggatgtgctttctg 134  Q
    |||||||||||| | | ||| || || || ||||| || || |||||| |||||||||| |  ||||| || || || ||||| ||||||||  |  |||    
T  2161113 cttttgaagggtatcaatggcgcctttaggcctggagtactaactgctttgatgggtgtaagtggtgccggaaagactactctaatggatgttttagctg 2161014  T
Q  135 gtaggaaaaccggaggatatattggtgggaacatcacaatttccggctttccaaagaagcaagaaacctttgc 207  Q
    | |||||||| || |||||||||| ||| ||||||||||| ||||||| ||||||||| ||| |||| |||||    
T  2161013 gaaggaaaactggtggatatattgatggaaacatcacaatatccggctatccaaagaatcaaaaaacatttgc 2160941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 4501297 - 4501349
Alignment:
Q  188 aagaagcaagaaacctttgcaagaatttctgggtactgtgagcaaaatgatat 240  Q
    ||||| |||||||||||||||||| ||||||| || ||||| |||| ||||||    
T  4501297 aagaaccaagaaacctttgcaagagtttctggttattgtgaacaaactgatat 4501349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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