View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10113_low_34 (Length: 253)
Name: NF10113_low_34
Description: NF10113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10113_low_34 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 745610 - 745844
Alignment:
| Q |
19 |
tatactacattatgaatacttgattatattgtgttcgtagaaaatgggtcgtggaagaatatctatggaactcattcaaaaggagagatctagaaagata |
118 |
Q |
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| T |
745610 |
tatactacattatgaatacttgattatattgtgttcgtagaaaatgggtcgtggaagaatatctatggaactcattcaaaaggagagatctagaaagata |
745709 |
T |
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| Q |
119 |
acattgcaaaagagaaaggatggtttaataaagaaagcaaatgaattttccattctttgtgatgttgatgtttgtttgatcttgtacgctcctaaccttg |
218 |
Q |
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| T |
745710 |
acattgcaaaagagaaaggatggtttaataaagaaagcaaaggaattttccattctttgtgatgttgatgtttgtttgatcttgtacgctcctaaccttg |
745809 |
T |
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| Q |
219 |
aagaccaaggatacattgaacctgaaacatggcct |
253 |
Q |
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| T |
745810 |
aaggccaaggatatattgaacctgaaacatggcct |
745844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 57 - 253
Target Start/End: Complemental strand, 7327882 - 7327686
Alignment:
| Q |
57 |
agaaaatgggtcgtggaagaatatctatggaactcattcaaaaggagagatctagaaagataacattgcaaaagagaaaggatggtttaataaagaaagc |
156 |
Q |
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| T |
7327882 |
agaaaatgggtcgtggaagaatatctatggaactcattcaaaaggagaaatcaagaaagacaacatttcagaagagaaagaatggattaatgaaaaaagt |
7327783 |
T |
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| Q |
157 |
aaatgaattttccattctttgtgatgttgatgtttgtttgatcttgtacgctcctaaccttgaagaccaaggatacattgaacctgaaacatggcct |
253 |
Q |
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| T |
7327782 |
gaatgaattttccattctttgtgatgttgatgtttgtgtaattctctatgctcctaactttgaagcccaaggattcgttgaacctgaaacatggcct |
7327686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 29 - 253
Target Start/End: Original strand, 751523 - 751747
Alignment:
| Q |
29 |
tatgaatacttgattatattgtgttcgtagaaaatgggtcgtggaagaatatctatggaactcattcaaaaggagagatctagaaagataacattgcaaa |
128 |
Q |
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| T |
751523 |
tatgaacacatgcttatattgtgttcgcagcaaatgggtcgtggaagagtatctgtggaatttattcaaaaggagaaatctagaaagatatcattgcaaa |
751622 |
T |
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| Q |
129 |
agagaaaggatggtttaataaagaaagcaaatgaattttccattctttgtgatgttgatgtttgtttgatcttgtacgctcctaaccttgaagaccaagg |
228 |
Q |
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| T |
751623 |
caagaaagattggtttaatgacaaaagttgaggaactttccattctttgtgatgttgatgcttgtgtgattctttatgctcccaactttgaaggccaagg |
751722 |
T |
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| Q |
229 |
atacattgaacctgaaacatggcct |
253 |
Q |
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| T |
751723 |
gtatgatgaacctgaaacatggcct |
751747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 52 - 193
Target Start/End: Complemental strand, 51792977 - 51792836
Alignment:
| Q |
52 |
ttcgtagaaaatgggtcgtggaagaatatctatggaactcattcaaaaggagagatctagaaagataacattgcaaaagagaaaggatggtttaataaag |
151 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| | ||| |||||| ||||||||||||||||| ||||| || |
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| T |
51792977 |
ttcgtaggaaatgggtcgtggaagaatatctatggaactcattcaaaaggagaaatcacggaagtcaacatttcaaaagagaaaggatggattaatgaaa |
51792878 |
T |
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| Q |
152 |
aaagcaaatgaattttccattctttgtgatgttgatgtttgt |
193 |
Q |
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| T |
51792877 |
aaagtgaatgaattttccattctttgtgatgttgatgtttgt |
51792836 |
T |
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