View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10113_low_37 (Length: 250)
Name: NF10113_low_37
Description: NF10113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10113_low_37 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 5 - 250
Target Start/End: Complemental strand, 5481273 - 5481028
Alignment:
| Q |
5 |
gagaagcataggtggttgggcaattgctgtgcatggtggtgctggtgttgaccctaatctccctcttcaacgtcaagaagaagccaaacaacttcttact |
104 |
Q |
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| T |
5481273 |
gagaaacatgggtggttgggcaattgctgtgcatggtggtgctggtgttgaccctaatctccctcttcaacgtcaagaagaagccaaacaacttcttact |
5481174 |
T |
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| Q |
105 |
cgtgttctcaatcttggcatctctgctcttcgttccaatctttctgccatcgatgttgttgaacttgtggtatgtgttgtgtctatctcacatgtaccat |
204 |
Q |
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| T |
5481173 |
cgtgttctcaatcttggcatctctgctcttcgttccaatctttctgccatcgatgttgttgaacttgtggtatgtgttgtgtctatctcacatgtaccat |
5481074 |
T |
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| Q |
205 |
aataatattgttcacacttcctcgtacccacatacacatgtttccc |
250 |
Q |
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| T |
5481073 |
aataatattgttcacacttcctcgtacccacatacacatgtttccc |
5481028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 42165733 - 42165571
Alignment:
| Q |
17 |
tggttgggcaattgctgtgcatggtggtgctggtgttgaccctaatctccctcttcaacgtcaagaagaagccaaacaacttcttactcgtgttctcaat |
116 |
Q |
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| T |
42165733 |
tggttgggctattgctgtgcatggtggcgccggtgtggatcctaatctcccaccacaacgtcaggaagaagccaaacaacttcttactcattgtcttaat |
42165634 |
T |
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| Q |
117 |
cttggcatctctgctcttcgttccaatctttctgccatcgatgttgttgaacttgtggtatgt |
179 |
Q |
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| T |
42165633 |
attggcatatttgctctccgttccaatggttctgctgtcgatgtcgttgaacttgttgtatgt |
42165571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 47170183 - 47170309
Alignment:
| Q |
17 |
tggttgggcaattgctgtgcatggtggtgctggtgttgaccctaatctccctcttcaacgtcaagaagaagccaaacaacttcttactcgtgt-tctcaa |
115 |
Q |
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| T |
47170183 |
tggttgggctattgctgttcatggcggtgcaggtgtggatcctaacctcccaccacaccgtcagcaagaagccaaacagcttcttac-cgaatgtctcaa |
47170281 |
T |
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| Q |
116 |
tcttggcatctctgctcttcgttccaat |
143 |
Q |
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| T |
47170282 |
tctcggtatctctgctctccgatccaat |
47170309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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